View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16795_high_3 (Length: 393)

Name: NF16795_high_3
Description: NF16795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16795_high_3
NF16795_high_3
[»] chr8 (12 HSPs)
chr8 (18-381)||(2034342-2034705)
chr8 (18-107)||(2029698-2029787)
chr8 (18-133)||(2051805-2051920)
chr8 (18-86)||(2038715-2038783)
chr8 (18-98)||(2058901-2058981)
chr8 (18-86)||(2047958-2048026)
chr8 (18-90)||(2055705-2055777)
chr8 (18-93)||(1948246-1948321)
chr8 (19-64)||(10769388-10769433)
chr8 (19-62)||(2023297-2023340)
chr8 (279-312)||(2058618-2058651)
chr8 (279-319)||(2051147-2051187)
[»] chr1 (1 HSPs)
chr1 (288-355)||(17183007-17183074)
[»] chr2 (3 HSPs)
chr2 (18-61)||(28742185-28742228)
chr2 (18-61)||(28699552-28699595)
chr2 (18-61)||(28735052-28735095)
[»] chr4 (1 HSPs)
chr4 (18-61)||(48905026-48905069)


Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 18 - 381
Target Start/End: Complemental strand, 2034705 - 2034342
Alignment:
Q  18 tactctgtgttcaacactcttgaatctgtcatttgttataagctacaattgaagcaaacaaataattagttatatgcttacgtcatctattgatacttcc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||     
T  2034705 tactctgtgttcaacactcttgaatctgtcatttgttataagctacaattgaagcaaacaaataattagttatatgcttacgttatctattgatacttct 2034606  T
Q  118 aactaaaatcttaaaatccaaaccagagattaaagacatcaattcctatcagtttgagggatatagcttacttggaactagtcaaatagtaaagtaagca 217  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2034605 aactaaaatcttaaaatccaaaccagagattaaagacaccaattcctatcagtttgagggatatagcttacttggaactagtcaaatagtaaagtaagca 2034506  T
Q  218 ataataaaaggcacgcaatacataacacctcaaataagatggattatggaatataacgccggctatatgcttgaaaccaagttgaaaatgcaagagattt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2034505 ataataaaaggcacgcaatacataacacctcaaataagatggattatggaatataacgccggctatatgcttgaaaccaagttgaaaatgcaagagattt 2034406  T
Q  318 gataaactagtctaactctaaatatacatcaaatggcttaatgtgttctattttattacctttg 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2034405 gataaactagtctaactctaaatatacatcaaatggcttaatgtgttctattttattacctttg 2034342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 2029787 - 2029698
Alignment:
Q  18 tactctgtgttcaacactcttgaatctgtcatttgttataagctacaattgaagcaaacaaataattagttatatgcttacgtcatctat 107  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||   || ||||||||||||||||||||||||||| || |||||    
T  2029787 tactctatgttcaacactcttgaatctatcatttgttataagctacaaggtaaacaaacaaataattagttatatgcttacatcttctat 2029698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 2051920 - 2051805
Alignment:
Q  18 tactctgtgttcaacactcttgaatctgtcatttgttataagctacaattgaagcaaacaaataattagttatatgcttacgtcatctattgatacttcc 117  Q
    |||||| ||| |||||||||||||| |||||||||| ||||||||||||| || ||||||||||||||||| |||| |||| ||   ||| ||| |||||    
T  2051920 tactctatgtacaacactcttgaatttgtcatttgtaataagctacaattcaaacaaacaaataattagttgtatgtttacatctattatcgatccttcc 2051821  T
Q  118 aactaaaatcttaaaa 133  Q
    || ||| |||||||||    
T  2051820 aattaatatcttaaaa 2051805  T

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Target: chr8; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 2038783 - 2038715
Alignment:
Q  18 tactctgtgttcaacactcttgaatctgtcatttgttataagctacaattgaagcaaacaaataattag 86  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||   || ||||| |||||||||    
T  2038783 tactctgtgttcaacactcttgaatctgtcatttgttataagctacaaggtaaacaaactaataattag 2038715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 2058981 - 2058901
Alignment:
Q  18 tactctgtgttcaacactcttgaatctgtcatttgttataagctacaattgaagcaaacaaataattagttatatgcttac 98  Q
    |||||| ||| |||||||||||||| |||||||||||||||||||||||| || ||| ||||||||||| |||||| ||||    
T  2058981 tactctatgtacaacactcttgaatttgtcatttgttataagctacaattcaaacaatcaaataattagatatatgtttac 2058901  T

