View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16795_high_4 (Length: 380)
Name: NF16795_high_4
Description: NF16795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16795_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 371
Target Start/End: Original strand, 30087012 - 30087365
Alignment:
| Q |
18 |
aaccttcactgtcactatgttaacattattatctgctatcaaatactaatccataaatctgacaaaccttnnnnnnntgaccaaaattaatgaatggttt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30087012 |
aaccttcactgtcactatgttaacattattatctgctatcaaatactaatccataaatctgacaaaccttaaaaaaatgaccaaaattaatgaatggttt |
30087111 |
T |
|
| Q |
118 |
ataactaacccaaccttattatatatcaaatcctatttacattaaccatatccttctttgtccttccaatcaattccttatcaaaatcaagagatatcga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30087112 |
ataactaacccaaccttattatatatcaaatcctatttacattaaccatatccttctttgtccttccaatcaattccttatcaaaatcaagagatatcga |
30087211 |
T |
|
| Q |
218 |
tatcactctctgtcagtgtcatgtctactccttacaacaccattgtccttccttcattagagagtgcaatggtagaaaactgagacactgatcaagcaga |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30087212 |
tatcactctctgtcagtgtcatgtctactccttacaacaccattgtccttccttcattagagagtgcaatggtagaaaactgagacactgatcaagcaga |
30087311 |
T |
|
| Q |
318 |
agaacaacaacaacaaaatgcagctcaaaactcagtctttcatcttcttcttct |
371 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30087312 |
agaagaacaacaacaaaatgcagctcaaaactcagtctttcatcttcttcttct |
30087365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University