View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16794_low_13 (Length: 242)
Name: NF16794_low_13
Description: NF16794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16794_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 5 - 141
Target Start/End: Complemental strand, 14784779 - 14784643
Alignment:
| Q |
5 |
taagtttgccatcaaaacttaagcattgttgcttccaaaccacttactctgcttttaattttgtcaacgatgttatgaaactttcccttggtagctctac |
104 |
Q |
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| T |
14784779 |
taagtttgccatcaaaactcaagcattgttgcttccaaaccacttactctgcttttaattttgtcaacgatgttatgaaactttcccttggtagctctac |
14784680 |
T |
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| Q |
105 |
ctgaacttatgtttgcctccaaatacctcgccatatt |
141 |
Q |
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| T |
14784679 |
ctggacttatgtttgcctccaaatacctcgccatatt |
14784643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 24 - 130
Target Start/End: Original strand, 48899277 - 48899382
Alignment:
| Q |
24 |
taagcattgttgcttccaaaccacttactctgcttttaattttgtcaacgatgttatgaaactttcccttggtagctctacctgaacttatgtttgcctc |
123 |
Q |
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| T |
48899277 |
taagcattgttgcttccaa-ccacttagtctattttgaattttgtcaatgacgttatgaaactttcccctagtagctctacctgcactaatgttagcccc |
48899375 |
T |
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| Q |
124 |
caaatac |
130 |
Q |
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| T |
48899376 |
caaatac |
48899382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 31116890 - 31116960
Alignment:
| Q |
17 |
caaaacttaagcattgttgcttccaaaccacttactctgcttttaattttgtcaacgatgttatgaaacttt |
88 |
Q |
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||||||||||||||| |||||||||| ||||||| |||| ||| |||||| |||| |||||||||||||||| |
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| T |
31116890 |
caaaacttaagcattattgcttccaa-ccacttagtctgttttgaattttttcaatgatgttatgaaacttt |
31116960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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