View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16794_low_1 (Length: 542)
Name: NF16794_low_1
Description: NF16794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16794_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 525; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 1 - 537
Target Start/End: Original strand, 36445080 - 36445616
Alignment:
| Q |
1 |
gcttcatggtccaacttccctcctccatctctctccgattgccgcaacaatctcaaccaatgcctcgaatccatggcggagaaagcactccgattaggat |
100 |
Q |
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| T |
36445080 |
gcttcatggtccaacttccctcctccatctctctccgattgccgcaacaatctcaaccaatgcctcgaatccatggcggagaaagcactccaattaggat |
36445179 |
T |
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| Q |
101 |
cccttacttctcgtcagatcttcaattcgcttaataaatggcacggtttaaccaccgcgctacgtcgcgtgttgaatgatactgtttctaaaggctctac |
200 |
Q |
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| T |
36445180 |
cccttacttctcgtcagatcttcaattcgcttaataaatggcacggtttaaccaccgcgctacgtcgcgtgttgaatgatactgtttctaaaggctctac |
36445279 |
T |
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| Q |
201 |
ggctgtgctgtgggaccgggcggtgttggctatgacgaaggaatgtagtggtgatgagattgatagggttttgggatttgggaaaaaggtgaagagtgtt |
300 |
Q |
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| T |
36445280 |
ggctgtgctgtgggaccgggcggtgttggctatgacgaaggaatgtagtggtgatgagattgatagggttttgggatttgggaaaaaggtgaagagtgtt |
36445379 |
T |
|
| Q |
301 |
atgtctgttgaagagagtttgtattttaaggaatctgtagttgcgttgaagcttgcgaaaagagttattgagattcagcaagggtttaaggggaatgcta |
400 |
Q |
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| T |
36445380 |
atgtctgttgaagagagtttgtattttaaggaatctgtagttgcgttgaagcttgcgaaaagagttattgaaattcagcaagggtttaaggggaatgcta |
36445479 |
T |
|
| Q |
401 |
ttgcgaatatgaatcggactggaactttttcgaggactcttacgcattcttccactgattggccttttttgttgttggatttgttgtctcaggctgctga |
500 |
Q |
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| T |
36445480 |
ttgcgaatatgaatcggactggaactttttcgaggactcttacgcattcttccactgattggccttttttgttgttggatatgttgtctcaggctgctga |
36445579 |
T |
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| Q |
501 |
aattgatcattttcaggtacttttacagtgaattgcc |
537 |
Q |
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| T |
36445580 |
aattgatcattttcaggtacttttacagtgaattgcc |
36445616 |
T |
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