View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16795_low_7 (Length: 287)

Name: NF16795_low_7
Description: NF16795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16795_low_7
NF16795_low_7
[»] chr7 (31 HSPs)
chr7 (1-227)||(33238342-33238568)
chr7 (1-227)||(33243519-33243745)
chr7 (1-201)||(47994140-47994340)
chr7 (1-201)||(47999315-47999515)
chr7 (80-227)||(21080321-21080468)
chr7 (80-201)||(2233978-2234099)
chr7 (80-227)||(32211965-32212112)
chr7 (80-227)||(42572600-42572747)
chr7 (80-201)||(17496100-17496221)
chr7 (80-201)||(17556993-17557114)
chr7 (80-227)||(12935084-12935231)
chr7 (80-227)||(19308876-19309023)
chr7 (80-227)||(47176496-47176643)
chr7 (87-201)||(16538699-16538813)
chr7 (87-201)||(16626849-16626963)
chr7 (80-227)||(43893542-43893689)
chr7 (148-227)||(47544749-47544828)
chr7 (1-69)||(2234384-2234452)
chr7 (231-277)||(33241732-33241778)
chr7 (231-277)||(47997529-47997575)
chr7 (1-69)||(12934670-12934738)
chr7 (1-69)||(19309365-19309433)
chr7 (1-69)||(21080793-21080861)
chr7 (1-69)||(42572218-42572286)
chr7 (1-69)||(43893142-43893210)
chr7 (1-69)||(16539166-16539234)
chr7 (1-69)||(16626428-16626496)
chr7 (1-69)||(17495676-17495744)
chr7 (1-69)||(17557470-17557538)
chr7 (1-69)||(47176904-47176972)
chr7 (5-57)||(32212419-32212471)
[»] chr6 (20 HSPs)
chr6 (1-227)||(22697772-22697998)
chr6 (1-227)||(22702948-22703174)
chr6 (1-227)||(21402028-21402254)
chr6 (57-227)||(29490812-29490982)
chr6 (80-227)||(2817401-2817548)
chr6 (80-227)||(34142781-34142928)
chr6 (80-227)||(34155397-34155544)
chr6 (80-227)||(6727777-6727924)
chr6 (80-227)||(34376464-34376611)
chr6 (80-227)||(24190654-24190802)
chr6 (80-227)||(31983475-31983622)
chr6 (1-69)||(31981836-31981904)
chr6 (231-277)||(22699738-22699784)
chr6 (1-69)||(34376202-34376270)
chr6 (1-69)||(24191126-24191194)
chr6 (1-69)||(24192223-24192291)
chr6 (16-69)||(6728193-6728246)
chr6 (1-57)||(34142362-34142418)
chr6 (1-57)||(34154978-34155034)
chr6 (1-69)||(2817901-2817969)
[»] chr5 (22 HSPs)
chr5 (1-227)||(17510345-17510571)
chr5 (1-227)||(42019860-42020086)
chr5 (1-201)||(17505240-17505440)
chr5 (1-227)||(42024640-42024866)
chr5 (5-201)||(43579951-43580147)
chr5 (1-201)||(41858873-41859071)
chr5 (91-201)||(41853846-41853956)
chr5 (80-200)||(1413100-1413220)
chr5 (80-201)||(36254517-36254638)
chr5 (80-227)||(24770605-24770752)
chr5 (80-196)||(26709688-26709804)
chr5 (80-196)||(26979422-26979538)
chr5 (80-170)||(24776116-24776206)
chr5 (1-69)||(1413806-1413874)
chr5 (231-277)||(17508630-17508676)
chr5 (231-277)||(41857149-41857195)
chr5 (231-277)||(42023542-42023588)
chr5 (231-277)||(24772849-24772895)
chr5 (1-69)||(24776563-24776631)
chr5 (1-69)||(26709376-26709444)
chr5 (1-69)||(26979110-26979178)
chr5 (1-69)||(36254109-36254177)
[»] chr4 (35 HSPs)
chr4 (1-227)||(8984987-8985213)
chr4 (1-227)||(13700797-13701023)
chr4 (1-227)||(21304535-21304761)
chr4 (1-227)||(8979867-8980093)
chr4 (1-227)||(21299415-21299641)
chr4 (1-227)||(54991763-54991989)
chr4 (1-201)||(39999409-39999609)
chr4 (1-201)||(40004367-40004567)
chr4 (1-201)||(54343543-54343743)
chr4 (1-201)||(54348697-54348897)
chr4 (1-201)||(36359668-36359868)
chr4 (1-227)||(54990392-54990618)
chr4 (1-201)||(36354482-36354682)
chr4 (80-201)||(53798329-53798450)
chr4 (80-227)||(41393858-41394005)
chr4 (80-201)||(51018732-51018853)
chr4 (80-227)||(9763273-9763420)
chr4 (80-227)||(13695757-13695904)
chr4 (80-227)||(13711370-13711517)
chr4 (80-227)||(4207042-4207188)
chr4 (80-200)||(47045647-47045767)
chr4 (1-69)||(13695435-13695503)
chr4 (231-277)||(13699067-13699113)
chr4 (231-277)||(21301325-21301371)
chr4 (231-277)||(36357870-36357916)
chr4 (231-277)||(40002798-40002844)
chr4 (231-277)||(54346932-54346978)
chr4 (1-69)||(9763771-9763839)
chr4 (1-69)||(41393516-41393584)
chr4 (1-69)||(53797902-53797970)
chr4 (231-277)||(8981777-8981823)
chr4 (231-277)||(13702945-13702991)
chr4 (1-79)||(51019117-51019195)
chr4 (1-69)||(13710942-13711010)
chr4 (1-69)||(47046060-47046128)
[»] chr1 (18 HSPs)
chr1 (1-227)||(27711610-27711836)
chr1 (1-201)||(34317840-34318040)
chr1 (1-201)||(36684270-36684470)
chr1 (1-201)||(37404026-37404226)
chr1 (1-201)||(37409145-37409345)
chr1 (1-201)||(27716730-27716930)
chr1 (1-201)||(11250731-11250931)
chr1 (80-227)||(5725365-5725512)
chr1 (80-227)||(3585301-3585448)
chr1 (80-226)||(5730771-5730917)
chr1 (80-201)||(48245998-48246119)
chr1 (142-201)||(50959010-50959069)
chr1 (231-277)||(27715000-27715046)
chr1 (1-69)||(5730378-5730446)
chr1 (231-277)||(37405908-37405954)
chr1 (1-69)||(3584874-3584942)
chr1 (231-277)||(5728674-5728721)
chr1 (1-79)||(48246427-48246505)
[»] scaffold0517 (2 HSPs)
scaffold0517 (1-201)||(3850-4050)
scaffold0517 (231-277)||(2120-2166)
[»] scaffold0014 (3 HSPs)
