View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16794_low_4 (Length: 383)

Name: NF16794_low_4
Description: NF16794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16794_low_4
NF16794_low_4
[»] chr4 (7 HSPs)
chr4 (17-366)||(7637584-7637933)
chr4 (21-338)||(7615777-7616094)
chr4 (17-363)||(7606756-7607102)
chr4 (21-347)||(7629157-7629483)
chr4 (25-366)||(7655401-7655739)
chr4 (97-244)||(39098306-39098453)
chr4 (112-249)||(39075873-39076010)
[»] chr7 (4 HSPs)
chr7 (19-366)||(8935356-8935703)
chr7 (123-366)||(8910525-8910764)
chr7 (19-279)||(8934415-8934675)
chr7 (19-270)||(8929960-8930211)
[»] chr3 (2 HSPs)
chr3 (111-341)||(8103018-8103248)
chr3 (111-355)||(40146736-40146977)
[»] chr6 (1 HSPs)
chr6 (102-365)||(6501029-6501288)
[»] chr8 (2 HSPs)
chr8 (219-337)||(15190642-15190757)
chr8 (112-176)||(34174825-34174889)


Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 17 - 366
Target Start/End: Complemental strand, 7637933 - 7637584
Alignment:
Q  17 agcagagaatacttgtgttgcagacatcctagaacccacctacgtacctccaattgttgatttattatttgctttatccgaagtaagaagctatgaaggc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7637933 agcagagaatacttgtgttgcagacatcctagaacccacctacgtacctccaattgttgatttattatttgctttatccgaagtaagaagctatgaaggc 7637834  T
Q  117 acatcaaaaccattgttggcagttcaagtaacggagctagttgacggtattttcattggttgctcatttaaccatgttgtcgttgacggaaagtccgtgt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7637833 acatcaaaaccattgttggcagttcaagtaacggagctagttgacggtattttcattggttgctcatttaaccatgttgtcgttgacggaaagtccgtgt 7637734  T
Q  217 ggcatttcatcaattcctgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttct 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  7637733 ggcatttcatcaattcctgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttca 7637634  T
Q  317 acggcctatacgatttcctttcactttggagcaacaaaatgatcactctg 366  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7637633 acggcctatacgatttcctttcactttggagcaacaaaatgatcactctg 7637584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 21 - 338
Target Start/End: Complemental strand, 7616094 - 7615777
Alignment:
Q  21 gagaatacttgtgttgcagacatcctagaacccacctacgtacctccaattgttgatttattatttgctttatccgaagtaagaagctatgaaggcacat 120  Q
    ||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||| ||| || |||||| |||  ||   |||||| |||||||| |    
T  7616094 gagaatacttgtgttgctgacatcctagaacctacctatgtacctccaattgttgattcatttttcgctttaaccggggttgaaagctacgaaggcacct 7615995  T
Q  121 caaaaccattgttggcagttcaagtaacggagctagttgacggtattttcattggttgctcatttaaccatgttgtcgttgacggaaagtccgtgtggca 220  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||| |||| ||||||||    
T  7615994 caaaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtggca 7615895  T
Q  221 tttcatcaattcctgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttctacgg 320  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |    
T  7615894 tttcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaacag 7615795  T
Q  321 cctatacgatttcctttc 338  Q
    || |||||||||||||||    
T  7615794 cccatacgatttcctttc 7615777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 17 - 363
Target Start/End: Complemental strand, 7607102 - 7606756
Alignment:
Q  17 agcagagaatacttgtgttgcagacatcctagaacccacctacgtacctccaattgttgatttattatttgcttt-atccgaagtaagaagctatgaagg 115  Q
