View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16795_high_12 (Length: 209)
Name: NF16795_high_12
Description: NF16795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16795_high_12 |
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| [»] scaffold0417 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 27254410 - 27254601
Alignment:
| Q |
1 |
agaagtcaataccatagtcccaaatggtaaagcaaccccattcttcgtaacaacatcatagaaacgctttctaggaatagcctgaaatattacagaattt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27254410 |
agaagtcaataccatagtcccaaatggtaaagcaaccccattcttcgtaacaacatcatagaaacgctttctaggaatagcctgaaatattacagaattt |
27254509 |
T |
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| Q |
101 |
gacataacctcagcacattagaatataaataataaaatttctaaactacacaatgaataaatagagtattgggaactcacacgacatctgtg |
192 |
Q |
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| T |
27254510 |
gacataacctcagcacattagaatataaataataaaatttctaaactacacaatgaataaatagagtattgggaactcacacgacatctgtg |
27254601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 27294533 - 27294647
Alignment:
| Q |
1 |
agaagtcaataccatagtcccaaatggtaaagcaaccccattcttcgtaacaacatcatagaaacgctttctaggaatagcctgaaatattacagaattt |
100 |
Q |
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|||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
27294533 |
agaagtcaatgccatgctcccaaatggtacagcaaccccattcttcgtaacaacatcatagaaacgctttctaggaatagcctga---attacagaaatt |
27294629 |
T |
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| Q |
101 |
gacataacctcagcacat |
118 |
Q |
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| T |
27294630 |
gacataacctcagaacat |
27294647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 27425934 - 27425868
Alignment:
| Q |
21 |
caaatggtaaagcaaccccattcttcgtaacaacatcatagaaacgctttctaggaatagcctgaaa |
87 |
Q |
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| T |
27425934 |
caaatgctaaaccaaccccgttcttcgaaacaacatcattgaaacgctttctaggaacagcctgaaa |
27425868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0417 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: scaffold0417
Description:
Target: scaffold0417; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 12815 - 12901
Alignment:
| Q |
1 |
agaagtcaataccatagtcccaaatggtaaagcaaccccattcttcgtaacaacatcatagaaacgctttctaggaatagcctgaaa |
87 |
Q |
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|||||||| ||||||| || |||||| |||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
12815 |
agaagtcattaccatactcacaaatgctaaaccaacaccattcttagtaacaacatcatagaaacgctttctaggaatagcctgaaa |
12901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 13354409 - 13354343
Alignment:
| Q |
21 |
caaatggtaaagcaaccccattcttcgtaacaacatcatagaaacgctttctaggaatagcctgaaa |
87 |
Q |
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|||||| |||| ||| |||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
13354409 |
caaatgctaaaccaatcccattcttcttaacaacatcatagaaatgctttctaggaatagcctgaaa |
13354343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 6792368 - 6792298
Alignment:
| Q |
1 |
agaagtcaataccatagtcccaaatggtaaagcaaccccattcttcgtaacaacatcatagaaacgctttc |
71 |
Q |
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|||||||| ||||||| || || || |||||||||||||||||| |||||| ||||||| ||| |||||| |
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| T |
6792368 |
agaagtcattaccatattctcatctgctaaagcaaccccattctttgtaacatcatcataaaaatgctttc |
6792298 |
T |
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