View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16794_low_16 (Length: 238)

Name: NF16794_low_16
Description: NF16794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16794_low_16
NF16794_low_16
[»] chr3 (13 HSPs)
chr3 (17-238)||(51191868-51192092)
chr3 (17-238)||(8457816-8458040)
chr3 (17-238)||(51951855-51952079)
chr3 (17-238)||(55218642-55218866)
chr3 (17-238)||(43018351-43018575)
chr3 (17-214)||(39133579-39133777)
chr3 (17-238)||(13444037-13444262)
chr3 (17-234)||(21689658-21689876)
chr3 (50-238)||(39383404-39383595)
chr3 (87-238)||(26400168-26400319)
chr3 (116-226)||(7622657-7622766)
chr3 (153-222)||(19396815-19396884)
chr3 (205-238)||(39135493-39135526)
[»] chr8 (12 HSPs)
chr8 (17-238)||(5839684-5839908)
chr8 (20-238)||(25663427-25663648)
chr8 (87-236)||(32282841-32282990)
chr8 (20-238)||(32577959-32578194)
chr8 (87-236)||(11503067-11503216)
chr8 (87-238)||(36531128-36531279)
chr8 (87-226)||(10342354-10342497)
chr8 (38-238)||(14219792-14219995)
chr8 (98-236)||(40395242-40395378)
chr8 (175-222)||(31037712-31037759)
chr8 (159-230)||(10631232-10631303)
chr8 (181-230)||(43234217-43234266)
[»] chr4 (19 HSPs)
chr4 (17-238)||(2536975-2537199)
chr4 (20-238)||(26429188-26429409)
chr4 (17-238)||(48446565-48446789)
chr4 (17-238)||(26006081-26006305)
chr4 (17-238)||(35853078-35853302)
chr4 (17-238)||(52759123-52759347)
chr4 (17-236)||(33846227-33846449)
chr4 (21-238)||(17423818-17424038)
chr4 (17-238)||(12274099-12274323)
chr4 (17-235)||(19396165-19396386)
chr4 (17-238)||(8169321-8169544)
chr4 (22-235)||(9034822-9035025)
chr4 (29-238)||(25058300-25058512)
chr4 (17-236)||(22359239-22359460)
chr4 (33-230)||(54552540-54552740)
chr4 (21-238)||(791868-792066)
chr4 (105-215)||(23860011-23860121)
chr4 (154-230)||(6839751-6839827)
chr4 (154-230)||(28031563-28031639)
[»] scaffold0200 (1 HSPs)
scaffold0200 (26-238)||(26934-27149)
[»] chr5 (13 HSPs)
chr5 (20-238)||(9609498-9609719)
chr5 (20-238)||(30796794-30797015)
chr5 (17-238)||(29242104-29242328)
chr5 (21-232)||(1721894-1722108)
chr5 (93-238)||(39860924-39861069)
chr5 (154-238)||(36978766-36978850)
chr5 (182-238)||(16007128-16007184)
chr5 (19-118)||(27452586-27452687)
chr5 (157-238)||(4052904-4052985)
chr5 (156-210)||(27452519-27452573)
chr5 (199-238)||(40109287-40109326)
chr5 (87-140)||(4052855-4052908)
chr5 (202-238)||(27452479-27452515)
[»] chr6 (12 HSPs)
chr6 (17-238)||(32957357-32957581)
chr6 (24-238)||(7435612-7435829)
chr6 (17-238)||(7597479-7597703)
chr6 (88-238)||(7608471-7608621)
chr6 (91-233)||(6192539-6192681)
chr6 (21-238)||(12523534-12523733)
chr6 (129-232)||(34183123-34183226)
chr6 (27-236)||(31797974-31798186)
chr6 (48-238)||(13406068-13406261)
chr6 (156-230)||(29025240-29025314)
chr6 (17-71)||(6192490-6192544)
chr6 (17-63)||(7607807-7607853)
[»] chr2 (17 HSPs)
chr2 (17-238)||(23769771-23769995)
chr2 (17-238)||(38451689-38451912)
chr2 (17-238)||(24477472-24477696)
chr2 (16-238)||(45085981-45086206)
chr2 (17-238)||(22605837-22606061)
chr2 (17-225)||(10213737-10213948)
chr2 (17-238)||(23407745-23407969)
chr2 (116-237)||(31411362-31411483)
chr2 (129-238)||(11616665-11616774)
chr2 (26-238)||(1604784-1604998)
chr2 (17-199)||(40074065-40074247)
chr2 (174-238)||(20214282-20214346)
chr2 (111-238)||(32025536-32025662)
chr2 (31-235)||(27177657-27177864)
chr2 (154-226)||(28317811-28317883)
chr2 (173-206)||(2599233-2599266)
chr2 (202-238)||(1605079-1605115)
[»] scaffold0450 (1 HSPs)
scaffold0450 (17-235)||(5210-5431)
[»] scaffold0016 (1 HSPs)
scaffold0016 (20-238)||(187048-187269)
[»] chr7 (21 HSPs)
chr7 (20-238)||(14160386-14160607)
chr7 (20-230)||(25611367-25611580)
chr7 (17-238)||(9360661-9360885)
chr7 (17-238)||(23362208-23362432)
chr7 (20-236)||(3962292-3962511)
chr7 (21-238)||(4595026-4595246)
chr7 (17-238)||(30466587-30466813)
chr7 (17-238)||(40187277-40187502)
chr7 (17-238)||(42851884-42852111)
chr7 (66-238)||(8150851-8151026)
chr7 (40-203)||(28423910-28424076)
chr7 (45-236)||(9026511-9026702)
chr7 (87-238)||(5866209-5866360)
chr7 (148-238)||(6596199-6596289)
chr7 (17-185)||(24267771-24267942)
chr7 (62-238)||(21946920-21947086)
chr7 (72-238)||(2405146-2405314)
chr7 (16-236)||(35827485-35827708)
chr7 (193-238)||(12152783-12152828)
chr7 (154-227)||(25506029-25506102)
chr7 (206-238)||(19290392-19290424)
[»] scaffold0577 (1 HSPs)
scaffold0577 (17-238)||(2195-2419)
[»] scaffold0279 (1 HSPs)
scaffold0279 (17-238)||(6632-6856)
[»] scaffold0011 (1 HSPs)
scaffold0011 (26-238)||(58328-58543)
[»] chr1 (11 HSPs)
chr1 (93-238)||(48522162-48522307)
chr1 (42-210)||(25698534-25698705)
chr1 (157-238)||(25070822-25070903)
chr1 (29-238)||(19956467-19956676)
chr1 (21-140)||(25070899-25071021)
chr1 (154-233)||(15393504-15393583)
chr1 (142-238)||(26347389-26347485)
chr1 (29-222)||(11079872-11080068)
chr1 (17-82)||(48518980-48519045)
chr1 (154-222)||(20621464-20621532)
chr1 (87-127)||(15327485-15327525)
[»] scaffold0004 (1 HSPs)
scaffold0004 (17-209)||(216381-216576)
[»] scaffold0360 (1 HSPs)
scaffold0360 (146-230)||(5316-5400)
[»] scaffold0201 (2 HSPs)
scaffold0201 (168-238)||(20703-20773)
scaffold0201 (88-124)||(20650-20686)


Alignment Details
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 51192092 - 51191868
Alignment:
Q  17 aaaagtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaag 113  Q
    ||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||| ||||||| ||||   ||||||||||||||||| ||||||||    
T  51192092 aaaagtggcgtctctaattttagtgtagtaatcaatgactgtagacgtctgttagcttatgatttagtaacctctgatgttaggtttattcagagacaag 51191993  T
Q  114 ccaacgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaa 213  Q
    |||||||||||||| |||||||||||| | ||||||||| |||||||||||| |||||||||||||  |||||||||||||||| |||||||||||||||    
T  51191992 ccaacgaagtcgttcatagctttgctagattgactttgcgtcatgctagtttccatattcatattatgatttcatcttgtatctgtactattattatgaa 51191893  T
Q  214 tgaaatgcaataagtttcttcttgt 238  Q
    |||||||||||||||||||||||||    
T  51191892 tgaaatgcaataagtttcttcttgt 51191868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 8457816 - 8458040
Alignment:
Q  17 aaaagtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaag 113  Q
    ||||||| |||||||||||| || ||||| |||||||||||| |||  |||||||||| ||||||| ||||   |||||||||||||||||| |||||||    
T  8457816 aaaagtgacgtctctaatttcagcgcagttatcaatgattgtagacacctgttagcttttgatttagtaacctctgatgttaggtttattcgaagacaag 8457915  T
Q  114 ccaacgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaa 213  Q
    |||| ||||||| |||||||||||||| | || |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  8457916 ccaatgaagtcgcttatagctttgctataatggctttgcgtcatgctagttttcatattcatattaggatttcatcttgtatctctactattattatgaa 8458015  T
Q  214 tgaaatgcaataagtttcttcttgt 238  Q
    |||||||||||||||||||||||||    
T  8458016 tgaaatgcaataagtttcttcttgt 8458040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 51951855 - 51952079
Alignment:
Q  17 aaaagtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaag 113  Q
    |||||||| |||||||||||| | |||||||||||||| ||| |||| |||||||||||||||||| ||||   |||||||||||||||||| |||||||    
T  51951855 aaaagtggggtctctaatttttgcgcagtaatcaatgactgtagacgcctgttagcttctgatttagtaacctctgatgttaggtttattcgaagacaag 51951954  T
Q  114 ccaacgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaa 213  Q
    |||| ||| ||| | |||| ||||||| |||| |||| | ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  51951955 ccaatgaattcgctcatagttttgctagagtggctttacgtcatgctagttttcatattcatattaggattccatcttgtatctctactattattatgaa 51952054  T
Q  214 tgaaatgcaataagtttcttcttgt 238  Q
    |||||||||||||||||||| ||||    
T  51952055 tgaaatgcaataagtttctttttgt 51952079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 55218866 - 55218642
Alignment:
Q  17 aaaagtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaag 113  Q
    ||||||||||| ||||||||||| ||| | || ||||||||| ||||||||||||||||||||||| ||||   |||||||||||| |||||||||||||    
T  55218866 aaaagtggcgtatctaattttagcgcatttattaatgattgtagacgtctgttagcttctgatttagtaacctctgatgttaggttcattcggagacaag 55218767  T
Q  114 ccaacgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaa 213  Q
    |||||||||||| | |||||||||||| |||| |||||| |||||||||||| |||||||||||||| ||| ||||||||| |||||||||||| || ||    
T  55218766 ccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagtttccatattcatattaggattccatcttgtacctctactattatcataaa 55218667  T
Q  214 tgaaatgcaataagtttcttcttgt 238  Q
    |||||||||||||||||||| ||||    
T  55218666 tgaaatgcaataagtttctttttgt 55218642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 43018575 - 43018351
Alignment:
Q  17 aaaagtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaag 113  Q
    ||||||| ||||||||||||||| ||||||||||| || | | ||||  ||||||||||||||||| ||||   ||||||||||||||||||||||||||    
T  43018575 aaaagtgacgtctctaattttagcgcagtaatcaaagactatagacgcatgttagcttctgatttagtaacctctgatgttaggtttattcggagacaag 43018476  T
Q  114 ccaacgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaa 213  Q
    ||||| |||| | | |||| ||||||| ||||  ||||| |||||||||||| |||||||||||||  ||| ||||||||||||||||||||||||||||    
T  43018475 ccaacaaagttgctcatagttttgctatagtggttttgcgtcatgctagtttccatattcatattatgattccatcttgtatctctactattattatgaa 43018376  T
Q  214 tgaaatgcaataagtttcttcttgt 238  Q
    ||||||||||||| |||||||||||    
T  43018375 tgaaatgcaataaatttcttcttgt 43018351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 39133579 - 39133777
Alignment:
Q  17 aaaagtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaag 113  Q
    ||||||| ||||||||||||||| |  ||||| ||||||||| ||||| ||||||||||||||||| ||||   |||||||||||| |||||||||||||    
T  39133579 aaaagtgacgtctctaattttagcg--gtaattaatgattgtagacgtttgttagcttctgatttagtaacctctgatgttaggttcattcggagacaag 39133676  T
Q  114 ccaacgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaa 213  Q
    |||||||||||| | |||||||||||| ||||||||||| |||||||||||| |||||||||||||| |||  |||||||||||||||||||||| ||||    
T  39133677 ccaacgaagtcgctcatagctttgctagagtgactttgcgtcatgctagtttccatattcatattaggattcaatcttgtatctctactattattttgaa 39133776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 13444037 - 13444262
Alignment:
Q  17 aaaagtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgattt---aataactgatgttaggtttattcggagacaag 113  Q
    ||||||||||||||||||||||| |||||||| ||||| ||| ||||||||||||||||||||||   ||  ||||||||||||||||||||||||||||    
T  13444037 aaaagtggcgtctctaattttagcgcagtaattaatgactgtagacgtctgttagcttctgatttagcaaccactgatgttaggtttattcggagacaag 13444136  T
Q  114 ccaacgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatct-ctactattattatga 212  Q
     ||||||||||| | |||||||| ||    || |||  | |||| ||||||| |||||||||||||| ||| |||||| ||||| ||||||| |||||||    
T  13444137 tcaacgaagtcgctcatagctttcctcggttggcttcacgtcattctagtttccatattcatattaggattccatcttttatctcctactatcattatga 13444236  T
Q  213 atgaaatgcaataagtttcttcttgt 238  Q
    ||||||| ||||||||||||||||||    
T  13444237 atgaaatacaataagtttcttcttgt 13444262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 21689658 - 21689876
Alignment:
Q  17 aaaagtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaag 113  Q
    ||||||| ||||||||||||||| |||||||||||||| ||| ||||  ||||||||||| || || ||||   ||||||||||||||||| ||||||||    
T  21689658 aaaagtgacgtctctaattttagcgcagtaatcaatgaatgtagacgcttgttagcttctaatctagtaacctctgatgttaggtttattcagagacaag 21689757  T
Q  114 ccaacgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaa 213  Q