    ||||||||||| | ||||||| |||||||| |||||   ||||||||||| |||||| |||| ||| ||||| || ||| ||  ||| || |||||||||    
T  7607102 agcagagaatattcgtgttgctgacatcctggaaccggtctacgtacctctaattgtcgattcattttttgccttcatcggagataaaaa-ctatgaagg 7607004  T
Q  116 cacatcaaaaccattgttggcagttcaagtaacggagctagttgacggtattttcattggttgctcatttaaccatgttgtcgttgacggaaagtccgtg 215  Q
    ||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  7607003 cacgtcaaaaccattgttggctgttcaaataacggagctagttgacggtattttcattggttgctccttcaaccatgttgtcgttgacggaaagtccgtg 7606904  T
Q  216 tggcatttcatcaattcctgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttc 315  Q
    ||||||||||||||||| ||||||||||| |||||  ||||||||  | |||||||||| |||||||||||||||||||||||||||||||||||| |||    
T  7606903 tggcatttcatcaattcatgggctgaaatatcacgcggttgttgtggtgatcaaatatccaaacccccaacactagagcgttggtttccaaatggtattc 7606804  T
Q  316 tacggcctatacgatttcctttcactttggagcaacaaaatgatcact 363  Q
     ||  || ||||||||||||||||||  ||||||||||||| ||||||    
T  7606803 aacttcccatacgatttcctttcactacggagcaacaaaataatcact 7606756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 21 - 347
Target Start/End: Complemental strand, 7629483 - 7629157
Alignment:
Q  21 gagaatacttgtgttgcagacatcctagaacccacctacgtacctccaattgttgatttattatttgc-tttatccgaagtaagaagctatgaaggcaca 119  Q
    ||||||||||||||||| ||||||||||||||   ||||||||||| |||||| |||| | ||||||| |||||  ||  ||| |||||| ||||||||     
T  7629483 gagaatacttgtgttgctgacatcctagaaccggtctacgtacctcaaattgtcgattcactatttgcctttataggagataa-aagctacgaaggcacg 7629385  T
Q  120 tcaaaaccattgttggcagttcaagtaacggagctagttgacggtattttcattggttgctcatttaaccatgttgtcgttgacggaaagtccgtgtggc 219  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| | || ||||||||| |||| ||||||||||| ||||||||||||||||||||||    
T  7629384 tcaaaaccattgttggctgttcaagtaacggagctagttgacggtgtctttattggttgcacattcaaccatgttgttgttgacggaaagtccgtgtggc 7629285  T
Q  220 atttcatcaattcctgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttctacg 319  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||   || |||||||||||||||||| ||| ||     
T  7629284 atttcatcaattcatgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacctccaacatctgaacgttggtttccaaatggtattcaact 7629185  T
Q  320 gcctatacgatttcctttcactttggag 347  Q
     || |||||||||||||||  |||||||    
T  7629184 tcccatacgatttcctttctttttggag 7629157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 25 - 366
Target Start/End: Original strand, 7655401 - 7655739
Alignment:
Q  25 atacttgtgttgcagacatcctagaacccacctacgtacctccaattgttgatttattatttgctttatccgaagtaagaagctatgaaggcacatcaaa 124  Q
    ||||||||||||| ||||||||| ||||||| || || ||| |  |||||  || ||| ||| ||||    || || |||| ||| ||||||||||||||    
T  7655401 atacttgtgttgctgacatcctaaaacccacatatgttccttcggttgttcgttcattttttcctttcaatgacgttagaaactacgaaggcacatcaaa 7655500  T
Q  125 accattgttggcagttcaagtaacggagctagttgacggtattttcattggttgctcattt-aaccatgttgtcgttgacggaaagtccgtgtggcattt 223  Q
    |||||||||||| |||||||| ||||||||||||||||| || |||||||| |  | |||| |||||||| || | ||||||| |||||  |||||||||    
T  7655501 accattgttggctgttcaagtcacggagctagttgacggcatcttcattggctt-taatttcaaccatgtcgtagctgacggacagtccacgtggcattt 7655599  T
Q  224 catcaattcctgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttctacggcct 323  Q
    ||||||||| ||||||||||| |||||| ||||   ||||||||||||||||||  ||||||| || ||||||||||||||||||||  ||| ||| |||    
