View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16794_low_14 (Length: 242)
Name: NF16794_low_14
Description: NF16794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16794_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 5721542 - 5721316
Alignment:
| Q |
1 |
accaccaccgtttcatcacgctacgtcgtcgtttttgccttcagcacttcttccgaatcagtttggacagattttcccattgagaacgcgtacgagcttc |
100 |
Q |
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| T |
5721542 |
accaccaccgtttcatcacgctacgtcgtcgtttttgccttcagcacttcttccgaatcagtttggacagattttcccattgagaacgcgtacgagcttc |
5721443 |
T |
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| Q |
101 |
tagaagtttcgcaaacaagctcattcgatgagatcaaagcttcgtttcgcaaattggcgaaagaaactcaccctgatgttgccgagtcaaggaacgattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5721442 |
tagaagtttcgcaaacaagctcattcgatgagatcaaagcttcgtttcgcaaattggcgaaagaaactcaccctgatgttgccgagtcaaggaacgattc |
5721343 |
T |
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| Q |
201 |
cactgcttctaaacgttttgttcaaat |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
5721342 |
cactgcttctaaacgttttgttcaaat |
5721316 |
T |
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