View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16794_low_8 (Length: 312)
Name: NF16794_low_8
Description: NF16794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16794_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 15 - 200
Target Start/End: Complemental strand, 18601690 - 18601507
Alignment:
| Q |
15 |
taatactaactttgtattaggttttcatcgttggttgtcgtgccccttgtatgtttgaacatcaattagttcgcnnnnnnnnnnnnn-attgtgtgagaa |
113 |
Q |
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| T |
18601690 |
taatactaactttgtactaggtgttcatcgttggttgtcgtgccccttgtatgtttgaacatcacttagttcgcttttttttgtttttattgtgcgatga |
18601591 |
T |
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| Q |
114 |
ttttggtgtaaactttagttgttttctttaccacatcttatgataaagaaacttctacttctggtgccaatataatttcatttctgc |
200 |
Q |
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| T |
18601590 |
ttttggtgtaaactttagttgttttctttagcacatcttatgatagagaaactt---cttctcgtgccaatataatttcatttctgc |
18601507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 296
Target Start/End: Complemental strand, 18601441 - 18601411
Alignment:
| Q |
266 |
aagaatgatacatgtgtttgttaaaatatat |
296 |
Q |
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| T |
18601441 |
aagaatgatacatgtgtttgttaaaatatat |
18601411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 196
Target Start/End: Original strand, 7306900 - 7306994
Alignment:
| Q |
102 |
attgtgtgagaattttggtgtaaactttagttgttttctttaccacatcttatgataaagaaacttctacttctggtgccaatataatttcattt |
196 |
Q |
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| T |
7306900 |
attgtgtgaggactttgttgtaaactttagttgttttctttggcacatcttgtgttagagaaacttctacttttaatgttaatataatttcattt |
7306994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 189
Target Start/End: Original strand, 27946034 - 27946108
Alignment:
| Q |
115 |
tttggtgtaaactttagttgttttctttaccacatcttatgataaagaaacttctacttctggtgccaatataat |
189 |
Q |
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| T |
27946034 |
tttgttgtaaactttagttgttttctttggcacatcttgtgctagagaagcttctacttcttgtgttaatataat |
27946108 |
T |
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