View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16794_high_10 (Length: 283)
Name: NF16794_high_10
Description: NF16794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16794_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 256
Target Start/End: Complemental strand, 27643299 - 27643059
Alignment:
| Q |
16 |
gtgagatttgggacttgattgtggaggaatatgggcttcataagaccaaattggaggaaattgcttcctttgaagcaacactgccatttctgcggtttga |
115 |
Q |
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| T |
27643299 |
gtgagatttgggacctgattgtggaggaatatgggcttcataagaccaaattggaggaaattgcttcctttgaagcaacggtgccagttctgcggtttca |
27643200 |
T |
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| Q |
116 |
gtttcaacatgtatctagtatgaacaagagtaagaactatgggttctttgagtatgcagatacgtttaagagtatcagattctgggtggctaagctgagg |
215 |
Q |
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| T |
27643199 |
gtttcaacatgtatctagtatgaacaaaagtaaggattatgggttctttgagtatgcagatacgtttaagagtatcagattctgggtggctaagttgagg |
27643100 |
T |
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| Q |
216 |
gagatgaaactcatatccttctaccaacgttgaattgcatt |
256 |
Q |
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| T |
27643099 |
gagatgaaactcatacccgtctacaaacattgaattgcatt |
27643059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 50247592 - 50247819
Alignment:
| Q |
16 |
gtgagatttgggacttgattgtggaggaatatgggcttcataagaccaaattggaggaaattgcttcctttgaagcaacactgccatttctgcggtttga |
115 |
Q |
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| T |
50247592 |
gtgaggtttgggacttgattgtagagaaatatgggcttcataagaccaagttgaaggaaattgcttgctttgaagccatggtgccagttgtacggtttga |
50247691 |
T |
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| Q |
116 |
gtttcaacatgtatctagtatgaacaagagtaagaactatgggttctttgagtatgcagatacgtttaagagtatcagattctgggtggctaagctgagg |
215 |
Q |
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| T |
50247692 |
gtttcaacatgtatctagtatgaacaagagtaaagattatgggtttttagagtatgctgatacgtttaagagtatcaaactctgggtggctaagctgagg |
50247791 |
T |
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| Q |
216 |
gagatgaaactcatatccttctaccaac |
243 |
Q |
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| T |
50247792 |
gagatgaaacttataccctcctaccaac |
50247819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 32 - 249
Target Start/End: Original strand, 50254745 - 50254962
Alignment:
| Q |
32 |
gattgtggaggaatatgggcttcataagaccaaattggaggaaattgcttcctttgaagcaacactgccatttctgcggtttgagtttcaacatgtatct |
131 |
Q |
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| T |
50254745 |
gattgtggaggagtatggacttcataagaccaaattggaggaaattgcttgttttgatgccttggtgccagtttttcgatttgagtttcaacttgtatct |
50254844 |
T |
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| Q |
132 |
agtatgaacaagagtaagaactatgggttctttgagtatgcagatacgtttaagagtatcagattctgggtggctaagctgagggagatgaaactcatat |
231 |
Q |
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| T |
50254845 |
agtatgaataagagtaaaaattatgagttttttgagtatgctgagacgtttaatagtgtgaaattctgggtgatgaagctgagggagatgaatctcatac |
50254944 |
T |
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| Q |
232 |
ccttctaccaacgttgaa |
249 |
Q |
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| T |
50254945 |
ccatctacgaacattgaa |
50254962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 193 - 278
Target Start/End: Complemental strand, 27646328 - 27646243
Alignment:
| Q |
193 |
gattctgggtggctaagctgagggagatgaaactcatatccttctaccaacgttgaattgcattatctgtaataatattcttcgac |
278 |
Q |
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| T |
27646328 |
gattctgggtggctaagctgagggagatgaaactcatacccttctaccaacattgaattgcattatctgtaataatattgttcgac |
27646243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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