View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16795_high_11 (Length: 227)
Name: NF16795_high_11
Description: NF16795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16795_high_11 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 32644900 - 32645123
Alignment:
| Q |
1 |
cgatgatcatgcaaagaggattaaaagctgttgcaaaaactgggcctctcatttgcatcaccagcccttgaacatagtatgcaattcctgaactaactat |
100 |
Q |
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| T |
32644900 |
cgatgatcatgcaaagaggattaaaagctgttgcaaaaactgggcctctcatttgcatcaccagcccttgaacatagtatgcaattcctgaactaactat |
32644999 |
T |
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| Q |
101 |
tccctatataataaattaagaaactgattaagaaaattatttgaannnnnnnctaactaagcttgtgaatgagaaactaattaacggattaacaaaccgt |
200 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32645000 |
tccctat---ataaattaagaaactgattaagaaaattatttgaatttttttctaactaagcttgtgaatgagaaactaattaacggattaacaaaccgt |
32645096 |
T |
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| Q |
201 |
gtaaagaggagcatagagcctataatc |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
32645097 |
gtaaagaggagcatagagcctataatc |
32645123 |
T |
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