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Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 2048026 - 2047958
Alignment:
Q  18 tactctgtgttcaacactcttgaatctgtcatttgttataagctacaattgaagcaaacaaataattag 86  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||   || |||||||||||||||    
T  2048026 tactttgtgttcaaaactcttgaatctgtcatttgttataagctacaagataaacaaacaaataattag 2047958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 2055777 - 2055705
Alignment:
Q  18 tactctgtgttcaacactcttgaatctgtcatttgttataagctacaattgaagcaaacaaataattagttat 90  Q
    |||||| ||| |||||||||||||| ||||||||||||||||||||| || || |||||||| ||||||||||    
T  2055777 tactctatgtacaacactcttgaatttgtcatttgttataagctacagttcaaacaaacaaagaattagttat 2055705  T

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Target: chr8; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 1948246 - 1948321
Alignment:
Q  18 tactctgtgttcaacactcttgaatctgtcatttgttataagctacaattgaagcaaacaaataattagttatatg 93  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||| | || |||  |||||||||| ||||||    
T  1948246 tactctatgttcaacactcttgaatttgtcatttgttataagctacaaatcaaacaagaaaataattagctatatg 1948321  T

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Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 10769433 - 10769388
Alignment:
Q  19 actctgtgttcaacactcttgaatctgtcatttgttataagctaca 64  Q
    |||||||| || |||||||||||| |||||||||||||||||||||    
T  10769433 actctgtgctccacactcttgaatttgtcatttgttataagctaca 10769388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 2023340 - 2023297
Alignment:
Q  19 actctgtgttcaacactcttgaatctgtcatttgttataagcta 62  Q
    |||||||| ||||||||||||||| |||||||||| ||||||||    
T  2023340 actctgtgctcaacactcttgaatttgtcatttgtaataagcta 2023297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 312
Target Start/End: Complemental strand, 2058651 - 2058618
Alignment:
Q  279 gctatatgcttgaaaccaagttgaaaatgcaaga 312  Q
    |||||||||||||||||||||| |||||||||||    
T  2058651 gctatatgcttgaaaccaagttaaaaatgcaaga 2058618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 319
Target Start/End: Complemental strand, 2051187 - 2051147
Alignment:
Q  279 gctatatgcttgaaaccaagttgaaaatgcaagagatttga 319  Q
    |||||||||||||| |||||||||||||||| |||| ||||    
T  2051187 gctatatgcttgaagccaagttgaaaatgcaggagacttga 2051147  T

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Target: chr1 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 288 - 355
Target Start/End: Original strand, 17183007 - 17183074
Alignment:
Q  288 ttgaaaccaagttgaaaatgcaagagatttgataaactagtctaactctaaatatacatcaaatggct 355  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  17183007 ttgaaaccaagttgaaaatgcaagagatttgattaactagtctaactctaaatatacatcaaatggct 17183074  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 28742185 - 28742228
Alignment:
Q  18 tactctgtgttcaacactcttgaatctgtcatttgttataagct 61  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  28742185 tactctgtgctcaacactcttgaatctgtcatttgttataagct 28742228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 28699552 - 28699595
Alignment:
Q  18 tactctgtgttcaacactcttgaatctgtcatttgttataagct 61  Q
    |||||| |||||||||||||||||| ||||||||||||| ||||    
T  28699552 tactctatgttcaacactcttgaatttgtcatttgttatcagct 28699595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 28735052 - 28735095
Alignment:
Q  18 tactctgtgttcaacactcttgaatctgtcatttgttataagct 61  Q
    |||||| |||||||||||||||||| | ||||||||||||||||    
T  28735052 tactctatgttcaacactcttgaatttatcatttgttataagct 28735095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 48905026 - 48905069
Alignment:
Q  18 tactctgtgttcaacactcttgaatctgtcatttgttataagct 61  Q
    ||||||||||||||||||||| ||  ||||||||||||||||||    
T  48905026 tactctgtgttcaacactcttaaacttgtcatttgttataagct 48905069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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