     ||||||||||  | |  ||||||||| |||| |||||| ||||| |||||| |||||||||||||  ||||||||||||||||||||||||||||||||    
T  21689758 tcaacgaagtcactca--gctttgctagagtggctttgcgtcatgttagtttccatattcatattatgatttcatcttgtatctctactattattatgaa 21689855  T
Q  214 tgaaatgcaataagtttcttc 234  Q
    |||||| ||||||||| ||||    
T  21689856 tgaaatacaataagttacttc 21689876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 50 - 238
Target Start/End: Original strand, 39383404 - 39383595
Alignment:
Q  50 aatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaagccaacgaagtcgtttatagctttgctaaagtga 146  Q
    ||||||||| || | || ||||||||| ||||||||||   |||||||||||||||||||||||||| ||||||||||||| |||||||||||  ||||     
T  39383404 aatgattgtagatgcctattagcttctaatttaataacctctgatgttaggtttattcggagacaagtcaacgaagtcgttcatagctttgctcgagtgg 39383503  T
Q  147 ctttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaatgaaatgcaataagtttcttcttgt 238  Q
     ||||| ||||| || ||| |||||||||||||  ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39383504 ttttgcgtcatgttaatttccatattcatattatgattccattttgtatctctactattattatgaatgaaatgcaataagtttcttcttgt 39383595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 87 - 238
Target Start/End: Original strand, 26400168 - 26400319
Alignment:
Q  87 ctgatgttaggtttattcggagacaagccaacgaagtcgtttatagctttgcta---aagtgactttgcatcatgctagttttcatattcatattagaat 183  Q
    ||||||||||||||||||  |||||||||||| |||||| | |||| |||||||   ||||   || || |||||||||||| |||||||||||||  ||    
T  26400168 ctgatgttaggtttattcatagacaagccaacaaagtcgctcatagttttgctaggaaagt---ttcgcgtcatgctagtttccatattcatattatgat 26400264  T
Q  184 ttcatcttgtatctctactattattatgaatgaaatgcaataagtttcttcttgt 238  Q
    | ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26400265 tccatattgtatctctactattattatgaatgaaatgcaataagtttcttcttgt 26400319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 116 - 226
Target Start/End: Original strand, 7622657 - 7622766
Alignment:
Q  116 aacgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaatg 215  Q
    |||||| ||| |||||| |||||||| ||| ||| || | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  7622657 aacgaaatcgcttatagatttgctaaggtggcttcgcgt-atgctagttttcatattcatattaggatttcatcttgtatctctactattattataaatg 7622755  T
Q  216 aaatgcaataa 226  Q
    |||||||||||    
T  7622756 aaatgcaataa 7622766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 222
Target Start/End: Original strand, 19396815 - 19396884
Alignment:
Q  153 atcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaatgaaatgca 222  Q
    ||||||||||||| | || |  |||| ||||| ||||||||||||| || ||||||||||||| ||||||    
T  19396815 atcatgctagtttccgtacttttattcgaattccatcttgtatctcaacaattattatgaatgtaatgca 19396884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 238
Target Start/End: Original strand, 39135493 - 39135526
Alignment:
Q  205 tattatgaatgaaatgcaataagtttcttcttgt 238  Q
    |||| |||||||||||||||||||||||||||||    
T  39135493 tattttgaatgaaatgcaataagtttcttcttgt 39135526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 151; Significance: 5e-80; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 5839684 - 5839908
Alignment:
Q  17 aaaagtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaag 113  Q
    ||||||||||||||||||||||| ||||| || ||||||||| ||||||||||||||||||||||| ||||   |||||||||||| ||| |||||||||    
T  5839684 aaaagtggcgtctctaattttagcgcagttattaatgattgtagacgtctgttagcttctgatttagtaacctctgatgttaggttcatttggagacaag 5839783  T
Q  114 ccaacgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaa 213  Q
    |||||||||||| | |||||||||||| |||| |||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||    
T  5839784 ccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagtttccatattaatattagaatttcatcttgtatctctactattatcatgaa 5839883  T
Q  214 tgaaatgcaataagtttcttcttgt 238  Q
    |||||||||||||||||||||||||    
T  5839884 tgaaatgcaataagtttcttcttgt 5839908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 20 - 238
Target Start/End: Original strand, 25663427 - 25663648
Alignment:
Q  20 agtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaagcca 116  Q
    |||||||||||||||||||| ||||| || ||||||||| ||||||||||||||||||||||| ||||   |||||||||||| ||||||||||||||||    
T  25663427 agtggcgtctctaattttagcgcagttattaatgattgtagacgtctgttagcttctgatttagtaacctctgatgttaggttcattcggagacaagcca 25663526  T
Q  117 acgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaatga 216  Q
    ||||||||| | |||||||||||| ||||  ||||| |||||||| ||| |||||||||||||| ||| |||||||||||||| |||||||| |||||||    
T  25663527 acgaagtcgctcatagctttgctagagtggatttgcgtcatgctattttccatattcatattaggattccatcttgtatctctcctattattttgaatga 25663626  T
Q  217 aatgcaataagtttcttcttgt 238  Q
    ||||||||||||||||||||||    
T  25663627 aatgcaataagtttcttcttgt 25663648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 87 - 236
Target Start/End: Complemental strand, 32282990 - 32282841
Alignment:
Q  87 ctgatgttaggtttattcggagacaagccaacgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttc 186  Q
    |||||||||||||||||||||||||| |||||||||||| | |||||||||||| |||||||||||||||||||||||| |||||||||||||| ||| |    
T  32282990 ctgatgttaggtttattcggagacaaaccaacgaagtcgctcatagctttgctagagtgactttgcatcatgctagtttccatattcatattaggattcc 32282891  T
Q  187 atcttgtatctctactattattatgaatgaaatgcaataagtttcttctt 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32282890 atcttgtatctctactattattatgaatgaaatgcaataagtttcttctt 32282841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 20 - 238
Target Start/End: Original strand, 32577959 - 32578194
Alignment:
Q  20 agtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataa---ctgatgttaggtttattcggagacaagcca 116  Q
    |||||||||||||||||||||||||| || ||||| ||| ||||||||||||||||||||||| |||   ||||||||||||| ||||||||||||||||    
T  32577959 agtggcgtctctaattttagtgcagttattaatgaatgtagacgtctgttagcttctgatttagtaacctctgatgttaggttcattcggagacaagcca 32578058  T
Q  117 acgaagtcgtttatagctttgctaaag--------------tgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctact 202  Q
    ||||||| | | |||||||||||| ||              || |||||| |||||||||||| |||||||||||||| ||| |||||||||||||||||    
T  32578059 acgaagttgctcatagctttgctagagtggctttgctagaatggctttgcgtcatgctagtttccatattcatattaggattccatcttgtatctctact 32578158  T
Q  203 attattatgaatgaaatgcaataagtttcttcttgt 238  Q
    |||||| ||||||||||||||||||||| |||||||    
T  32578159 attattttgaatgaaatgcaataagtttattcttgt 32578194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 87 - 236
Target Start/End: Complemental strand, 11503216 - 11503067
Alignment:
Q  87 ctgatgttaggtttattcggagacaagccaacgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttc 186  Q
    ||||||||||||| ||||||||||||||||||||||||| | ||||||| |||| |||| |||||| |||||||||||| |||||||||||||| ||| |    
T  11503216 ctgatgttaggttcattcggagacaagccaacgaagtcgctcatagcttcgctagagtggctttgcgtcatgctagtttccatattcatattaggattcc 11503117  T
Q  187 atcttgtatctctactattattatgaatgaaatgcaataagtttcttctt 236  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  11503116 atcttgtatctctactattattttgaatgaaatgcaataagtttcttctt 11503067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 87 - 238
Target Start/End: Original strand, 36531128 - 36531279
Alignment:
Q  87 ctgatgttaggtttattcggagacaagccaacgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttc 186  Q
    |||||||||||||||||||||||||||| |||||||||| |||||| ||||||| | |   ||||  |||||||| ||| |||||||||||||| ||| |    
T  36531128 ctgatgttaggtttattcggagacaagcaaacgaagtcgcttatagttttgctagaatagttttgtgtcatgctaatttccatattcatattaggattcc 36531227  T
Q  187 atcttgtatctctactattattatgaatgaaatgcaataagtttcttcttgt 238  Q
    ||||||| |||||||||||||||||||||||||||||||| | |||||||||    
T  36531228 atcttgtttctctactattattatgaatgaaatgcaataaatctcttcttgt 36531279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 87 - 226
Target Start/End: Original strand, 10342354 - 10342497
Alignment:
Q  87 ctgatgttaggtttattcggagacaagccaacgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattca---tattagaat 183  Q
    ||||||||||||||||| |||||||| |||||||| ||| | |||||||||||||| || |||||  |||||||||||||||||||||   |||||| ||    
T  10342354 ctgatgttaggtttatttggagacaaaccaacgaaatcgctcatagctttgctaaaatggctttgtgtcatgctagttttcatattcatattattaggat 10342453  T
Q  184 ttcatcttgtatctctactattatt-atgaatgaaatgcaataa 226  Q
    | |||||| |||||||||||||||| ||||||||||| ||||||    
T  10342454 tccatcttatatctctactattattaatgaatgaaatacaataa 10342497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 38 - 238
Target Start/End: Complemental strand, 14219995 - 14219792
Alignment:
Q  38 agtgcagtaatcaatgattgtggacgtctgttagcttctgatt---taataactgatgttaggtttattcggagacaagccaacgaagtcgtttatagct 134  Q
    |||||||| |||||||||||| ||||||||||||||| |||||   ||||| ||||||||||||||||| |||||||| ||||| |||||| | |||  |    
T  14219995 agtgcagtgatcaatgattgtagacgtctgttagcttttgatttagtaatatctgatgttaggtttattaggagacaaaccaacaaagtcggtcataatt 14219896  T
Q  135 ttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaatgaaatgcaataagtttcttc 234  Q
    | || | |||||||  |  ||||| |||||| |||||||||||||  |||||| |||  || |||||||||||| | |||||||| |||||| |||||||    
T  14219895 tcgccagagtgactccgtgtcatgttagtttccatattcatattaagatttcagcttacatttctactattattttaaatgaaatacaataaatttcttc 14219796  T
Q  235 ttgt 238  Q
    ||||    
T  14219795 ttgt 14219792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 98 - 236
Target Start/End: Original strand, 40395242 - 40395378
Alignment:
Q  98 tttattcggagacaagccaacgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatct 197  Q
    |||||||||||||||| |||| |||||  | |||||||||||| ||||  || || ||||| |||||| ||||||||||||||||||| |||||||||||    
T  40395242 tttattcggagacaagtcaactaagtcactcatagctttgctagagtggattcgcgtcatgttagtttccatattcatattagaattttatcttgtatct 40395341  T
Q  198 ctactattattatgaatgaaatgcaataagtttcttctt 236  Q
    ||||||||||  |||||||||| |||||| |||||||||    
T  40395342 ctactattat--tgaatgaaatacaataaatttcttctt 40395378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 31037759 - 31037712
Alignment:
Q  175 tattagaatttcatcttgtatctctactattattatgaatgaaatgca 222  Q
    ||||| |||| ||||||||||||||||||||||| |||||||||||||    
T  31037759 tattaaaattccatcttgtatctctactattattttgaatgaaatgca 31037712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 230
Target Start/End: Complemental strand, 10631303 - 10631232
Alignment:
Q  159 ctagttttcatattcatattagaatttcatcttgtatctctactattattatgaatgaaatgcaataagttt 230  Q
    |||||||||||||  ||| ||  |||||||| ||| |||||||| ||||||||||| ||||||| |||||||    
T  10631303 ctagttttcatatctatactaatatttcatcatgtgtctctactcttattatgaataaaatgcactaagttt 10631232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 43234217 - 43234266
Alignment:
Q  181 aatttcatcttgtatctctactattattatgaatgaaatgcaataagttt 230  Q
    |||||||||||||||||||||| ||||| | ||| ||||||| |||||||    
T  43234217 aatttcatcttgtatctctactcttattttaaatcaaatgcattaagttt 43234266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 151; Significance: 5e-80; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 2537199 - 2536975
Alignment:
Q  17 aaaagtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaag 113  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||  ||||||||||||||||| ||||   ||||||||||||||||||||||||||    
T  2537199 aaaagtggcgtctctaattttagtgcagtaatcaatgactgtagacgcatgttagcttctgatttagtaacctctgatgttaggtttattcggagacaag 2537100  T
Q  114 ccaacgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaa 213  Q
