View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16795_high_1 (Length: 496)
Name: NF16795_high_1
Description: NF16795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16795_high_1 |
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| [»] scaffold0031 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 17 - 374
Target Start/End: Original strand, 47648995 - 47649352
Alignment:
| Q |
17 |
caaaggcgtgcaaacgctaacacagccacaccaattgcatatattattaaccaattgcaccataacagtaatcactaccacaccaaaatcaacatcacag |
116 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47648995 |
caaaggcgtgcaaacgcttacacagccacaccaattgcatatattattaaccaattgcaccataacagtaatcactaccacaccaaaatcaacatcacag |
47649094 |
T |
|
| Q |
117 |
taaagcacaaaaacgaattgctaaaacaaattctcaatcataatatcctcacaaatgcatcaagtcgtgtctccacgaatccatctcaactcgaaataaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47649095 |
taaagcacaaaaacgaattgctaaaacaaattctcaatcataatatcctcacaaatgcatcaagtcgtgtctccacgaatccatctcaactcgaaataaa |
47649194 |
T |
|
| Q |
217 |
atttggacaaaattgtatgctaaatgtcaagaaaaattacttacaatttctctgaagtggtgttattatccttgtgagcaagctcggacattatattaag |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
47649195 |
atttggacaaaattgtatgctaaatgtcaagaaaaattacttacaatttctctgaagtggtgttattatccttgtgagcacgctcggacattatattaag |
47649294 |
T |
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| Q |
317 |
tgcactacaaaattgtccaccgataccctatagaaatattcaaaataacacccatgac |
374 |
Q |
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| T |
47649295 |
tgcactacaaaattgtccaccgataccctatagaaatattcaaaataacgcccatgac |
47649352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 446 - 481
Target Start/End: Original strand, 47649424 - 47649459
Alignment:
| Q |
446 |
accaactatggtcatttatatacttacttagaaatt |
481 |
Q |
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| T |
47649424 |
accaactatggtcatttatatacttacttagaaatt |
47649459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 130; Significance: 4e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 66 - 318
Target Start/End: Original strand, 30753152 - 30753404
Alignment:
| Q |
66 |
accaattgcaccataacagtaatcactaccacaccaaaatcaacatcacagtaaa-gcacaaaaacgaattgctaaaacaaattctcaatcataatatcc |
164 |
Q |
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|||||||||||||||||| ||| || |||||||||||||||||||||| |||||| ||||| |||| ||| || |||||||||||||||| | ||||||| |
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| T |
30753152 |
accaattgcaccataacactaaacattaccacaccaaaatcaacatcaaagtaaaagcacacaaactaat-gcaaaaacaaattctcaattagaatatcc |
30753250 |
T |
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| Q |
165 |
tcacaaatgcatcaagtcgtgtctccacgaatccatctcaactcgaaataaaatttggacaaaattgtatgctaaatgtcaagaaaaattacttacaatt |
264 |
Q |
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| T |
30753251 |
tcacaaacgcagcaagtcgtttctccatcaagccatctcaattcaaaataaaatttagacaaaattgtattctaaaagtcaagaaaaattacttccaatt |
30753350 |
T |
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| Q |
265 |
tctctgaagtggtgttattatccttgtgagcaagctcggacattatattaagtg |
318 |
Q |
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| T |
30753351 |
tctctgaagtcgtgttattatccttatgaacaagttcagacattatcttaagtg |
30753404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 242 - 374
Target Start/End: Original strand, 91410 - 91540
Alignment:
| Q |
242 |
gtcaagaaaaattacttacaatttctctgaagtggtgttattatccttgtgagcaagctcggacattatattaagtgcactacaaaattgtccaccgata |
341 |
Q |
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||||||||||||| |||||||||||| | ||| ||||||||||||||||| |||| || |||||||||||||||||||| ||||||||||||||||| |
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| T |
91410 |
gtcaagaaaaattgcttacaatttct--ggagtcatgttattatccttgtgaacaagttcatacattatattaagtgcactagaaaattgtccaccgata |
91507 |
T |
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| Q |
342 |
ccctatagaaatattcaaaataacacccatgac |
374 |
Q |
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| T |
91508 |
ccctataaaaatattcaaaataacacccatgac |
91540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 222
Target Start/End: Complemental strand, 36518223 - 36518168
Alignment:
| Q |
167 |
acaaatgcatcaagtcgtgtctccacgaatccatctcaactcgaaataaaatttgg |
222 |
Q |
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|||||||||| || | ||||||||| ||||||||||||||| ||||||||||||| |
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| T |
36518223 |
acaaatgcattaaaccatgtctccaccaatccatctcaactccaaataaaatttgg |
36518168 |
T |
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