View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16794_low_5 (Length: 381)
Name: NF16794_low_5
Description: NF16794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16794_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 36 - 372
Target Start/End: Original strand, 11900522 - 11900859
Alignment:
| Q |
36 |
gttattgggaaaaaggtttgtttttaatgaattaggatacatgagatgttggtgtgcaaaggctaatttgatatagtcatttaggaggagagagttcata |
135 |
Q |
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| T |
11900522 |
gttattgggaaaaaggtttgtatttaatgaattaggatacatgagatgttggtgtgcaaaggctaatttgacatagtcatttgggaggagagagttcata |
11900621 |
T |
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| Q |
136 |
ctttgaaggatttgggagagcaattgattctctcataactcctctaactatattttgtttagtccattcaattca--tttattgttatttttcctttaaa |
233 |
Q |
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| T |
11900622 |
cttttaaggatttgggagagcaattgattctctcatacctcctctaactatattttgtttagtccattcaattcattttttttgttattttttctttaaa |
11900721 |
T |
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| Q |
234 |
tcatgagtttgtttttatgcaactgaatctaatgcatgtagtgtcctagggcaaatgaatcttatgcatgtccttaagattagagattggttctaccatg |
333 |
Q |
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| T |
11900722 |
tcatgagtttg-ttttatgcaactgaatctaatgcatgtagtgtcctagggcaaatgaatcttatgcatgtccttaagattagagattggttctaccatg |
11900820 |
T |
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| Q |
334 |
taatttaatgatttactcacttttttgtgaaattcatct |
372 |
Q |
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| T |
11900821 |
taatttaatgatttactcacttttttgtgaaattcatct |
11900859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 12 - 244
Target Start/End: Complemental strand, 55817450 - 55817216
Alignment:
| Q |
12 |
ttcatctttgttttttaatttagtgttattgggaaaaaggtttgtttttaatgaattaggatacatgagatgttggtgtgcaaaggctaatttgatatag |
111 |
Q |
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| T |
55817450 |
ttcatctttgttttttaatttagtgttattggaaaaaaggtttgtatctaatgaattaggatacatgagatgttggtgtgcaaaggctaatttgacacag |
55817351 |
T |
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| Q |
112 |
tcatttaggaggagagagttcatactttgaaggatttgggagagcaattgattctctcataactcctctaactatattttgtttagtccattcaattcat |
211 |
Q |
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|||||| |||||||||||||||| | || |||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||| |
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| T |
55817350 |
tcatttgggaggagagagttcattcctttaaggatttgggagagcaattgattctctcatacctcctctaattattttttgtttagtccattcaattcat |
55817251 |
T |
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| Q |
212 |
tta--ttgttatttttcctttaaatcatgagtttg |
244 |
Q |
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| T |
55817250 |
ttattttgttatttttcctttaaatcatgagtttg |
55817216 |
T |
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