    |||||||||||  ||||| |||||||| ||||||||||| |||||||||||| ||||||||| |||| ||| ||||||||||||||||||||||||||||    
T  2537099 ccaacgaagtctcttataactttgctagagtgactttgcgtcatgctagtttccatattcatgttaggattccatcttgtatctctactattattatgaa 2537000  T
Q  214 tgaaatgcaataagtttcttcttgt 238  Q
    | |||||||||||||||||||||||    
T  2536999 taaaatgcaataagtttcttcttgt 2536975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 20 - 238
Target Start/End: Complemental strand, 26429409 - 26429188
Alignment:
Q  20 agtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaagcca 116  Q
    |||||||||| ||||||||| ||||| || ||||||||| ||||||||||||||||||||||| ||||   |||||||||||| ||||||||||||||||    
T  26429409 agtggcgtctttaattttagcgcagttattaatgattgtagacgtctgttagcttctgatttagtaacctctgatgttaggttcattcggagacaagcca 26429310  T
Q  117 acgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaatga 216  Q
    || |||||| | |||||||||||| |||| |||||| |||||||||||| |||||||||||||| ||| ||||||||||||||||||||||| |||||||    
T  26429309 acaaagtcgctcatagctttgctagagtggctttgcgtcatgctagtttccatattcatattaggattccatcttgtatctctactattattttgaatga 26429210  T
Q  217 aatgcaataagtttcttcttgt 238  Q
    ||||||||||||||||||||||    
T  26429209 aatgcaataagtttcttcttgt 26429188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 48446565 - 48446789
Alignment:
Q  17 aaaagtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaag 113  Q
    ||||||||||||||||||||||| ||||||||||||||  || |||||||||||||||| |||||| ||||   ||||||||||||||||||||||||||    
T  48446565 aaaagtggcgtctctaattttagcgcagtaatcaatgacggtagacgtctgttagcttcagatttagtaacctctgatgttaggtttattcggagacaag 48446664  T
Q  114 ccaacgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaa 213  Q
    |||||||||| | | |||||||||||| ||||||||||| |||||||||||| |||||||||||||   || |||||| |||||||||||||||||||||    
T  48446665 ccaacgaagttgctcatagctttgctagagtgactttgcgtcatgctagtttccatattcatattatggttccatcttatatctctactattattatgaa 48446764  T
Q  214 tgaaatgcaataagtttcttcttgt 238  Q
    |||||| |||||| |||||||||||    
T  48446765 tgaaatacaataaatttcttcttgt 48446789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 26006305 - 26006081
Alignment:
Q  17 aaaagtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataact---gatgttaggtttattcggagacaag 113  Q
    ||||||||||||||||||||||   ||||||||||||| ||| |||  ||||||||||||||| || |||||   |||||||||||||||| ||||||||    
T  26006305 aaaagtggcgtctctaattttatcacagtaatcaatgactgtagacccctgttagcttctgatgtagtaacttctgatgttaggtttattcagagacaag 26006206  T
Q  114 ccaacgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaa 213  Q
    |||||||||||| | |||| ||||||  |||| |||||| |||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||    
T  26006205 ccaacgaagtcgctcatagttttgcttgagtggctttgcgtcatgctagtttccatattcatattaggattccatcttgtatctctactattattatgaa 26006106  T
Q  214 tgaaatgcaataagtttcttcttgt 238  Q
    |||||||||||||||||||||||||    
T  26006105 tgaaatgcaataagtttcttcttgt 26006081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 35853078 - 35853302
Alignment:
Q  17 aaaagtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaag 113  Q
    ||||||||| ||||||||||||| ||||| || | ||||||| ||| ||||||||||||||||||||||||   |||||||||||| |||||||||||||    
T  35853078 aaaagtggcatctctaattttagcgcagttattagtgattgtagacttctgttagcttctgatttaataacctctgatgttaggttcattcggagacaag 35853177  T
Q  114 ccaacgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaa 213  Q
     ||||||||||| | |||| ||||||| |||| |||||| |||||||||||| |||||||||||||| ||| ||||||||||||||||||||||| ||||    
T  35853178 tcaacgaagtcgctcatagttttgctagagtggctttgcgtcatgctagtttccatattcatattaggattccatcttgtatctctactattattttgaa 35853277  T
Q  214 tgaaatgcaataagtttcttcttgt 238  Q
    | |||||||||||||||||||||||    
T  35853278 ttaaatgcaataagtttcttcttgt 35853302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 52759347 - 52759123
Alignment:
Q  17 aaaagtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaag 113  Q
    |||| |||||||||||||||||| |||||||||||||||||| ||||  ||||||||| ||||||| ||||   ||||||||||||||||||||||||||    
T  52759347 aaaactggcgtctctaattttagcgcagtaatcaatgattgtagacgcatgttagcttatgatttagtaacctctgatgttaggtttattcggagacaag 52759248  T
Q  114 ccaacgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaa 213  Q
    |||||||||||| | |||| |||| || |||| |||||  |||||||||||| |||||||||||||  ||| |||| ||||||| |||||||||||||||    
T  52759247 ccaacgaagtcgctcatagttttgttagagtggctttgtgtcatgctagtttccatattcatattatgattccatcgtgtatctatactattattatgaa 52759148  T
Q  214 tgaaatgcaataagtttcttcttgt 238  Q
    |||||||||||||||||||||||||    
T  52759147 tgaaatgcaataagtttcttcttgt 52759123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 17 - 236
Target Start/End: Original strand, 33846227 - 33846449
Alignment:
Q  17 aaaagtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaag 113  Q
    ||||||||| | ||||||||||| |||||||||||||| | | ||||| ||||||||||||||||  ||||   || |||||||||||||||||||||||    
T  33846227 aaaagtggcatatctaattttagcgcagtaatcaatgactatagacgtttgttagcttctgatttggtaacctctggtgttaggtttattcggagacaag 33846326  T
Q  114 ccaacgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaa 213  Q
    |||||||||||| | |||||||||||| |||| |||||| |||||||||||| |||||||| ||||| ||| |||||||||| |||||||||||| ||||    
T  33846327 ccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagtttccatattcacattaggattccatcttgtatttctactattattctgaa 33846426  T
Q  214 tgaaatgcaataagtttcttctt 236  Q
    |||||||||||||||||||||||    
T  33846427 tgaaatgcaataagtttcttctt 33846449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 17424038 - 17423818
Alignment:
Q  21 gtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaagccaa 117  Q
    ||||||||||||||||||| ||||| |||||||| ||| ||||  ||||||||||||||||   |||   ||||||||||||||||||||||||||||||    
T  17424038 gtggcgtctctaattttagcgcagtgatcaatgactgtagacgcatgttagcttctgatttggcaacctatgatgttaggtttattcggagacaagccaa 17423939  T
Q  118 cgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaatgaa 217  Q
    |||||| | | |||||||||||| |||| ||| |  |||||||||||| |||||||||||||| ||| |||||||||||||||||||||| |||||||||    
T  17423938 cgaagttgctcatagctttgctagagtggcttcgagtcatgctagtttccatattcatattaggattccatcttgtatctctactattatcatgaatgaa 17423839  T
Q  218 atgcaataagtttcttcttgt 238  Q
    || ||||||||||||||||||    
T  17423838 attcaataagtttcttcttgt 17423818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 12274099 - 12274323
Alignment:
Q  17 aaaagtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaag 113  Q
    |||||||||  ||||||||| || |||||||||||||| ||| || |  ||||||||||||||||| ||||   |||||||||||||||||||||| |||    
T  12274099 aaaagtggcacctctaatttcagcgcagtaatcaatgactgtagatgcttgttagcttctgatttagtaacctctgatgttaggtttattcggagataag 12274198  T
Q  114 ccaacgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaa 213  Q
    |||||||||||| |  ||||||||||| ||| ||||||  ||||| ||||||  ||||| ||||||| ||| ||||||||||||||||||||||||||||    
T  12274199 ccaacgaagtcgctcttagctttgctagagtaactttgtgtcatgttagtttctatatttatattaggattccatcttgtatctctactattattatgaa 12274298  T
Q  214 tgaaatgcaataagtttcttcttgt 238  Q
    ||||||||||||||||| |||||||    
T  12274299 tgaaatgcaataagttttttcttgt 12274323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 19396386 - 19396165
Alignment:
Q  17 aaaagtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaag 113  Q
    ||||||| ||||||||||| ||||||| |||| ||| |||||  | || ||||||||||||||||| ||||   ||||||||||||||||||||||||||    
T  19396386 aaaagtgtcgtctctaattatagtgcaataataaataattgtaaatgtttgttagcttctgatttagtaacctttgatgttaggtttattcggagacaag 19396287  T
Q  114 ccaacgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaa 213  Q
    ||||  |||||| |||||| |||||||  ||| |||||| |||| |||||||||| ||||||||||  |||  |||||||||||||||||||||||||||    
T  19396286 ccaataaagtcgcttatagttttgctatggtggctttgcgtcatactagttttcacattcatattaagattgtatcttgtatctctactattattatgaa 19396187  T
Q  214 tgaaatgcaataagtttcttct 235  Q
    ||||||||||||||||| ||||    
T  19396186 tgaaatgcaataagttttttct 19396165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 8169544 - 8169321
Alignment:
Q  17 aaaagtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaag 113  Q
    |||||||| |||| | ||||||| ||| |||| ||||||||| || |  ||||||||||||||||| ||||   ||||||||||||||||||||||||||    
T  8169544 aaaagtggtgtcttttattttagcgcattaattaatgattgtagatgcatgttagcttctgatttagtaacctctgatgttaggtttattcggagacaag 8169445  T
Q  114 ccaacgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaa 213  Q
    |||||||||||| | ||||||||||||   || ||| || ||||||||||||   |||||||||||||||| || ||| |||||||||||||||||||||    
T  8169444 ccaacgaagtcgctcatagctttgctaggatggcttcgcgtcatgctagtttcattattcatattagaattccaccttatatctctactattattatgaa 8169345  T
Q  214 tgaaatgcaataagtttcttcttgt 238  Q
    || ||||||||||||||||||||||    
T  8169344 tg-aatgcaataagtttcttcttgt 8169321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 22 - 235
Target Start/End: Original strand, 9034822 - 9035025
Alignment:
Q  22 tggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaagccaac 118  Q
    |||||| ||||||||||| ||||| || ||||||||| || |||||||||||||||||||| ||||   |||||||||||||||||||||||||||||||    
T  9034822 tggcgtttctaattttagcgcagttattaatgattgtagatgtctgttagcttctgatttagtaacctctgatgttaggtttattcggagacaagccaac 9034921  T
Q  119 gaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaatgaaa 218  Q
    ||||||| | |             ||| |||||| |||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  9034922 gaagtcggtca-------------gtggctttgcgtcatgctagtttccatattcatattaggattccatcttgtatctctactattattatgaatgaaa 9035008  T
Q  219 tgcaataagtttcttct 235  Q
    |||||||||||||||||    
T  9035009 tgcaataagtttcttct 9035025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 29 - 238
Target Start/End: Complemental strand, 25058512 - 25058300
Alignment:
Q  29 tctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaagccaacgaagtcg 125  Q
    ||||||||||| |||||||| ||||||||| ||||||||||||||||||||||| ||||   |||||||||||||||| |||||||||||||||||||||    
T  25058512 tctaattttagcgcagtaattaatgattgtagacgtctgttagcttctgatttagtaacatctgatgttaggtttatttggagacaagccaacgaagtcg 25058413  T
Q  126 tttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaatgaaatgcaata 225  Q
     | |||| |||| || | || ||| || ||||| |||||| |||||||||||||  |||  |||||||||||||||||||||||||||| ||||  | ||    
T  25058412 ctcatagttttgttagactggcttcgcgtcatgttagtttccatattcatattaagattcaatcttgtatctctactattattatgaataaaatatagta 25058313  T
Q  226 agtttcttcttgt 238  Q
    |||||||||||||    
T  25058312 agtttcttcttgt 25058300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 17 - 236
Target Start/End: Complemental strand, 22359460 - 22359239
Alignment:
Q  17 aaaagtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataa---ctgatgttaggtttattcggagacaag 113  Q
    ||||||| |||||||||||||||  ||||||||||| ||||| || | |||||||||||||||||| |||   |||||||| | |||||||| | |||||    
T  22359460 aaaagtgacgtctctaattttagcacagtaatcaattattgtcgatgcctgttagcttctgatttagtaatctctgatgtttg-tttattcgaatacaag 22359362  T
Q  114 ccaacgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaa 213  Q
    |||||||||||  | |||| ||||||  |||| |||||  |||||||||||| |||||||||||||  ||| ||||||||||||||||||||||||||||    
T  22359361 ccaacgaagtcactcatagttttgctttagtggctttgtgtcatgctagtttccatattcatattaagattccatcttgtatctctactattattatgaa 22359262  T
Q  214 tgaaatgcaataagtttcttctt 236  Q
    ||||||||||||||||| |||||    
