View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16795_low_3 (Length: 419)
Name: NF16795_low_3
Description: NF16795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16795_low_3 |
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| [»] scaffold0341 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 19 - 374
Target Start/End: Complemental strand, 6517040 - 6516685
Alignment:
| Q |
19 |
atatggtctagctcaatgcacacctgatttgtctaaaacattttgtgatgattgtttggttcaatctatcaatgaaatcgcaatatgttgtaacaacagg |
118 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6517040 |
atatggtctagctcaatgcacacctgatttgtttaaaacattttgtgatgattgtttggttcaatctatcaatgaaatcgcaatatgttgtaacaacagg |
6516941 |
T |
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| Q |
119 |
atgggtgctagagttgttagacccagttgttatttgagatatgaaaccgattcactcttttatcaaccaacacaagattcaccttcgtcgttgtcaccat |
218 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6516940 |
atgagtgctagagttgttagacccagttgttatttgagatatgaaaccgattcactcttttatcaaccaacacaagattcaccttcgtcgttgtcaccat |
6516841 |
T |
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| Q |
219 |
caccgacgtcagtcccatcactcgcagctcctcctccatttgcaaataacactaactcctatccaggtcctcataaacttatcaatagacctatagaaag |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
6516840 |
caccgacgtcagtcccatcactcgcagctcctcctccatttgcaaataacactacctcctatccaggtcttcataaacttatcaatagacctatagaaag |
6516741 |
T |
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| Q |
319 |
ttttatttattaatttcatcttggccctcagcttattaaaatgaatcttggtgtta |
374 |
Q |
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| T |
6516740 |
ttttatttattaatttcatcttggtcctcaacttattaaaatgaatcttggtgtta |
6516685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 31 - 201
Target Start/End: Complemental strand, 6512629 - 6512459
Alignment:
| Q |
31 |
tcaatgcacacctgatttgtctaaaacattttgtgatgattgtttggttcaatctatcaatgaaatcgcaatatgttgtaacaacaggatgggtgctaga |
130 |
Q |
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| T |
6512629 |
tcaatgcacacctgatttgtctaaatcattgtgcgatgattgtttggtaaaatctatcaaagcaatcccaagatgttgtaacaacaggttgggtgctaga |
6512530 |
T |
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| Q |
131 |
gttgttagacccagttgttatttgagatatgaaaccgattcactcttttatcaaccaacacaagattcacc |
201 |
Q |
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| T |
6512529 |
attgttagaccaagttgttatttgagatatgaaaccgattcactcttctatcaacaaacaccagatccacc |
6512459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 6521995 - 6522165
Alignment:
| Q |
19 |
atatggtctagctcaatgcacacctgatttgtctaaaacattttgtgatgattgtttggttcaatctatcaatgaaatcgcaatatgttgtaacaacagg |
118 |
Q |
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||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||| ||||||||||| ||| |
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| T |
6521995 |
atatggtcttgttcaatgcacacctgatttgtctaaaacattatgtgatgattgtttggttcaatctatcaaagaaatttcaaattgttgtaacaatagg |
6522094 |
T |
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| Q |
119 |
atgggtgctagagttgttagacccagttgttatttgagatatgaaaccgattcactcttttatcaaccaac |
189 |
Q |
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| T |
6522095 |
ttaggtgctagaattgttagacccagttgtaatttgagatatgaaaccaattcattcttctatcaaccaac |
6522165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 31 - 222
Target Start/End: Complemental strand, 6506722 - 6506525
Alignment:
| Q |
31 |
tcaatgcacacctgatttgtctaaaacattttgtgatgattgtttggttcaatctatcaatgaaatcgcaatatgttgtaacaacaggatgggt------ |
124 |
Q |
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|||||||||||||||||||||| ||||||| |||||||| ||||||| | |||||||||| |||||| ||| |||||| |||| || || ||| |
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| T |
6506722 |
tcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaataggtataggt |
6506623 |
T |
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| Q |
125 |
gctagagttgttagacccagttgttatttgagatatgaaaccgattcactcttttatcaaccaacacaagattcaccttcgtcgttgtcaccatcacc |
222 |
Q |
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| T |
6506622 |
ggtagatttcttagacccagttgttatttgagatatgaaaccaattcacttttctatcaacaaactcaagattcaccttcatcatcgtcatcatcacc |
6506525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 370 - 419
Target Start/End: Complemental strand, 6516666 - 6516617
Alignment:
| Q |
370 |
tgttaaaaaataatttccgtgtcttagtatccttgatacattaaatttcc |
419 |
Q |
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| T |
6516666 |
tgttaaaaaataatttccgtgtcttagtatccttgatacattaaatttcc |
6516617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 31 - 222
Target Start/End: Complemental strand, 747 - 550
Alignment:
| Q |
31 |
tcaatgcacacctgatttgtctaaaacattttgtgatgattgtttggttcaatctatcaatgaaatcgcaatatgttgtaacaacaggatgggt------ |
124 |
Q |
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|||||||||||||||||||||| ||||||| |||||||| ||||||| | |||||||||| |||||| ||| |||||| |||| || || ||| |
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| T |
747 |
tcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaataggtataggt |
648 |
T |
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| Q |
125 |
gctagagttgttagacccagttgttatttgagatatgaaaccgattcactcttttatcaaccaacacaagattcaccttcgtcgttgtcaccatcacc |
222 |
Q |
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| T |
647 |
ggtagatttcttagacccagttgttatttgagatatgaaaccaattcacttttctatcaacaaactcaagattcaccttcatcatcgtcatcatcacc |
550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 31 - 222
Target Start/End: Complemental strand, 8400 - 8203
Alignment:
| Q |
31 |
tcaatgcacacctgatttgtctaaaacattttgtgatgattgtttggttcaatctatcaatgaaatcgcaatatgttgtaacaacaggatgggt------ |
124 |
Q |
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|||||||||||||||||||||| ||||||| |||||||| ||||||| | |||||||||| |||||| ||| |||||| |||| || || ||| |
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| T |
8400 |
tcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaataggtataggt |
8301 |
T |
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| Q |
125 |
gctagagttgttagacccagttgttatttgagatatgaaaccgattcactcttttatcaaccaacacaagattcaccttcgtcgttgtcaccatcacc |
222 |
Q |
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| T |
8300 |
ggtagatttcttagacccagttgttatttgagatatgaaaccaattcacttttctatcaacaaactcaagattcaccttcatcatcgtcatcatcacc |
8203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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