View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16794_high_8 (Length: 309)
Name: NF16794_high_8
Description: NF16794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16794_high_8 |
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| [»] scaffold0026 (2 HSPs) |
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Alignment Details
Target: scaffold0026 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 298
Target Start/End: Complemental strand, 101399 - 101119
Alignment:
| Q |
18 |
cgtctattataaaagttggatatattagagatggacttatattctgaatgccttaaaagaaattgaagatgatgctcatgaaccattggtacgtagttgc |
117 |
Q |
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| T |
101399 |
cgtctattataaaagttggatatattagagatggacttatattctgaatgccttaaaagaaattgaagatgatactcatgaatcattggtacgttgttgc |
101300 |
T |
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| Q |
118 |
tcccacacacgctctccctgatcaattaagttgcaggaaaatgaattaggaaattcaattatatttaaaatttaaaattacttatcaaattggcactgtc |
217 |
Q |
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| T |
101299 |
tcccacacacgctctcccttatcaattaagttgcaggaaaatgaattaggaaattcaattatatttaaaatttaaaattacttatcaaattggcactgtc |
101200 |
T |
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| Q |
218 |
cagttgatcatgagcttctttcatttcagctttgatggcattggccagctgatcatgagcttctgcccatgcatttttcat |
298 |
Q |
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| T |
101199 |
cagttgatcatgagcttctttcatttcagctttgatggcattggccagccgatcatgagcttctgcccatgcatttttcat |
101119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 103330 - 103266
Alignment:
| Q |
230 |
agcttctttcatttcagctttgatggcattggccagctgatcatgagcttctgcccatgcatttt |
294 |
Q |
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| T |
103330 |
agcttttttcatttcagctttgatggcattggcgagttgatcatgagcttctccccatgcatttt |
103266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 161 - 298
Target Start/End: Original strand, 25849161 - 25849298
Alignment:
| Q |
161 |
aattaggaaattcaattatatttaaaatttaaaattacttatcaaattggcactgtccagttgatcatgagcttctttcatttcagctttgatggcattg |
260 |
Q |
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| T |
25849161 |
aattagaacattcaattatatttaaaatttaaaattacttatcaaattggcattgtccatctgatcatgagcttctttcatttcaactttgatggcattg |
25849260 |
T |
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| Q |
261 |
gccagctgatcatgagcttctgcccatgcatttttcat |
298 |
Q |
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| T |
25849261 |
gcaagctgatcatgagcttctgcccatgcatttttcat |
25849298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 236 - 294
Target Start/End: Original strand, 25847178 - 25847236
Alignment:
| Q |
236 |
tttcatttcagctttgatggcattggccagctgatcatgagcttctgcccatgcatttt |
294 |
Q |
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| T |
25847178 |
tttcatttcagctttgatggcattggccagttgatcatgggcttctccccatgcatttt |
25847236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 298
Target Start/End: Original strand, 25844918 - 25844980
Alignment:
| Q |
236 |
tttcatttcagctttgatggcattggccagctgatcatgagcttctgcccatgcatttttcat |
298 |
Q |
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| T |
25844918 |
tttcatttcagatttgattgcattgaccaactgatcataagcttctccccatgcattcttcat |
25844980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 25848980 - 25849033
Alignment:
| Q |
21 |
ctattataaaagttggatatattagagatggacttatattctgaatgccttaaa |
74 |
Q |
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| T |
25848980 |
ctataataaaagttggatacaccagagatggacttatattcttaatgccttaaa |
25849033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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