T  22359261 tgaaatgcaataagtttgttctt 22359239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 33 - 230
Target Start/End: Original strand, 54552540 - 54552740
Alignment:
Q  33 attttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaagccaacgaagtcgttta 129  Q
    ||||||| | |||||| |||||||||  ||| || ||| ||||||||||| ||||   |||||||||||||||||||| |||||| |||||||||| | |    
T  54552540 attttagcgtagtaataaatgattgtatacgcctattaacttctgatttagtaacctctgatgttaggtttattcggatacaagctaacgaagtcggtca 54552639  T
Q  130 tagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaatgaaatgcaataagtt 229  Q
    ||||||||||| |||| |||||| ||||||||| |||||||||||||| || ||| | |||||||||| | |||||||||||||||||||||||||||||    
T  54552640 tagctttgctagagtggctttgcgtcatgctagatttcatattcatatcaggattccttcttgtatctttgctattattatgaatgaaatgcaataagtt 54552739  T
Q  230 t 230  Q
    |    
T  54552740 t 54552740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 238
Target Start/End: Original strand, 791868 - 792066
Alignment:
Q  21 gtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataa---ctgatgttaggtttattcggagacaagccaa 117  Q
    |||| |||||||||||||| ||||| |||||||||||| ||||||||||||||||| |||||  ||   |||||||||||||||||||||||||| ||||    
T  791868 gtggtgtctctaattttagcgcagtgatcaatgattgtagacgtctgttagcttctaatttagcaacctctgatgttaggtttattcggagacaaaccaa 791967  T
Q  118 cgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaatgaa 217  Q
    |||||| | | |||| ||||                     ||||||| |||||||||||||| ||| |||||| ||||||||| |||||||||||||||    
T  791968 cgaagttgctcatagttttg---------------------ctagtttccatattcatattaggattccatcttatatctctac-attattatgaatgaa 792045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 105 - 215
Target Start/End: Complemental strand, 23860121 - 23860011
Alignment:
Q  105 ggagacaagccaacgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactat 204  Q
    ||||| ||| ||||||| ||| | |||||||| ||| ||||| ||||||||||  || |||||||||||||||||  ||||||||| ||||||||||||     
T  23860121 ggagataagtcaacgaaatcgctcatagctttactagagtgattttgcatcataataattttcatattcatattacgatttcatctcgtatctctactac 23860022  T
Q  205 tattatgaatg 215  Q
    ||| |||||||    
T  23860021 tataatgaatg 23860011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 230
Target Start/End: Complemental strand, 6839827 - 6839751
Alignment:
Q  154 tcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaatgaaatgcaataagttt 230  Q
    |||||||||||| || |||  |||||||||| |||||| ||||||||| |||||||||||| ||||||| |||||||    
T  6839827 tcatgctagtttccacatttttattagaattccatcttttatctctacgattattatgaataaaatgcactaagttt 6839751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 230
Target Start/End: Original strand, 28031563 - 28031639
Alignment:
Q  154 tcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaatgaaatgcaataagttt 230  Q
    |||||||||||||| ||||   |||  |||||||||||||||||||||| ||||| | ||| ||||| | |||||||    
T  28031563 tcatgctagttttcgtattttcattcaaatttcatcttgtatctctacttttattttaaataaaatgtattaagttt 28031639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 26 - 238
Target Start/End: Complemental strand, 27149 - 26934
Alignment:
Q  26 gtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaagccaacgaag 122  Q
    ||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||  ||||   |||| ||||||||||||||||||||||||||||||    
T  27149 gtctctaattttagtgcagtaatcaatgattgtagacgcctgttatcttctgatttcgtaacctctgattttaggtttattcggagacaagccaacgaag 27050  T
Q  123 tcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaatgaaatgca 222  Q
    ||| | |||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  27049 tcgctcatagctttgctagagtggctttgcgtcatgctagttttcatattcatattagaatttcatcttgtatctctgctattattatgaatgaaatgca 26950  T
Q  223 ataagtttcttcttgt 238  Q
    |||||||| |||||||    
T  26949 ataagttttttcttgt 26934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 144; Significance: 7e-76; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 20 - 238
Target Start/End: Complemental strand, 9609719 - 9609498
Alignment:
Q  20 agtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaagcca 116  Q
    |||||||||||||||||||| ||||| || ||||||||| ||||||||||||||||||||||| ||||   |||||||||||| ||||||||||||||||    
T  9609719 agtggcgtctctaattttagcgcagttattaatgattgtagacgtctgttagcttctgatttagtaacctctgatgttaggttcattcggagacaagcca 9609620  T
Q  117 acgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaatga 216  Q
    ||||||||| | ||||||| |||| |||| ||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||| || ||||    
T  9609619 acgaagtcgctcatagcttcgctagagtggctttgcatcatgctagtttccatattcatattaggattccatcttgtatctctactattattttgtatga 9609520  T
Q  217 aatgcaataagtttcttcttgt 238  Q
    ||||||||||||||||||||||    
T  9609519 aatgcaataagtttcttcttgt 9609498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 20 - 238
Target Start/End: Complemental strand, 30797015 - 30796794
Alignment:
Q  20 agtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaagcca 116  Q
    |||||||||||||||||||| ||||| || ||||||||| ||||||| ||||||| ||||||| ||||   |||||||||||| ||||||||||||||||    
T  30797015 agtggcgtctctaattttagcgcagttattaatgattgtagacgtctattagcttatgatttagtaacctctgatgttaggttcattcggagacaagcca 30796916  T
Q  117 acgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaatga 216  Q
    ||||||||| | |||||||||||| |||| |||||| || ||||||||| |||||||||||||| ||| ||||||| ||||||||||||||| |||||||    
T  30796915 acgaagtcgctcatagctttgctagagtggctttgcgtcttgctagtttccatattcatattaggattccatcttgcatctctactattattttgaatga 30796816  T
Q  217 aatgcaataagtttcttcttgt 238  Q
    ||||||||||||||||||||||    
T  30796815 aatgcaataagtttcttcttgt 30796794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 29242328 - 29242104
Alignment:
Q  17 aaaagtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaag 113  Q
    ||||||||||||||||||||||| ||||  || ||||||||| ||||||||||||||||||| ||| ||||   |||||||||||| |||||||||||||    
T  29242328 aaaagtggcgtctctaattttagcgcagatattaatgattgtagacgtctgttagcttctgacttagtaacctctgatgttaggttcattcggagacaag 29242229  T
Q  114 ccaacgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaa 213  Q
    |||| ||||||| | |||||||||||| |||| |||| |||||||||||||| |||||| ||||||| ||| ||| ||||||||||||||||||| ||||    
T  29242228 ccaatgaagtcgctcatagctttgctagagtggctttacatcatgctagtttccatatttatattaggattccatattgtatctctactattattttgaa 29242129  T
Q  214 tgaaatgcaataagtttcttcttgt 238  Q
    |||||||||||||||||||||||||    
T  29242128 tgaaatgcaataagtttcttcttgt 29242104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 21 - 232
Target Start/End: Original strand, 1721894 - 1722108
Alignment:
Q  21 gtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaagccaa 117  Q
    ||||||||| ||||||||| ||||| ||||||||||||  ||| |||||| ||| ||||||| ||||   |||||||||||||||| |||||||||||||    
T  1721894 gtggcgtctttaattttagcgcagtgatcaatgattgtaaacgcctgttaacttatgatttagtaacctctgatgttaggtttatttggagacaagccaa 1721993  T
Q  118 cgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaatgaa 217  Q
    |||||||| | |||| || |||| |||| ||| || |||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||| |||    
T  1721994 cgaagtcgctcatagtttggctagagtggcttcgcgtcatgctagtttccatattcatattaaaatttcatcttgtatctctattattattatgaaagaa 1722093  T
Q  218 atgcaataagtttct 232  Q
    |||||||||||||||    
T  1722094 atgcaataagtttct 1722108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 93 - 238
Target Start/End: Original strand, 39860924 - 39861069
Alignment:
Q  93 ttaggtttattcggagacaagccaacgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttg 192  Q
    ||||||||||||||||||||||||| ||||||| | |||  |||||||  ||| ||| || |||||||||||| |||||||||||||  |||  ||||||    
T  39860924 ttaggtttattcggagacaagccaaggaagtcgctcataattttgctagggtggcttcgcgtcatgctagtttccatattcatattatgattcaatcttg 39861023  T
Q  193 tatctctactattattatgaatgaaatgcaataagtttcttcttgt 238  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||    
T  39861024 tatctctactattattatgaaagaaatgcaataagttttttcttgt 39861069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 154 - 238
Target Start/End: Original strand, 36978766 - 36978850
Alignment:
Q  154 tcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaatgaaatgcaataagtttcttcttgt 238  Q
    ||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36978766 tcatgctagttttcatatttatattaggattccatcttgtatctctactattattatgaatgaaatgcaataagtttcttcttgt 36978850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 16007184 - 16007128
Alignment:
Q  182 atttcatcttgtatctctactattattatgaatgaaatgcaataagtttcttcttgt 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16007184 atttcatcttgtatctctactattattatgaatgaaatgcaataagtttcttcttgt 16007128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 27452687 - 27452586
Alignment:
Q  19 aagtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataa---ctgatgttaggtttattcggagacaagcc 115  Q
    ||||||||||||||||||||| ||| |||||||||||||| |||  |||||||||| ||||||| |||   ||||||||||||||||||||||| |||||    
T  27452687 aagtggcgtctctaattttagcgcaataatcaatgattgtagac-actgttagcttatgatttagtaacctctgatgttaggtttattcggagataagcc 27452589  T
Q  116 aac 118  Q
    |||    
T  27452588 aac 27452586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 157 - 238
Target Start/End: Original strand, 4052904 - 4052985
Alignment:
Q  157 tgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaatgaaatgcaataagtttcttcttgt 238  Q
    ||||||||| ||||||||| |||| ||| |||||| ||||||||| |||||||||||||||||||||||| ||| |||||||    
T  4052904 tgctagtttccatattcattttaggattccatcttatatctctaccattattatgaatgaaatgcaataaattttttcttgt 4052985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 27452573 - 27452519
Alignment:
Q  156 atgctagttttcatattcatattagaatttcatcttgtatctctactattattat 210  Q
    |||||||||| |||||||||||||||||||||||||||||||||| ||| |||||    
T  27452573 atgctagtttccatattcatattagaatttcatcttgtatctctattataattat 27452519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 238
Target Start/End: Original strand, 40109287 - 40109326
Alignment:
Q  199 tactattattatgaatgaaatgcaataagtttcttcttgt 238  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  40109287 tactattattatgaatgaaatgcaataaatttcttcttgt 40109326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 140
Target Start/End: Original strand, 4052855 - 4052908
Alignment:
Q  87 ctgatgttaggtttattcggagacaagccaacgaagtcgtttatagctttgcta 140  Q
    |||||||||||||||||||||||||| |||||||||| | | |||| |||||||    
T  4052855 ctgatgttaggtttattcggagacaaaccaacgaagttgctcatagttttgcta 4052908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 238
Target Start/End: Complemental strand, 27452515 - 27452479
Alignment:
Q  202 tattattatgaatgaaatgcaataagtttcttcttgt 238  Q
    ||||||||||||||||||||||||| |||||||||||    
T  27452515 tattattatgaatgaaatgcaataaatttcttcttgt 27452479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 143; Significance: 3e-75; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 32957357 - 32957581
Alignment:
Q  17 aaaagtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaag 113  Q
    ||||||||||||||||||||||| ||||| || ||||||||| ||||||| ||||||||||||||| ||||   |||||||||||| |||||||||||||    
T  32957357 aaaagtggcgtctctaattttagcgcagttattaatgattgtagacgtctattagcttctgatttagtaacctctgatgttaggttcattcggagacaag 32957456  T
Q  114 ccaacgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaa 213  Q
    |||||||||||| | |||||||||||| |||| |||||| |||||||||||| |||||||||||||| ||| ||||||||||||||||||||||| ||||    