scaffold0014 (1-201)||(31885-32085)
scaffold0014 (1-201)||(26713-26913)
scaffold0014 (231-277)||(30102-30148)
[»] scaffold0055 (1 HSPs)
scaffold0055 (1-201)||(3364-3564)
[»] scaffold0052 (1 HSPs)
scaffold0052 (1-201)||(80971-81171)
[»] chr8 (22 HSPs)
chr8 (1-201)||(32010866-32011066)
chr8 (1-201)||(32016040-32016240)
chr8 (1-227)||(2165394-2165621)
chr8 (80-227)||(43998546-43998693)
chr8 (80-227)||(17955134-17955281)
chr8 (80-201)||(24885324-24885445)
chr8 (80-227)||(42513848-42513995)
chr8 (80-170)||(21641184-21641273)
chr8 (231-277)||(21645574-21645620)
chr8 (1-79)||(24884986-24885064)
chr8 (231-277)||(32014255-32014301)
chr8 (1-69)||(21643835-21643903)
chr8 (1-69)||(21643020-21643088)
chr8 (1-69)||(21643395-21643463)
chr8 (1-61)||(42514182-42514242)
chr8 (1-69)||(21641520-21641588)
chr8 (1-69)||(21641895-21641963)
chr8 (1-69)||(21642270-21642338)
chr8 (1-69)||(21642645-21642713)
chr8 (233-273)||(19434003-19434043)
chr8 (233-273)||(19570152-19570192)
chr8 (5-69)||(43998984-43999048)
[»] chr2 (14 HSPs)
chr2 (1-201)||(42728175-42728375)
chr2 (1-200)||(42723007-42723206)
chr2 (13-227)||(40392618-40392832)
chr2 (1-201)||(44096642-44096842)
chr2 (10-201)||(44754161-44754352)
chr2 (10-201)||(44759327-44759518)
chr2 (10-198)||(40519929-40520122)
chr2 (1-201)||(40518075-40518280)
chr2 (80-227)||(4162895-4163042)
chr2 (80-227)||(28751021-28751168)
chr2 (231-277)||(42724940-42724986)
chr2 (231-277)||(44756092-44756138)
chr2 (1-69)||(4163331-4163399)
chr2 (1-69)||(28751483-28751551)
[»] chr3 (28 HSPs)
chr3 (1-227)||(20090191-20090417)
chr3 (1-227)||(20095316-20095542)
chr3 (1-201)||(15762585-15762785)
chr3 (1-201)||(15767746-15767946)
chr3 (1-201)||(55129077-55129276)
chr3 (1-194)||(17369006-17369199)
chr3 (80-227)||(3481649-3481796)
chr3 (80-201)||(34128437-34128558)
chr3 (80-201)||(17358566-17358686)
chr3 (80-201)||(30338126-30338247)
chr3 (80-227)||(30341204-30341351)
chr3 (80-201)||(54271312-54271433)
chr3 (80-170)||(3476249-3476339)
chr3 (80-170)||(4117007-4117097)
chr3 (1-69)||(3482166-3482234)
chr3 (231-277)||(3478439-3478485)
chr3 (231-277)||(15764511-15764557)
chr3 (231-277)||(17362634-17362680)
chr3 (231-277)||(17367276-17367322)
chr3 (231-277)||(20092142-20092188)
chr3 (1-69)||(17358111-17358179)
chr3 (1-69)||(54270918-54270986)
chr3 (1-69)||(4117345-4117413)
chr3 (1-69)||(30338506-30338574)
chr3 (1-69)||(34128923-34128991)
chr3 (1-69)||(3476699-3476767)
chr3 (1-69)||(10321716-10321784)
chr3 (18-69)||(30341720-30341771)
[»] scaffold0594 (2 HSPs)
scaffold0594 (80-227)||(8534-8681)
scaffold0594 (1-69)||(8962-9030)
[»] scaffold0166 (5 HSPs)
scaffold0166 (80-227)||(12986-13133)
scaffold0166 (80-170)||(18500-18590)
scaffold0166 (231-277)||(15233-15279)
scaffold0166 (1-69)||(13493-13561)
scaffold0166 (1-69)||(18946-19014)
[»] scaffold0060 (2 HSPs)
scaffold0060 (80-138)||(37654-37712)
scaffold0060 (1-79)||(37283-37361)
[»] scaffold0165 (1 HSPs)
scaffold0165 (231-277)||(15542-15588)


Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 33238342 - 33238568
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33238342 aaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 33238441  T
Q  101 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33238442 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 33238541  T
Q  201 gnnnnnnncattatacactagtgttcc 227  Q
    |       |||||||||||||||||||    
T  33238542 gtttttttcattatacactagtgttcc 33238568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 33243519 - 33243745
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33243519 aaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 33243618  T
Q  101 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  33243619 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacatgccaaaggctccacaaactcactagtatactccaa 33243718  T
Q  201 gnnnnnnncattatacactagtgttcc 227  Q
    |       |||||||||||||||||||    
T  33243719 gtttttttcattatacactagtgttcc 33243745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 47994140 - 47994340
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47994140 aaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 47994239  T
Q  101 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47994240 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 47994339  T
Q  201 g 201  Q
    |    
T  47994340 g 47994340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 47999315 - 47999515
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47999315 aaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 47999414  T
Q  101 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 200  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  47999415 ccgatgtgagacataaaattttcaattcacactttacactagtttctccatccttatgtttacattccaaaggctccacaaactcactaatatactccaa 47999514  T
