View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16794_low_6 (Length: 322)
Name: NF16794_low_6
Description: NF16794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16794_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 9e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 104 - 303
Target Start/End: Original strand, 31844406 - 31844608
Alignment:
| Q |
104 |
taaattagggttagtagtagtgatagtagggttattaaggttaagattaagcatagaagaaccttgaat---ttgagctggttcatgagttgttggtggt |
200 |
Q |
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| T |
31844406 |
taaattagggttagtagtagtgatagtagggttattaaggttaagattaagcatagaagaaccttcattaagttgagctggttcatgagttgttggtggt |
31844505 |
T |
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| Q |
201 |
gatgattgtctaagccttgctctatcccttctatgaacattcatgtgacctccaagtgcttgagctgatttaaactcttttctacaaaagctacatgtgt |
300 |
Q |
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| T |
31844506 |
gatgattgtctaagccttgctctatcccttctatgaacattcatgtgacctccaagtgcttgagctgatttaaactcttttctacaaaagctacatgtgt |
31844605 |
T |
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| Q |
301 |
atg |
303 |
Q |
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||| |
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| T |
31844606 |
atg |
31844608 |
T |
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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 213 - 297
Target Start/End: Complemental strand, 34522688 - 34522604
Alignment:
| Q |
213 |
agccttgctctatcccttctatgaacattcatgtgacctccaagtgcttgagctgatttaaactcttttctacaaaagctacatg |
297 |
Q |
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| T |
34522688 |
agcctagctctatctctcctatgaatattcatgtgaccaccaagagcttgagcagacctaaactctcttttacaaaagttacatg |
34522604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 295
Target Start/End: Original strand, 6889821 - 6889900
Alignment:
| Q |
216 |
cttgctctatcccttctatgaacattcatgtgacctccaagtgcttgagctgatttaaactcttttctacaaaagctaca |
295 |
Q |
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| T |
6889821 |
cttgctctatcttttctatgaacattcatatgtccacctaatgcttgtgctgacctaaactctcttctacaaaagctaca |
6889900 |
T |
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