T  32957457 ccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagtttccatattcatattaggattccatcttgtatctctactattattttgaa 32957556  T
Q  214 tgaaatgcaataagtttcttcttgt 238  Q
    |||||||| ||||||||||||||||    
T  32957557 tgaaatgcgataagtttcttcttgt 32957581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 24 - 238
Target Start/End: Complemental strand, 7435829 - 7435612
Alignment:
Q  24 gcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaagccaacga 120  Q
    |||||||||||||||| | |||||||||||| ||| |||| |||||| ||||||||||| ||||   |||||||||||||||||||||||||| ||||||    
T  7435829 gcgtctctaattttagcgtagtaatcaatgactgtagacgcctgttaacttctgatttagtaacctctgatgttaggtttattcggagacaagtcaacga 7435730  T
Q  121 agtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaatgaaatg 220  Q
    ||||| | |||||||||||| |||| |||||| |||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||| ||||||    
T  7435729 agtcgctaatagctttgctagagtggctttgcgtcatgctagtttccatattcatattaggattccatcttgtatctctactattattatgaacgaaatg 7435630  T
Q  221 caataagtttcttcttgt 238  Q
    |||||| |||||||||||    
T  7435629 caataaatttcttcttgt 7435612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 7597479 - 7597703
Alignment:
Q  17 aaaagtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaag 113  Q
    ||||||||||||||||  ||||| |||||||||||||| ||| ||||| |||||| || | ||||| ||||   ||||||||||||||||||||||||||    
T  7597479 aaaagtggcgtctctagatttagcgcagtaatcaatgactgtagacgtatgttagttttttatttagtaacctctgatgttaggtttattcggagacaag 7597578  T
Q  114 ccaacgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaa 213  Q
    ||| | |||||| | |||||||||||| |||| |||||| | ||||||||||||||||||||||||| ||| |||||| |||||||||| ||||||||||    
T  7597579 ccaccaaagtcgctcatagctttgctagagtggctttgcgtgatgctagttttcatattcatattaggattccatcttatatctctactcttattatgaa 7597678  T
Q  214 tgaaatgcaataagtttcttcttgt 238  Q
    ||||| ||||||| |||||||||||    
T  7597679 tgaaaagcaataaatttcttcttgt 7597703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 88 - 238
Target Start/End: Original strand, 7608471 - 7608621
Alignment:
Q  88 tgatgttaggtttattcggagacaagccaacgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttca 187  Q
    |||||||||||||||||| ||||||||||||||||||  | |||||||||||| |||| |||||| |||||||||||| ||||||||||||| |||| ||    
T  7608471 tgatgttaggtttattcgaagacaagccaacgaagtcactcatagctttgctatagtggctttgcgtcatgctagtttccatattcatattataattcca 7608570  T
Q  188 tcttgtatctctactattattatgaatgaaatgcaataagtttcttcttgt 238  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  7608571 tcttgtatctctactattattatgaatgaaatgcaataaatttcttcttgt 7608621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 91 - 233
Target Start/End: Original strand, 6192539 - 6192681
Alignment:
Q  91 tgttaggtttattcggagacaagccaacgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatct 190  Q
    ||||||||| ||||||||||||||||||||| ||  | ||| |||||||| |||| || | | | |||||||||| |||||||||||||| ||| |||||    
T  6192539 tgttaggttcattcggagacaagccaacgaaatcactcatatctttgctagagtggctctacgttatgctagtttccatattcatattaggattccatct 6192638  T
Q  191 tgtatctctactattattatgaatgaaatgcaataagtttctt 233  Q
    ||||| ||||||||||| |||||||||||||||||||||||||    
T  6192639 tgtatttctactattatcatgaatgaaatgcaataagtttctt 6192681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 238
Target Start/End: Original strand, 12523534 - 12523733
Alignment:
Q  21 gtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataa---ctgatgttaggtttattcggagacaagccaa 117  Q
    |||| |||||||||||||| ||||| |||||||| | | |||| |||||||||||| |||||| ||   |||||||||||||||||||||||||||||||    
T  12523534 gtggtgtctctaattttagcgcagtgatcaatgactatagacgcctgttagcttctaatttaacaaaatctgatgttaggtttattcggagacaagccaa 12523633  T
Q  118 cgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaatgaa 217  Q
    |||||| | | |||| ||||                     ||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  12523634 cgaagttgctcatagttttg---------------------ctagtttccatattcatattaggatttcatcttgtatctctaccattattatgaatgaa 12523712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 129 - 232
Target Start/End: Complemental strand, 34183226 - 34183123
Alignment:
Q  129 atagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaatgaaatgcaataagt 228  Q
    |||||||||||| |||| |||||| ||||| ||||||||||||| ||||| | |||||||||||||||||||||| |||||||||| |||||||||||||    
T  34183226 atagctttgctagagtggctttgcgtcatgttagttttcatatttatattgggatttcatcttgtatctctactactattatgaattaaatgcaataagt 34183127  T
Q  229 ttct 232  Q
    ||||    
T  34183126 ttct 34183123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 27 - 236
Target Start/End: Complemental strand, 31798186 - 31797974
Alignment:
Q  27 tctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaagccaacgaagt 123  Q
    ||||||||||||||||||| ||  | || ||| ||| | ||||||||| |||| || ||||   |||||||||||||||| | |||||||| ||||||||    
T  31798186 tctctaattttagtgcagtgattcaagactgtagacatatgttagcttttgatctagtaacctctgatgttaggtttatttgaagacaagctaacgaagt 31798087  T
Q  124 cgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaatgaaatgcaa 223  Q
       | |||  |||||||    | |||  |||||| |||||||||||||  ||||||| |||||||||||||||||| |||||||||||||| ||||||||    
T  31798086 tactcataaatttgctatgacggcttcacatcattctagttttcatatctatattaggatttcatcttgtatctctgctattattatgaataaaatgcaa 31797987  T
Q  224 taagtttcttctt 236  Q
    ||| ||| |||||    
T  31797986 taaatttattctt 31797974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 48 - 238
Target Start/End: Original strand, 13406068 - 13406261
Alignment:
Q  48 tcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaagccaacgaagtcgtttatagctttgctaaagt 144  Q
    |||||||| ||  |||| |||||||||||||||||  |||   |||||||| |||||||||||||||||||||  |||||  | |||| |||||||   |    
T  13406068 tcaatgatagtaaacgtatgttagcttctgatttagcaacctctgatgttatgtttattcggagacaagccaattaagtcactcatagttttgctaggat 13406167  T
Q  145 gactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaatgaaatgcaataagtttcttcttgt 238  Q
    ||||| |  |||||||||||| |||| ||||||||  |||  ||| |||||||||||| ||||| | |||||||| ||||||| ||||||||||    
T  13406168 gacttcgagtcatgctagtttccataatcatattaagattcgatcgtgtatctctactcttattttaaatgaaatacaataagcttcttcttgt 13406261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 156 - 230
Target Start/End: Complemental strand, 29025314 - 29025240
Alignment:
Q  156 atgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaatgaaatgcaataagttt 230  Q
    ||||||| || ||||||| |||||  ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  29025314 atgctaggttccatattcgtattaagatttcatcttgtatcactactattattatgaatgaaatgcaataagttt 29025240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 6192490 - 6192544
Alignment:
Q  17 aaaagtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttag 71  Q
    ||||||||||||||||||||||| ||||| |  ||||||||||||| ||||||||    
T  6192490 aaaagtggcgtctctaattttagcgcagttaataatgattgtggacatctgttag 6192544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 7607807 - 7607853
Alignment:
Q  17 aaaagtggcgtctctaattttagtgcagtaatcaatgattgtggacg 63  Q
    ||||||||||||||||||||||| | |||||||||||| ||| ||||    
T  7607807 aaaagtggcgtctctaattttagcgtagtaatcaatgactgtagacg 7607853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 143; Significance: 3e-75; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 23769995 - 23769771
Alignment:
Q  17 aaaagtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaag 113  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| || ||| ||||   ||||||||||||||||||||||||||    
T  23769995 aaaagtggcgtctctaattttagcgcagtaatcaatgattgtagacgtctgttagcttcagaattagtaacctctgatgttaggtttattcggagacaag 23769896  T
Q  114 ccaacgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaa 213  Q
    |||||||||||| | |||||||||||| |||  |||||   ||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||    
T  23769895 ccaacgaagtcgctcatagctttgctagagtagctttgttacatgctagtttccatattcatattagaattctatcttgtatctctactattattatgaa 23769796  T
Q  214 tgaaatgcaataagtttcttcttgt 238  Q
    ||||||||||||||||| |||||||    
T  23769795 tgaaatgcaataagtttgttcttgt 23769771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 38451912 - 38451689
Alignment:
Q  17 aaaagtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaag 113  Q
    ||||||||||||||||||||||| ||| |||||||||| ||| |||| |||||||||||||||||| ||||   | ||||||||||| ||||||||||||    
T  38451912 aaaagtggcgtctctaattttagcgcaataatcaatgactgtagacgcctgttagcttctgatttattaacctctaatgttaggttttttcggagacaag 38451813  T
Q  114 ccaacgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaa 213  Q
    |||||||| ||| | |||||||||||| |||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  38451812 ccaacgaaatcgctcatagctttgctagagtggctttgcaccatgctagtttccatattcatattagaatttcatcttgtatct-tactattattatgaa 38451714  T
Q  214 tgaaatgcaataagtttcttcttgt 238  Q
    |||||||||||||||||||||||||    
T  38451713 tgaaatgcaataagtttcttcttgt 38451689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 24477696 - 24477472
Alignment:
Q  17 aaaagtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaag 113  Q
    ||||||||||||||||||||||| |||||||| ||||| ||| || |  ||||||||||||||||| ||||   |||||||||||||||||||||| ||     
T  24477696 aaaagtggcgtctctaattttagcgcagtaatgaatgactgtagatgcatgttagcttctgatttagtaacctctgatgttaggtttattcggagataaa 24477597  T
Q  114 ccaacgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaa 213  Q
    |||||||||||| | |||| ||||||| |||| |||||| | ||||||||||||||||||||||||| ||| |||||| ||||||||||||||| |||||    
T  24477596 ccaacgaagtcgctcatagttttgctagagtggctttgcgttatgctagttttcatattcatattaggattccatcttatatctctactattatgatgaa 24477497  T
Q  214 tgaaatgcaataagtttcttcttgt 238  Q
    |||||||||||||||||||||||||    
T  24477496 tgaaatgcaataagtttcttcttgt 24477472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 45086206 - 45085981
Alignment:
Q  16 caaaagtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaa 112  Q
    |||| ||||||||||||||||||| || || ||||||||||||  ||| |||||||||| ||||||| ||||   |||||||||||||||||||||||||    
T  45086206 caaatgtggcgtctctaattttagcgccgtgatcaatgattgtaaacgactgttagcttatgatttagtaacctctgatgttaggtttattcggagacaa 45086107  T
Q  113 gccaacgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatga 212  Q
    |||||| |||||| | ||||||| |||| |||| ||| || |||||||||||| |||||||||||||| ||| |||||| ||||||||||||||||||||    
T  45086106 gccaacaaagtcgctcatagcttggctagagtggcttcgcgtcatgctagtttccatattcatattaggattccatcttatatctctactattattatga 45086007  T
Q  213 atgaaatgcaataagtttcttcttgt 238  Q
    |||||||| |||||||||||||||||    
T  45086006 atgaaatgaaataagtttcttcttgt 45085981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 22605837 - 22606061
Alignment:
Q  17 aaaagtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaag 113  Q
    ||||||||||||||||||||| | | ||| || ||||||||| | ||||||||||||||||||||| ||||   |||||||||||| | || ||||||||    
T  22605837 aaaagtggcgtctctaatttttgcgtagttattaatgattgtagtcgtctgttagcttctgatttagtaacctctgatgttaggttcaatcagagacaag 22605936  T
Q  114 ccaacgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaa 213  Q
    |||||| ||||| | |||||||||| | ||||  ||||| ||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||    
T  22605937 ccaacggagtcgctcatagctttgcgagagtggttttgcgtcatgctagttttcatattcatattaggattccatcttgtatctctacaattattatgaa 22606036  T
Q  214 tgaaatgcaataagtttcttcttgt 238  Q
    ||||||||||| |||||||||||||    
T  22606037 tgaaatgcaatcagtttcttcttgt 22606061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 17 - 225