Q  201 g 201  Q
    |    
T  47999515 g 47999515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 80 - 227
Target Start/End: Complemental strand, 21080468 - 21080321
Alignment:
Q  80 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 179  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21080468 ctactagagtgtgtgatctacccaacgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 21080369  T
Q  180 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 227  Q
    ||||  ||||||||||||||||       |||||||||||||||||||    
T  21080368 aaaccaactagtatactccaagttttttccattatacactagtgttcc 21080321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 80 - 201
Target Start/End: Complemental strand, 2234099 - 2233978
Alignment:
Q  80 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 179  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2234099 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttcttcatccttgtgtttacattccaaaggctccac 2234000  T
Q  180 aaactcactagtatactccaag 201  Q
    ||||  ||||||||||||||||    
T  2233999 aaaccaactagtatactccaag 2233978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 80 - 227
Target Start/End: Complemental strand, 32212112 - 32211965
Alignment:
Q  80 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 179  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  32212112 ctactagagtgtgtgatctacccaatgtgagacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaagtctcaac 32212013  T
Q  180 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 227  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  32212012 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 32211965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 80 - 227
Target Start/End: Original strand, 42572600 - 42572747
Alignment:
Q  80 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 179  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||    
T  42572600 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacatttcaaagtctccac 42572699  T
Q  180 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 227  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  42572700 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 42572747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 80 - 201
Target Start/End: Original strand, 17496100 - 17496221
Alignment:
Q  80 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 179  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||    
T  17496100 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacatttcaaagtctccac 17496199  T
Q  180 aaactcactagtatactccaag 201  Q
    | |   ||||||||||||||||    
T  17496200 ataacaactagtatactccaag 17496221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 80 - 201
Target Start/End: Complemental strand, 17557114 - 17556993
Alignment:
Q  80 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 179  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||    
T  17557114 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacatttcaaagtctccac 17557015  T
Q  180 aaactcactagtatactccaag 201  Q
    | |   ||||||||||||||||    
T  17557014 ataacaactagtatactccaag 17556993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 80 - 227
Target Start/End: Original strand, 12935084 - 12935231
Alignment:
Q  80 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 179  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||    
T  12935084 ctactaaagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacatttcaaagtctccac 12935183  T
Q  180 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 227  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  12935184 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 12935231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 80 - 227
Target Start/End: Complemental strand, 19309023 - 19308876
Alignment:
Q  80 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 179  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||    
T  19309023 ctactagagtgtgtgatctatccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacatttcaaagtctccac 19308924  T
Q  180 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 227  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  19308923 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 19308876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 80 - 227
Target Start/End: Complemental strand, 47176643 - 47176496
Alignment:
Q  80 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 179  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||| |    
T  47176643 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcctc 47176544  T