T  7655600 catcaattcgtgggctgaaatgtcacgtggttg---tcatcatcaaatatctaactccccaacgctggagcgttggtttccaaatggaattcaacgacct 7655696  T
Q  324 atacgatttcctttcactttggagcaacaaaatgatcactctg 366  Q
    |||||||||||||| ||| | |||| ||||||  |||||||||    
T  7655697 atacgatttcctttaactatagagccacaaaagaatcactctg 7655739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 97 - 244
Target Start/End: Complemental strand, 39098453 - 39098306
Alignment:
Q  97 aagtaagaagctatgaaggcacatcaaaaccattgttggcagttcaagtaacggagctagttgacggtattttcattggttgctcatttaaccatgttgt 196  Q
    |||||| || ||| ||||||||||||||||||||| | ||||||||||| || ||||| ||||| |||||||||||||| | |||| | || ||||||||    
T  39098453 aagtaaaaaactacgaaggcacatcaaaaccattgcttgcagttcaagttactgagcttgttgatggtattttcattggcttctcaatcaatcatgttgt 39098354  T
Q  197 cgttgacggaaagtccgtgtggcatttcatcaattcctgggctgaaat 244  Q
     || || || |||||  | ||||||||||||||||| ||| |||||||    
T  39098353 tgtcgatggtaagtcgttttggcatttcatcaattcatggtctgaaat 39098306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 112 - 249
Target Start/End: Complemental strand, 39076010 - 39075873
Alignment:
Q  112 aaggcacatcaaaaccattgttggcagttcaagtaacggagctagttgacggtattttcattggttgctcatttaaccatgttgtcgttgacggaaagtc 211  Q
    ||||||||||| |||||||  | ||||| |||||||| ||| || | || ||||| ||||||||||   || |||||||||| |  || ||||  |||||    
T  39076010 aaggcacatcacaaccattacttgcagtacaagtaacagagttaatcgatggtatcttcattggttttgcaattaaccatgtgggtgtagacgccaagtc 39075911  T
Q  212 cgtgtggcatttcatcaattcctgggctgaaatctcac 249  Q
      | |||||||||||||| || ||||||||||||||||    
T  39075910 attttggcatttcatcaactcttgggctgaaatctcac 39075873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 248; Significance: 1e-137; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 19 - 366
Target Start/End: Original strand, 8935356 - 8935703
Alignment:
Q  19 cagagaatacttgtgttgcagacatcctagaacccacctacgtacctccaattgttgatttattatttgctttatccgaagtaagaagctatgaaggcac 118  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||| ||| ||||||||| |||| || |||||||| ||||||||    
T  8935356 cagagaatacttgtgttgctgacattctagaacccacctacgtaccaccaattgttgattcattttttgctttaaccgatgttagaagctacgaaggcac 8935455  T
Q  119 atcaaaaccattgttggcagttcaagtaacggagctagttgacggtattttcattggttgctcatttaaccatgttgtcgttgacggaaagtccgtgtgg 218  Q
    |||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||| | |||| ||||||||||||| ||||||    
T  8935456 atcaaaaccattgttggcagttcaagtaactgagttaattgacggtattttcattggttgctcatttaaccacgctgtcattgacggaaagtctgtgtgg 8935555  T
Q  219 catttcatcaattcctgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttctac 318  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||  ||||||||| ||    
T  8935556 catttcatcaattcttgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacctccaacactagaacgttggtttccggatggtgttcaac 8935655  T
Q  319 ggcctatacgatttcctttcactttggagcaacaaaatgatcactctg 366  Q
    |||| ||||||||||||||||||||||||||||||||  |||||||||    
T  8935656 ggccaatacgatttcctttcactttggagcaacaaaagaatcactctg 8935703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 123 - 366
Target Start/End: Original strand, 8910525 - 8910764
Alignment:
Q  123 aaaccattgttggcagttcaagtaacggagctagttgacggtattttcattggttgctcatttaaccatgttgtcgttgacggaaagtccgtgtggcatt 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8910525 aaaccattgttggcagttcaagtaacggagctagttgacggtattttcattggttgctcatttaaccatgttgtcgttgacggaaagtccgtgtggcatt 8910624  T
Q  223 tcatcaattcctgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttctacggcc 322  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    |||| ||||||    
T  8910625 tcattaattcctgggctgaaatctcacgtagttgttgtcattatcaaatatctaaacccccaacactagagcgttggtttccaaa----gttcaacggcc 8910720  T
Q  323 tatacgatttcctttcactttggagcaacaaaatgatcactctg 366  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  8910721 tatacgatttcctttcactttggagcaacaaaaggatcactctg 8910764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 279
Target Start/End: Original strand, 8934415 - 8934675
Alignment:
Q  19 cagagaatacttgtgttgcagacatcctagaacccacctacgtacctccaattgttgatttattatttgctttatccgaagtaagaagctatgaaggcac 118  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||| ||||||||| |||  || |||||||| ||||||||    
T  8934415 cagagaatacttgtgttgctgacattctagaacccacctacgtacctccaattgttgattcattttttgctttaaccggtgttagaagctacgaaggcac 8934514  T
Q  119 atcaaaaccattgttggcagttcaagtaacggagctagttgacggtattttcattggttgctcatttaaccatgttgtcgttgacggaaagtccgtgtgg 218  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| | |||| ||||||||||||| ||||||    
T  8934515 atcaaaaccattgttggcagttcaagtaacggagttaattgacggtattttcattggttgctcatttaaccacgctgtcattgacggaaagtctgtgtgg 8934614  T
Q  219 catttcatcaattcctgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaac 279  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  8934615 catttcatcaattcatgggctgaaatctcacgtagttgttgtcatcatcaaatatttaaac 8934675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 19 - 270
Target Start/End: Original strand, 8929960 - 8930211
Alignment:
Q  19 cagagaatacttgtgttgcagacatcctagaacccacctacgtacctccaattgttgatttattatttgctttatccgaagtaagaagctatgaaggcac 118  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||| ||||||||| |||  || |||||||| |||| |||    
T  8929960 cagagaatacttgtgttgctgacattctagaacccacctacgtacctccaattgttgattcattttttgctttaaccggtgttagaagctacgaagtcac 8930059  T
Q  119 atcaaaaccattgttggcagttcaagtaacggagctagttgacggtattttcattggttgctcatttaaccatgttgtcgttgacggaaagtccgtgtgg 218  Q
    ||||||||||||||||||| |||||||||| ||| || |||||||||||||||||||||||||||||||||| | |||| |||| |||||||| |||||     
T  8930060 atcaaaaccattgttggcatttcaagtaactgagttaattgacggtattttcattggttgctcatttaaccacgctgtcattgatggaaagtctgtgtga 8930159  T
Q  219 catttcatcaattcctgggctgaaatctcacgtagttgttgtcatcatcaaa 270  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  8930160 catttcatcaattcatgggctgaaatctcacgtagttgttgtcatcatcaaa 8930211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 111 - 341
Target Start/End: Complemental strand, 8103248 - 8103018
Alignment:
Q  111 gaaggcacatcaaaaccattgttggcagttcaagtaacggagctagttgacggtattttcattggttgctcatttaaccatgttgtcgttgacggaaagt 210  Q
    |||||||||||| |||||||||| || || ||||| || ||| |||||||||| || || |||||||   | ||||||||||| || ||||| ||||  |    
T  8103248 gaaggcacatcacaaccattgtttgccgtgcaagtgacagagttagttgacggcatctttattggttttacttttaaccatgtggttgttgatggaactt 8103149  T
Q  211 ccgtgtggcatttcatcaattcctgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatgg 310  Q
    | |  ||| ||||||| ||||| |||||||||||||||||| || |||||    |||||| ||| |||| | ||||||| || |||||||||||| ||||    