Target Start/End: Original strand, 10213737 - 10213948
Alignment:
Q  17 aaaagtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaag 113  Q
    ||||||||||| ||||||||||| |||||||  ||||||||| ||||  ||||||||||||||||| ||||   |||||||||||||||||||||||||     
T  10213737 aaaagtggcgtatctaattttagcgcagtaactaatgattgtagacgcttgttagcttctgatttagtaacctctgatgttaggtttattcggagacaaa 10213836  T
Q  114 ccaacgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaa 213  Q
    |||||||||||| | |||| |||||||  ||| ||| || |||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||    
T  10213837 ccaacgaagtcgctcatagttttgctagggtggcttcgcgtcatgctagtttccatattcatattaagatttcatcttgtatctctactattattatgaa 10213936  T
Q  214 tgaaatgcaata 225  Q
    ||||||||||||    
T  10213937 tgaaatgcaata 10213948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 23407969 - 23407745
Alignment:
Q  17 aaaagtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaag 113  Q
    ||||||| ||||||||||||||||  |||||| ||||||||| ||||  ||||||||||||||||| ||||   | ||||||||||||||||||||||||    
T  23407969 aaaagtgacgtctctaattttagtttagtaattaatgattgtagacgcatgttagcttctgatttagtaacctctaatgttaggtttattcggagacaag 23407870  T
Q  114 ccaacgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaa 213  Q
    | ||| |||||| | |||| |||| ||   || ||| ||||||||||||||| |||||||||||||  ||| |||||| |||||||||||||||||||||    
T  23407869 caaacaaagtcgctcatagttttgttaggatgtcttcgcatcatgctagtttccatattcatattaagattccatcttatatctctactattattatgaa 23407770  T
Q  214 tgaaatgcaataagtttcttcttgt 238  Q
     |||||||||||| |||||||||||    
T  23407769 cgaaatgcaataaatttcttcttgt 23407745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 116 - 237
Target Start/End: Complemental strand, 31411483 - 31411362
Alignment:
Q  116 aacgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaatg 215  Q
    |||||||||||| |||||||||||| ||||||||||  |||| ||||||| |||||||||||||| |||||||||||||| |||| ||||||||||||||    
T  31411483 aacgaagtcgttcatagctttgctagagtgactttgtgtcattctagtttccatattcatattaggatttcatcttgtatatctattattattatgaatg 31411384  T
Q  216 aaatgcaataagtttcttcttg 237  Q
    |||| |||||||||||||||||    
T  31411383 aaatacaataagtttcttcttg 31411362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 129 - 238
Target Start/End: Original strand, 11616665 - 11616774
Alignment:
Q  129 atagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaatgaaatgcaataagt 228  Q
    |||||||||||| ||||||||| | |||||||||||| |||||||||||||| |||  |||||||||||||||||||||| |||||||||||||||||||    
T  11616665 atagctttgctagagtgactttacgtcatgctagtttccatattcatattaggattctatcttgtatctctactattattttgaatgaaatgcaataagt 11616764  T
Q  229 ttcttcttgt 238  Q
    ||||||||||    
T  11616765 ttcttcttgt 11616774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 26 - 238
Target Start/End: Original strand, 1604784 - 1604998
Alignment:
Q  26 gtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaagccaacgaag 122  Q
    ||||||||||  |||||| | |||||||||||| || || || |||||||||||||| ||||   |||| ||||||||||| ||||||||  |||| |||    
T  1604784 gtctctaattaaagtgcattgatcaatgattgttgatgtgtgctagcttctgatttagtaacatctgatattaggtttattaggagacaaatcaacaaag 1604883  T
Q  123 tcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaatgaaatgca 222  Q
    ||||| |||| || |||| ||||  || |  ||||| |||||||| ||||||||||||| || |||||| ||| |||  ||||||||| ||||||| |||    
T  1604884 tcgttcatagtttcgctagagtggattagtgtcatgttagttttcgtattcatattaga-ttccatcttttatatctcttattattataaatgaaacgca 1604982  T
Q  223 ataagtttcttcttgt 238  Q
    ||||||||||||||||    
T  1604983 ataagtttcttcttgt 1604998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 199
Target Start/End: Complemental strand, 40074247 - 40074065
Alignment:
Q  17 aaaagtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaag 113  Q
    ||||| ||||| ||||||| |||||||||| ||||||  |||  ||||||||| ||||||||||||  |||   | |||||||||||||| | |||||||    
T  40074247 aaaagcggcgtttctaattatagtgcagta-tcaatggctgtaaacgtctgtttgcttctgatttagcaacctctaatgttaggtttattag-agacaag 40074150  T
Q  114 ccaacgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctct 199  Q
    ||||| |||||| | |||| ||||||||| || ||| || ||||||||||||||||||||||||||  ||| ||||||||||||||    
T  40074149 ccaacaaagtcgctcatagttttgctaaa-tggcttcgcgtcatgctagttttcatattcatattaagattccatcttgtatctct 40074065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 20214282 - 20214346
Alignment:
Q  174 atattagaatttcatcttgtatctctactattattatgaatgaaatgcaataagtttcttcttgt 238  Q
    ||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  20214282 atattaggatttcattttgtatctctactattattttgaatgaaatgcaataagtttcttcttgt 20214346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 111 - 238
Target Start/End: Original strand, 32025536 - 32025662
Alignment:
Q  111 aagccaacgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattat 210  Q
    ||||||| ||||| | | |||||||||||| ||||||||    |||||||||||| |||||| ||||||||||||||| || ||||||||| ||||||||    
T  32025536 aagccaatgaagttgctcatagctttgctagagtgacttcatgtcatgctagtttccatatttatattagaatttcatgttatatctctacaattattat 32025635  T
Q  211 gaatgaaatgcaataagtttcttcttgt 238  Q
     ||| ||| || ||||||||||||||||    
T  32025636 -aataaaacgctataagtttcttcttgt 32025662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 235
Target Start/End: Original strand, 27177657 - 27177864
Alignment:
Q  31 taattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaagccaacgaagtcgtt 127  Q
    ||||| ||||||||| ||  |||||||| ||||||| ||||||  ||||||| ||||   |||||| |||||||||  |||||||||||||||||| | |    
T  27177657 taattatagtgcagtgattgatgattgtagacgtctattagctcttgatttagtaacctttgatgtcaggtttattatgagacaagccaacgaagtagct 27177756  T
Q  128 tatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaatgaaatgcaataag 227  Q
     |||| ||  |||    | |||||  |||| || |||| |||||||||||||  ||| | |  |||||||||||||||||| | | |||||| |||||||    
T  27177757 catagtttcactaggacggctttgtgtcattcttgtttccatattcatattaagattccgttgtgtatctctactattattttaattgaaatacaataag 27177856  T
Q  228 tttcttct 235  Q
    ||||||||    
T  27177857 tttcttct 27177864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 226
Target Start/End: Original strand, 28317811 - 28317883
Alignment:
Q  154 tcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaatgaaatgcaataa 226  Q
    ||||| || |||||||||| ||||||  |||||||||| |||||||||||||||| | ||| |||||||||||    
T  28317811 tcatgataattttcatatttatattaagatttcatcttatatctctactattattttaaataaaatgcaataa 28317883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 206
Target Start/End: Original strand, 2599233 - 2599266
Alignment:
Q  173 catattagaatttcatcttgtatctctactatta 206  Q
    |||||||| |||||||||||||||||||||||||    
T  2599233 catattaggatttcatcttgtatctctactatta 2599266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 1605079 - 1605115
Alignment:
Q  202 tattattatgaatgaaatgcaataagtttcttcttgt 238  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  1605079 tattattataaataaaatgcaataagtttcttcttgt 1605115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0450 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 17 - 235
Target Start/End: Original strand, 5210 - 5431
Alignment:
Q  17 aaaagtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaag 113  Q
    |||||| |||||||||||||||  ||||| || ||||||||| |||| |||||||||| ||||||| ||||   |||||||||||| |||||||||||||    
T  5210 aaaagtagcgtctctaattttaacgcagttattaatgattgtagacgcctgttagcttttgatttagtaacctctgatgttaggttcattcggagacaag 5309  T
Q  114 ccaacgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaa 213  Q
    |||||||||||| | ||| |||||||| |||||||||||||||||||| ||| ||||||||||||| |||| ||||||||||||||||||||||||||||    
T  5310 ccaacgaagtcgctcataactttgctatagtgactttgcatcatgctaatttccatattcatattaaaattccatcttgtatctctactattattatgaa 5409  T
Q  214 tgaaatgcaataagtttcttct 235  Q
    ||||||||||||||||||||||    
T  5410 tgaaatgcaataagtttcttct 5431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 20 - 238
Target Start/End: Original strand, 187048 - 187269
Alignment:
Q  20 agtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaagcca 116  Q
    |||||||||||||||||||| ||| | || ||||||||| ||||||||||||||||||||||| ||||   | |||||||||| ||||||||||||||||    
T  187048 agtggcgtctctaattttagcgcaattattaatgattgtagacgtctgttagcttctgatttagtaacctctaatgttaggttcattcggagacaagcca 187147  T
Q  117 acgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaatga 216  Q
    ||||| ||| | |||||||||||| |||| |||||| |||||||||||| |||||||||||||| ||| ||||||||||||||||||||||| |||||||    
T  187148 acgaattcgctcatagctttgctatagtggctttgcgtcatgctagtttccatattcatattaggattccatcttgtatctctactattattttgaatga 187247  T
Q  217 aatgcaataagtttcttcttgt 238  Q
    ||||||||||||||||||||||    
T  187248 aatgcaataagtttcttcttgt 187269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 136; Significance: 4e-71; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 20 - 238
Target Start/End: Original strand, 14160386 - 14160607
Alignment:
Q  20 agtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaagcca 116  Q
    |||||||||||||||||||| ||| | || ||||||||| ||||||||||||||||||||||| ||||   |||||||||||| ||||||||||||||||    
T  14160386 agtggcgtctctaattttagcgcaattattaatgattgtagacgtctgttagcttctgatttagtaacctctgatgttaggttcattcggagacaagcca 14160485  T
Q  117 acgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaatga 216  Q
    ||||||||| | |||||||||||| |||| |||||| |||||||||||| | |||||||||||| ||| | ||||||||||||||||||||| |||||||    
T  14160486 acgaagtcgctcatagctttgctagagtggctttgcgtcatgctagtttgcgtattcatattaggattccttcttgtatctctactattattttgaatga 14160585  T
Q  217 aatgcaataagtttcttcttgt 238  Q
    ||||||||||||||||||||||    
T  14160586 aatgcaataagtttcttcttgt 14160607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 20 - 230
Target Start/End: Complemental strand, 25611580 - 25611367
Alignment:
Q  20 agtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaagcca 116  Q
    |||||||||||||||||||| ||||| || ||||| ||| ||||||||||||||||||||||| ||||   |||||||||||| ||||||||||||||||    
T  25611580 agtggcgtctctaattttagcgcagttattaatgaatgtagacgtctgttagcttctgatttagtaacctctgatgttaggttcattcggagacaagcca 25611481  T
Q  117 acgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaatga 216  Q
    ||||||||| | |||||||||||| |||| |||||| |||||||||||| |||||||||||||| ||| ||||||||||||||||||||||| |||||||    
T  25611480 acgaagtcgctcatagctttgctagagtggctttgcgtcatgctagtttccatattcatattaggattccatcttgtatctctactattattttgaatga 25611381  T
Q  217 aatgcaataagttt 230  Q
    ||||||||||||||    
T  25611380 aatgcaataagttt 25611367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 9360661 - 9360885
Alignment:
Q  17 aaaagtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaag 113  Q
    ||||||||||| ||||||||||| |||||||||||||| ||| |||| ||||||||||||| |||| ||||   ||||||||||||||||||||||||||    
T  9360661 aaaagtggcgtttctaattttagcgcagtaatcaatgactgtagacgcctgttagcttctgttttagtaacctctgatgttaggtttattcggagacaag 9360760  T
Q  114 ccaacgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaa 213  Q
    |||||||||||| | |||| ||||||| |||   ||||| |||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||    
T  9360761 ccaacgaagtcgatcatagttttgctagagtagttttgcgtcatgctagtttccatattcatattaggattccatcttgtatctctactattattatgaa 9360860  T
Q  214 tgaaatgcaataagtttcttcttgt 238  Q
    |||||| ||||||||||||||||||    
T  9360861 tgaaatacaataagtttcttcttgt 9360885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 23362208 - 23362432
