View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16794_low_2 (Length: 477)
Name: NF16794_low_2
Description: NF16794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16794_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 9 - 455
Target Start/End: Complemental strand, 7267228 - 7266775
Alignment:
| Q |
9 |
agtgagatgaagatttagagtaaagatttgaaaaagattnnnnnnnntttgtcacggaatgattttattttttaaggatcagccacaaatctttttgaaa |
108 |
Q |
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| T |
7267228 |
agtgagatgaaggtttagaataaagatttaaaaaagattaaaaaaaaattgtcacggaatgattttattttttaaggatcagccacaaatctttttgaaa |
7267129 |
T |
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| Q |
109 |
tgacttttcattaatttattgcaataagattggtcaagtgacgatttgtataaatttaaattatcttcatagtcgtttacttaattttcattaactaatt |
208 |
Q |
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| T |
7267128 |
tgactttttattaatttattgcaataagattggtcaagtgacgatttgtataaatttaaattatcttcatagtcgtttacttaattttcattaactaatt |
7267029 |
T |
|
| Q |
209 |
cagttttcctcaaaagaaaaattaactaattttgttataataaaggcaataatttttcctcaacaagcatgctattatgtcattttgaattgaggagtgt |
308 |
Q |
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| T |
7267028 |
cagttttcctcaaaagaaaaattaactaattttgttataataaaggcaataatttttcctcaacaagcatgctattatgtcattttgaattgaggagtgt |
7266929 |
T |
|
| Q |
309 |
taacgcacaattagggatgacgacaagtattctttgagtagatactatagttttcatctctatacctttataaataaattcccacccgaacacataccct |
408 |
Q |
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| T |
7266928 |
taacgcacaattagggatgacgacaagtattctttgagtagatactatagttttcatctctatacctttataaataaattcccacccgaacacataccct |
7266829 |
T |
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| Q |
409 |
catgggta-------ataagtttggtgctagccatatccgaaggacacttatcc |
455 |
Q |
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| T |
7266828 |
catgggtaataactaataagtttggtgctagccatatacgaaggacacttatcc |
7266775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 13 - 357
Target Start/End: Complemental strand, 7279584 - 7279241
Alignment:
| Q |
13 |
agatgaagatttagagtaaagatttgaaaaagattnnnnnnnntttgtcacggaatgattttattttttaaggatcagccacaaatctttttgaaatgac |
112 |
Q |
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| T |
7279584 |
agatgaagatttagagtaaagatttgaaaaagaataaaaaaaatt-gtcacggaatgattttattttttaaggatcagccacaaatctttttgaaatgac |
7279486 |
T |
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| Q |
113 |
ttttcattaatttattgcaataagattggtcaagtgacgatttgtataaatttaaattatcttcatagtcgtttacttaattttcattaactaattcagt |
212 |
Q |
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| T |
7279485 |
gttttattaatttattgcaataagattggtcaagtgacgatttgtataaatttaaattatcttcatagtcttttacttaattttcactaactaattcagt |
7279386 |
T |
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| Q |
213 |
tttcctcaaaagaaaaattaactaattttgttataataaaggcaataatttttcctcaacaagcatgctattatgtcattttgaattgaggagtgttaac |
312 |
Q |
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| T |
7279385 |
tttcctcaaaaaaaaaattaactaattttgttataataaaggcaataatttttcctcaacaagcatgctattatgtcattttgaattgaggagtgttagc |
7279286 |
T |
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| Q |
313 |
gcacaattagggatgacgacaagtattctttgagtagatactata |
357 |
Q |
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| T |
7279285 |
gcacaattagggatgataacaagtattctttgagtaggtactata |
7279241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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