T  8103148 cggcatggtatttcattaattcgtgggctgaaatctcacgtggtggttgttgcaatcaaacatccaaactctcaacacttgaacgttggtttccagatgg 8103049  T
Q  311 tgttctacggcctatacgatttcctttcact 341  Q
    | ||| | | || ||||||||||| ||||||    
T  8103048 tattcaatgtcccatacgatttcccttcact 8103018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 111 - 355
Target Start/End: Original strand, 40146736 - 40146977
Alignment:
Q  111 gaaggcacatcaaaaccattgttggcagttcaagtaacggagctagttgacggtattttcattggttgctcatttaaccatgttgtcgttgacggaaagt 210  Q
    |||||||||||| |||||||||| || || ||||| || ||| ||||||||||  | ||||||||||   ||||||||||||  || ||||||||| |||    
T  40146736 gaaggcacatcacaaccattgttagctgtgcaagtgacagagttagttgacggcttcttcattggttttacatttaaccatgcggttgttgacggagagt 40146835  T
Q  211 ccgtgtggcatttcatcaattcctgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatgg 310  Q
    ||   |||| |||||| ||||| |||||  ||||||| ||| ||||||| ||  ||||| |||| |||| |  ||| ||||| ||||||||||||| |||    
T  40146836 ccacatggcttttcattaattcatgggcgaaaatctcgcgtggttgttg-ca--atcaagtatccaaactcataacgctagaacgttggtttccaagtgg 40146932  T
Q  311 tgttctacggcctatacgatttcctttcactttggagcaacaaaa 355  Q
    | ||| ||  || |||||||||||||| ||| | |||| ||||||    
T  40146933 tattcaacatcccatacgatttccttttactatagagccacaaaa 40146977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 102 - 365
Target Start/End: Complemental strand, 6501288 - 6501029
Alignment:
Q  102 agaagctatgaaggcacatcaaaaccattgttggcagttcaagtaacggagctagttgacggtattttcattggttgctcatttaaccatgttgtcgttg 201  Q
    |||| ||| ||||||| ||||||||||||| | ||||| ||||| || ||| |||||| |||| | || ||||| |    ||| |||||||| |||  ||    
T  6501288 agaaactacgaaggcatatcaaaaccattgcttgcagtgcaagtgacagagttagttggcggtgtctttattgggtttagattcaaccatgtggtcactg 6501189  T
Q  202 acggaaagtccgtgtggcatttcatcaattcctgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtt 301  Q
      ||||||||| |||||||||| |||| ||||||||||||||| |||||| |||||||   | |||||||||| |||| |||| ||||||| |||| |||    
T  6501188 gtggaaagtccatgtggcattttatcagttcctgggctgaaatttcacgtggttgttg---taatcaaatatccaaactcccatcactagaacgtt-gtt 6501093  T
Q  302 tccaaatggtgttctacggcctatacgatttcctttcactttggagcaacaaaatgatcactct 365  Q
    |||||||| | |||  ||  | ||||||||||||| |||  ||||||  |||||| ||||||||    
T  6501092 tccaaatgatattcagcgttccatacgatttccttccacaatggagcctcaaaataatcactct 6501029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 337
Target Start/End: Original strand, 15190642 - 15190757
Alignment:
Q  219 catttcatcaattcctgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttctac 318  Q
    ||||||||||||||   |||||||||||||||| ||| ||| ||||   ||||||||  ||| |||||||| || ||||  |||||||||||  ||| ||    
T  15190642 catttcatcaattcactggctgaaatctcacgtggttcttgccatc---aaatatctgtacctccaacacttgaacgtttatttccaaatggaattcaac 15190738  T
Q  319 ggcctatacgatttccttt 337  Q
    | || ||||||||||||||    
T  15190739 gtcccatacgatttccttt 15190757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 34174889 - 34174825
Alignment:
Q  112 aaggcacatcaaaaccattgttggcagttcaagtaacggagctagttgacggtattttcattggt 176  Q
    |||| |||||| |||||||| | |||||||||||||| ||| || |||| ||||| |||||||||    
T  34174889 aaggtacatcacaaccattgcttgcagttcaagtaacagagttaattgatggtatcttcattggt 34174825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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