Alignment:
Q  17 aaaagtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaag 113  Q
    |||||||| |||||||||||||| ||||| || ||||||||| ||||||||||||||||||||||| ||||   |||||| ||||| |||||||||||||    
T  23362208 aaaagtggtgtctctaattttagcgcagttattaatgattgtagacgtctgttagcttctgatttagtaacctctgatgtaaggttcattcggagacaag 23362307  T
Q  114 ccaacgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaa 213  Q
    ||||| |||||| | |||||||||||| |||| |||||| |||||||||||| |||||||||||||| ||| ||||||||||||||||||||||| ||||    
T  23362308 ccaacaaagtcgctcatagctttgctagagtggctttgcgtcatgctagtttccatattcatattaggattccatcttgtatctctactattattttgaa 23362407  T
Q  214 tgaaatgcaataagtttcttcttgt 238  Q
    ||||||||||||| |||||||||||    
T  23362408 tgaaatgcaataaatttcttcttgt 23362432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 3962511 - 3962292
Alignment:
Q  20 agtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaagcca 116  Q
    |||||||||||||||||||| ||||| || ||||||||| || |||||||||||||||||||| ||||   |||||||||||| ||||||||||||||||    
T  3962511 agtggcgtctctaattttagcgcagttattaatgattgtagatgtctgttagcttctgatttagtaacctctgatgttaggttcattcggagacaagcca 3962412  T
Q  117 acgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaatga 216  Q
    ||||||| | | |||||||||||| |||| |||||| |||||||||||| ||||||| |||||| ||| ||||||||||||||||||||||| |||||||    
T  3962411 acgaagttgctcatagctttgctagagtggctttgcgtcatgctagtttccatattcgtattaggattccatcttgtatctctactattattttgaatga 3962312  T
Q  217 aatgcaataagtttcttctt 236  Q
    ||||||||||| ||||||||    
T  3962311 aatgcaataagcttcttctt 3962292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 4595246 - 4595026
Alignment:
Q  21 gtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaagccaa 117  Q
    |||||||||||||||| || ||| |||||||||| ||| ||||||||||||||||||||||| ||||   ||||||||||||| ||||||||||| ||||    
T  4595246 gtggcgtctctaatttaagcgcaataatcaatgactgtagacgtctgttagcttctgatttagtaacctctgatgttaggtttgttcggagacaaaccaa 4595147  T
Q  118 cgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaatgaa 217  Q
    |||||||| | |||| ||||||| ||||  |||   |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  4595146 cgaagtcgctcatagttttgctagagtggttttctgtcatgctagtttccatattcatattaggatttcatcttgtatctctactattattatgaatgaa 4595047  T
Q  218 atgcaataagtttcttcttgt 238  Q
    ||||||||||||| |||||||    
T  4595046 atgcaataagtttattcttgt 4595026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 30466587 - 30466813
Alignment:
Q  17 aaaagtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaag 113  Q
    ||||||||||||||||||||||| ||||| || ||||||||| |||||||||||||||||||| || ||||   ||| |||||||| |||||||||||||    
T  30466587 aaaagtggcgtctctaattttagcgcagttattaatgattgtagacgtctgttagcttctgatatagtaacctctgaagttaggttcattcggagacaag 30466686  T
Q  114 ccaacgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactatta--ttatg 211  Q
    |||||||||||| | |||| ||||||| |||| |||||| | |||||||||| |||||||||||||| ||| |||||||||||||||||||||  || ||    
T  30466687 ccaacgaagtcgctcatagttttgctagagtggctttgcgttatgctagtttccatattcatattaggattccatcttgtatctctactattattttttg 30466786  T
Q  212 aatgaaatgcaataagtttcttcttgt 238  Q
    |||||||||||||||||||||| ||||    
T  30466787 aatgaaatgcaataagtttctttttgt 30466813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 40187277 - 40187502
Alignment:
Q  17 aaaagtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaag 113  Q
    ||||||||||||||||||||||| |||||||||||||| ||| ||||  ||||| ||||||||||| ||||   |||||||||||||||| |||||||||    
T  40187277 aaaagtggcgtctctaattttagcgcagtaatcaatgactgtagacgcttgttaacttctgatttagtaacctttgatgttaggtttatttggagacaag 40187376  T
Q  114 ccaacgaagtcgtttatagcttt-gctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatga 212  Q
    ||||||||  |  | |||| ||| | || ||||  ||||| || |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  40187377 ccaacgaaaacactcatagtttttgttagagtggttttgcgtcttgctagttttcatattcatattaggattccatcttgtatctctactattattatga 40187476  T
Q  213 atgaaatgcaataagtttcttcttgt 238  Q
    ||||||||||||||||||||||||||    
T  40187477 atgaaatgcaataagtttcttcttgt 40187502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 42851884 - 42852111
Alignment:
Q  17 aaaagtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaag 113  Q
    ||||||||||| |||||||||||||||||||||||||| ||| ||||  ||||||||||||| ||| ||||   |||||||||||||||||||||||||     
T  42851884 aaaagtggcgtatctaattttagtgcagtaatcaatgactgtagacgcgtgttagcttctgacttagtaacctctgatgttaggtttattcggagacaat 42851983  T
Q  114 ccaacgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctc---tactattattat 210  Q
    |||||||||||| | |||| |||||||| ||| |||||| ||||| |||||| |||||||||||||| ||| |||||| ||||||   || |||||||||    
T  42851984 ccaacgaagtcgctcatagttttgctaacgtggctttgcgtcatgttagtttccatattcatattaggattccatcttatatctctattattattattat 42852083  T
Q  211 gaatgaaatgcaataagtttcttcttgt 238  Q
    |||||||||| |||||||||||||||||    
T  42852084 gaatgaaatggaataagtttcttcttgt 42852111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 66 - 238
Target Start/End: Complemental strand, 8151026 - 8150851
Alignment:
Q  66 tgttagcttctgatttaataac---tgatgttaggtttattcggagacaagccaacgaagtcgtttatagctttgctaaagtgactttgcatcatgctag 162  Q
    ||||||||||||||||| ||||   ||||||||||||||||||||||||||| |||||||||| | |||| |||||||  |||||||||| |||| ||||    
T  8151026 tgttagcttctgatttagtaacctctgatgttaggtttattcggagacaagcaaacgaagtcgctcatagttttgctagcgtgactttgcgtcatactag 8150927  T
Q  163 ttttcatattcatattagaatttcatcttgtatctctactattattatgaatgaaatgcaataagtttcttcttgt 238  Q
    ||| || ||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8150926 tttccaaattcatattaggattccatcttgtatctctactattattatgaatgaaatgtaataagtttcttcttgt 8150851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 40 - 203
Target Start/End: Complemental strand, 28424076 - 28423910
Alignment:
Q  40 tgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaagccaacgaagtcgtttatagcttt 136  Q
    |||||| || ||||||||| ||| ||||||||||||||||||| ||||   |||||||||||| ||||||||||||||||||||||||| | |||||||     
T  28424076 tgcagttattaatgattgtagacttctgttagcttctgatttagtaacctctgatgttaggttcattcggagacaagccaacgaagtcgctcatagcttc 28423977  T
Q  137 gctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctacta 203  Q
    |||| |||| ||||||||||||||||||| ||||||||||| |||||| ||||||||||||| ||||    
T  28423976 gctagagtggctttgcatcatgctagtttccatattcatatcagaattccatcttgtatctcaacta 28423910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 45 - 236
Target Start/End: Original strand, 9026511 - 9026702
Alignment:
Q  45 taatcaatgattgtggacgtctgttagcttctgatttaataact---gatgttaggtttattcggagacaagccaacgaagtcgtttatagctttgctaa 141  Q
    |||||||||||||| |||| | |||||||||||||||| |||||   |||||||||||||||| |||||||| ||||||||||| | |||| |||||||     
T  9026511 taatcaatgattgtagacgccggttagcttctgatttagtaacttatgatgttaggtttattcagagacaagtcaacgaagtcgctcatagttttgctag 9026610  T
Q  142 agtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaatgaaatgcaataagtttcttctt 236  Q
    ||||  ||||| |||||||| ||| |||||||||||||  ||| ||||||||||||   |||||||||||||||||||| |||||||||||||||    
T  9026611 agtggatttgcgtcatgctaatttccatattcatattaagattccatcttgtatct---ctattattatgaatgaaatgaaataagtttcttctt 9026702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 87 - 238
Target Start/End: Original strand, 5866209 - 5866360
Alignment:
Q  87 ctgatgttaggtttattcggagacaagccaacgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttc 186  Q
    |||||||||||||||||||||||||||| ||| || | | | |||||||| ||| |||| ||| |  ||||| || ||| |||||||||||||| |||||    
T  5866209 ctgatgttaggtttattcggagacaagcaaacaaaattgctcatagctttcctagagtggcttcgtgtcatgttaatttccatattcatattaggatttc 5866308  T
Q  187 atcttgtatctctactattattatgaatgaaatgcaataagtttcttcttgt 238  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  5866309 atcttgtatctctactattattatgaatgaaatgcaataaatttcttcttgt 5866360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 148 - 238
Target Start/End: Original strand, 6596199 - 6596289
Alignment:
Q  148 tttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaatgaaatgcaataagtttcttcttgt 238  Q
    ||||| |||||||||||| |||||||||||||| ||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  6596199 tttgcgtcatgctagtttccatattcatattaggattccatcttgtatatctactattattttgaatgaaatgcaataagtttcttcttgt 6596289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 185
Target Start/End: Complemental strand, 24267942 - 24267771
Alignment:
Q  17 aaaagtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataa---ctgatgttaggtttattcggagacaag 113  Q
    ||||||||||||||||||||||| |||||||| ||||||||| ||||  |||||| |||||||||| |||   || ||||||||||||||| ||||||||    
T  24267942 aaaagtggcgtctctaattttagcgcagtaattaatgattgtagacgcttgttagtttctgatttagtaacctctaatgttaggtttattcagagacaag 24267843  T
Q  114 ccaacgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaattt 185  Q
     ||| ||||||| | |||| |||||||   ||||||||| ||||| |||||| |||||| || |||| ||||    
T  24267842 tcaatgaagtcgctcatagttttgctaggatgactttgcgtcatgttagtttccatatttatgttaggattt 24267771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 62 - 238
Target Start/End: Complemental strand, 21947086 - 21946920
Alignment:
Q  62 cgtctgttagcttctgatttaataactgatgttaggtttattcggagacaagccaacgaagtcgtttatagctttgctaaagtgactttgcatcatgcta 161  Q
    ||||||||||||||||||||| ||||   |   | |||||||||||||||||||||| |||||| | |||| |||||||   ||||||||||||||| ||    
T  21947086 cgtctgttagcttctgatttagtaacctct---aagtttattcggagacaagccaacaaagtcgctcatagttttgctaggatgactttgcatcatgtta 21946990  T
Q  162 gttttcatattcatattagaatttcatcttgtatctctactattattatgaatgaaatgcaataagtttcttcttgt 238  Q
    |||        |||||||  || ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||    
T  21946989 gttc-------catattaagatctcatcttgtatatctactattattataaatgaaatggaataagtttcttcttgt 21946920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 72 - 238
Target Start/End: Original strand, 2405146 - 2405314
Alignment:
Q  72 cttctgatttaataac--tgatgttaggtttattcggagacaagccaacgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcat 169  Q
    ||||||||||| ||||  |||||||||| ||||| ||||||| | |||||||||| ||||| | || |||  |||| || ||  |||||||||||||| |    
T  2405146 cttctgatttagtaaccttgatgttagggttattaggagacatgtcaacgaagtcatttattgtttcgctcgagtggctctgtgtcatgctagttttcgt 2405245  T
Q  170 attcatattagaatttcatcttgtatctctactattattatgaatgaaatgcaataagtttcttcttgt 238  Q
    ||| ||||||  ||| |||||| |||||||  ||||||||| |||||||| |||||||||| |||||||    
T  2405246 atttatattaagattccatcttatatctctcatattattataaatgaaatacaataagttttttcttgt 2405314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 35827485 - 35827708
Alignment:
Q  16 caaaagtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataa---ctgatgttaggtttattcggagacaa 112  Q
    ||||||||| || ||||||| ||||||||| |||||||||| |  |||  |||||| || |||| ||| ||   || ||||||||||||||| |||||||    
T  35827485 caaaagtggtgtttctaattatagtgcagtgatcaatgattataaacgcatgttagtttatgatctaacaatctcttatgttaggtttattctgagacaa 35827584  T
Q  113 gccaacgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatga 212  Q
    ||| || |||| | | |||||||||||| | ||  ||    |||||||| ||| |||||||||||||  ||||||||||||||||||  |  |||||| |    
T  35827585 gcctacaaagttgctcatagctttgctagaatggattcatgtcatgctaatttccatattcatattaagatttcatcttgtatctctctttatattataa 35827684  T
Q  213 atgaaatgcaataagtttcttctt 236  Q
    || ||||||||||| |||||||||    
T  35827685 ataaaatgcaataaatttcttctt 35827708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 238
Target Start/End: Original strand, 12152783 - 12152828
Alignment:
Q  193 tatctctactattattatgaatgaaatgcaataagtttcttcttgt 238  Q
    |||||||||||||||| | ||||||||||||||| |||| ||||||    
T  12152783 tatctctactattattttaaatgaaatgcaataaatttcatcttgt 12152828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 25506029 - 25506102
Alignment:
Q  154 tcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaatgaaatgcaataag 227  Q
    ||||| |||||||  || ||||||||  |||  ||||||||||||||||||| |||| ||||||||||| ||||    
T  25506029 tcatgttagtttttgtagtcatattaagattgtatcttgtatctctactatttttataaatgaaatgcactaag 25506102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 238
Target Start/End: Complemental strand, 19290424 - 19290392
Alignment:
Q  206 attatgaatgaaatgcaataagtttcttcttgt 238  Q
    ||||||||||||||||||||||||| |||||||    
T  19290424 attatgaatgaaatgcaataagttttttcttgt 19290392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0577 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: scaffold0577
Description:

Target: scaffold0577; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 2419 - 2195
Alignment:
Q  17 aaaagtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaag 113  Q
    |||| ||||||||||||||||||  | || || ||||||||| ||||||||||||||||||||||| ||||   |||||||||||| ||||| |||||||    
T  2419 aaaaatggcgtctctaattttagcacggttattaatgattgtagacgtctgttagcttctgatttagtaacctctgatgttaggttcattcgcagacaag 2320  T
Q  114 ccaacgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaa 213  Q
    |||||||||||| | |||||||||||| ||||||||||| |||||||||||| |||||||||||||| |||  |||||||||||||||||||||||||||    
T  2319 ccaacgaagtcgctcatagctttgctagagtgactttgcgtcatgctagtttccatattcatattaggattctatcttgtatctctactattattatgaa 2220  T
Q  214 tgaaatgcaataagtttcttcttgt 238  Q
    |||||||||| |||||| |||||||    
T  2219 tgaaatgcaagaagtttattcttgt 2195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 6632 - 6856
Alignment:
Q  17 aaaagtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaag 113  Q
    |||| |||||||||||||||||| ||||| || |||||||||  |||||| ||||||||||||||| ||||   |||||||||||| |||||||||||||    
T  6632 aaaaatggcgtctctaattttagcgcagttattaatgattgtaaacgtctattagcttctgatttagtaacctctgatgttaggttcattcggagacaag 6731  T
Q  114 ccaacgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaa 213  Q
     ||||||||||| | |||||||||||| || | |||||| |||||||||||| |||||||||||||| ||| ||||||||||||||||||||||| ||||    
T  6732 acaacgaagtcgctcatagctttgctagagcggctttgcgtcatgctagtttccatattcatattaggattccatcttgtatctctactattattttgaa 6831  T
Q  214 tgaaatgcaataagtttcttcttgt 238  Q
    ||||||||||||||||| |||||||    
T  6832 tgaaatgcaataagtttattcttgt 6856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 26 - 238
Target Start/End: Original strand, 58328 - 58543
Alignment:
Q  26 gtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaagccaacgaag 122  Q
    |||||||||||||| | |||||| ||||| ||| |||| || ||||||||||||||||||||   |||||||||||||||| | ||||||||||||||||    
T  58328 gtctctaattttagcgtagtaataaatgactgtagacgcctattagcttctgatttaataacctctgatgttaggtttattggaagacaagccaacgaag 58427  T
Q  123 tcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaatgaaatgca 222  Q
    ||  | |||||||||||  |||| ||||   |||||||||||| ||||||||||||||  || |||||||||||||||||||||||||||||||||||||    
T  58428 tctctcatagctttgctcgagtggctttatgtcatgctagtttccatattcatattagggttccatcttgtatctctactattattatgaatgaaatgca 58527  T
Q  223 ataagtttcttcttgt 238  Q
    ||||||||||||||||    
T  58528 ataagtttcttcttgt 58543  T

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Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 93 - 238
Target Start/End: Original strand, 48522162 - 48522307
Alignment:
Q  93 ttaggtttattcggagacaagccaacgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttg 192  Q
    ||||||||||||||||||||| ||||||||||| | |||||||||||| |||| |||||| |||||||||||| |||||||||||||  ||| ||||||     
T  48522162 ttaggtttattcggagacaagtcaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagtttccatattcatattaagattccatctta 48522261  T
Q  193 tatctctactattattatgaatgaaatgcaataagtttcttcttgt 238  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  48522262 tatctctactattattataaatgaaatgcaataagtttcttcttgt 48522307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 42 - 210
Target Start/End: Original strand, 25698534 - 25698705
Alignment:
Q  42 cagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaagccaacgaagtcgtttatagctttgc 138  Q
    |||| |||||||||||| ||| | ||||| |||||||||||  |||   |||||||| ||||||| ||||||||| |||||||||| || |||| || ||    
T  25698534 cagtgatcaatgattgtagacatatgttaacttctgatttagcaacctttgatgttacgtttatttggagacaagtcaacgaagtctttcatagattagc 25698633  T
Q  139 taaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattat 210  Q
     |  || |||||| |||||||||||||||||||| |||||| |||||||||  |||| | |||| |||||||    
T  25698634 aatggtaactttgtatcatgctagttttcatatttatattaaaatttcatcaggtatatgtactcttattat 25698705  T

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Target: chr1; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 157 - 238
Target Start/End: Complemental strand, 25070903 - 25070822
Alignment:
Q  157 tgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaatgaaatgcaataagtttcttcttgt 238  Q
    ||||||||| ||||||||| |||| ||| |||||| ||||||||| |||||||||||||||||||||||| ||| |||||||    
T  25070903 tgctagtttccatattcattttaggattccatcttatatctctaccattattatgaatgaaatgcaataaattttttcttgt 25070822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 29 - 238
Target Start/End: Original strand, 19956467 - 19956676
Alignment:
Q  29 tctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaagccaacgaagtcg 125  Q
    ||||||| ||||||||| |||||||||| | || || |||||| |||| |||||  |||   | || ||| ||||||| |||||||| ||||||||||||    
T  19956467 tctaattatagtgcagtgatcaatgattttagatgtttgttagtttctaatttagcaacctcttattttaagtttatttggagacaaaccaacgaagtcg 19956566  T
Q  126 tttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaatgaaatgcaata 225  Q
     |||||| |||||||  ||  | |  |  | |||||   | ||||| |||||||| ||| |||||||||||| || ||||||||||||||||||| ||||    
T  19956567 cttatagttttgctagggttgcctcccgccttgcta---tccatatgcatattaggattccatcttgtatctataatattattatgaatgaaatggaata 19956663  T
Q  226 agtttcttcttgt 238  Q
    |||||||||||||    
T  19956664 agtttcttcttgt 19956676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 140
Target Start/End: Complemental strand, 25071021 - 25070899
Alignment:
Q  21 gtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaagccaa 117  Q
    |||| |||||||||||||| ||||| |||||||| ||| ||||  ||||||||||| |||||  |||   ||||||||||||||||||||||||| ||||    
T  25071021 gtggtgtctctaattttagcgcagtgatcaatgactgtagacgcatgttagcttctaatttagcaacctctgatgttaggtttattcggagacaaaccaa 25070922  T
Q  118 cgaagtcgtttatagctttgcta 140  Q
    |||||| | | |||| |||||||    
T  25070921 cgaagttgctcatagttttgcta 25070899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 233
Target Start/End: Complemental strand, 15393583 - 15393504
Alignment:
Q  154 tcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaatgaaatgcaataagtttctt 233  Q
    |||||||| ||||  |||||||||||  ||||||||||||||||||||| ||||||| ||||||||||| |||| |||||    
T  15393583 tcatgctaatttttgtattcatattaagatttcatcttgtatctctactgttattataaatgaaatgcattaagcttctt 15393504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 238
Target Start/End: Original strand, 26347389 - 26347485
Alignment:
Q  142 agtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaatgaaatgcaataagtttcttcttgt 238  Q
    |||| |||| |||||| ||| |||  ||||| ||||||  ||| ||||||||||||||||||||||||||||| ||||  ||||| |||||||||||    
T  26347389 agtggctttacatcatactaatttctatatttatattatgattccatcttgtatctctactattattatgaataaaataaaataaatttcttcttgt 26347485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 222
Target Start/End: Original strand, 11079872 - 11080068
Alignment:
Q  29 tctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaagccaacgaagtcg 125  Q
    ||||||| ||||| ||| || || |||||| |||   ||||||||||  ||||||||||   | |||||||||| ||| |||||||| |||||||||||     
T  11079872 tctaattatagtgaagtgattaacgattgtagacacatgttagcttcaaatttaataacatcttatgttaggttcattaggagacaaaccaacgaagtct 11079971  T
Q  126 tttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaatgaaatgca 222  Q
     |||||| || || |  | ||||  |  ||| ||||||||   ||||||||| || ||| |||||||||||||||| |||||||| |||||||||||    
T  11079972 cttatagtttagcaagggcgactccgtgtcaggctagtttctgtattcatatcaggattccatcttgtatctctacgattattataaatgaaatgca 11080068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 48518980 - 48519045
Alignment:
Q  17 aaaagtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgattta 82  Q
    ||||||| ||||||| ||||||| ||| |||||||||| | | |||||||||||||||||||||||    
T  48518980 aaaagtgacgtctctgattttagcgcaataatcaatgactatagacgtctgttagcttctgattta 48519045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 222
Target Start/End: Original strand, 20621464 - 20621532
Alignment:
Q  154 tcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaatgaaatgca 222  Q
    |||| ||||||||| ||||||||||| ||||  |||||||||||||||| ||||||| || ||||||||    
T  20621464 tcatactagttttcgtattcatattaaaattctatcttgtatctctacttttattataaaggaaatgca 20621532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 15327485 - 15327525
Alignment:
Q  87 ctgatgttaggtttattcggagacaagccaacgaagtcgtt 127  Q
    ||||||||||||| ||| ||||||||||||| |||||||||    
T  15327485 ctgatgttaggttcattaggagacaagccaatgaagtcgtt 15327525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 216381 - 216576
Alignment:
Q  17 aaaagtggcgtctctaattttagtgcagtaatcaatgattgtggacgtctgttagcttctgatttaataac---tgatgttaggtttattcggagacaag 113  Q
    |||| |||| ||| ||||||||| ||| |||||||||| ||| ||||  |||||| |||||||||| ||||   ||||||||||||||||||||||||||    
T  216381 aaaaatggcatctttaattttagcgcaataatcaatgactgtagacgcatgttagattctgatttagtaacctttgatgttaggtttattcggagacaag 216480  T
Q  114 ccaacgaagtcgtttatagctttgctaaagtgactttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattatta 209  Q
    |||||||||||| | ||  |||||||| |||| ||||||  |||||||||||||||||||||||||| ||| |||||  |||||||||||||||||    
T  216481 ccaacgaagtcgctcattcctttgctagagtggctttgcgccatgctagttttcatattcatattaggattccatctaatatctctactattatta 216576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 146 - 230
Target Start/End: Complemental strand, 5400 - 5316
Alignment:
Q  146 actttgcatcatgctagttttcatattcatattagaatttcatcttgtatctctactattattatgaatgaaatgcaataagttt 230  Q
    ||||||| ||||| ||||||| ||||||||||||  ||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  5400 actttgcgtcatgttagtttttatattcatattaagattccatcttgtatctctactattatcatgaatgaaatgcaataagttt 5316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 20703 - 20773
Alignment:
Q  168 atattcatattagaatttcatcttgtatctctactattattatgaatgaaatgcaataagtttcttcttgt 238  Q
    ||||||||||||  ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  20703 atattcatattaagattacatcttgtatctctactattattataaatgaaatgcaataagtttcttcttgt 20773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 124
Target Start/End: Original strand, 20650 - 20686
Alignment:
Q  88 tgatgttaggtttattcggagacaagccaacgaagtc 124  Q
    |||||||||||||| || |||||||||||||||||||    
T  20650 tgatgttaggtttaatcagagacaagccaacgaagtc 20686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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