Q  180 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 227  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  47176543 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 47176496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 87 - 201
Target Start/End: Complemental strand, 16538813 - 16538699
Alignment:
Q  87 agtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactca 186  Q
    |||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||| |   |    
T  16538813 agtgtgtgatctactcaatatgggacataaaattttcaattcacactttacactagtttctacatccttgtgtctacattccaaagtctccacataacaa 16538714  T
Q  187 ctagtatactccaag 201  Q
    |||||||||||||||    
T  16538713 ctagtatactccaag 16538699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 87 - 201
Target Start/End: Original strand, 16626849 - 16626963
Alignment:
Q  87 agtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactca 186  Q
    |||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||| |   |    
T  16626849 agtgtgtgatctactcaatatgggacataaaattttcaattcacactttacactagtttctacatccttgtgtctacattccaaagtctccacataacaa 16626948  T
Q  187 ctagtatactccaag 201  Q
    |||||||||||||||    
T  16626949 ctagtatactccaag 16626963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 80 - 227
Target Start/End: Original strand, 43893542 - 43893689
Alignment:
Q  80 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 179  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||| | |||| |    
T  43893542 ctactagagtgtgtgatctacccaatgagggacataaaattttcaattcacactttacgctagtttctacatcattgtgtttacattccaatgtctcctc 43893641  T
Q  180 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 227  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  43893642 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 43893689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 148 - 227
Target Start/End: Complemental strand, 47544828 - 47544749
Alignment:
Q  148 ccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagnnnnnnncattatacactagtgttcc 227  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||       |||||||||||||||||||    
T  47544828 ccatccttgtgtttacattccaaaggctccacaaactctctagtatactccaagtttttttcattatacactagtgttcc 47544749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 2234452 - 2234384
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 69  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||||||| |||||||||||| |||||||    
T  2234452 aaaccagagaagaggattcgattctcggttttggagtgaagaatactaatcccgagctctctatttata 2234384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 231 - 277
Target Start/End: Original strand, 33241732 - 33241778
Alignment:
Q  231 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  33241732 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 33241778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 231 - 277
Target Start/End: Original strand, 47997529 - 47997575
Alignment:
Q  231 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  47997529 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 47997575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 12934670 - 12934738
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 69  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||| | |||||||||||||| |||||||    
T  12934670 aaaccagagaagaggattcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 12934738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 19309433 - 19309365
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 69  Q
    |||||||| ||||| ||| ||||||| ||||||||||||||||| | |||||||||||||| |||||||    
T  19309433 aaaccagagaagaggatttgattctcggttttggagtgaagaatcccattcccgagctctctatttata 19309365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 21080861 - 21080793
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 69  Q
    |||||||| ||||| |||||||||||||||||| |||||||||| | | |||||||||||| |||||||    
T  21080861 aaaccagagaagaggattcgattctcagttttgaagtgaagaatgcaaatcccgagctctctatttata 21080793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 42572218 - 42572286
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 69  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||| | ||||||||| |||| |||||||    
T  42572218 aaaccagagaagaggattcgattctcggttttggagtgaagaatcccattcccgagttctctatttata 42572286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 43893142 - 43893210
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 69  Q
    |||||||| ||||| |||||||||||  |||||||||||||||| | |||||||||||||| |||||||    
T  43893142 aaaccagagaagaggattcgattctcgattttggagtgaagaatcccattcccgagctctctatttata 43893210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 16539234 - 16539166
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 69  Q
    |||||||| ||||| |||  |||||| ||||||||||||||||| | |||||||||||||| |||||||    
T  16539234 aaaccagagaagaggatttaattctcggttttggagtgaagaatcccattcccgagctctctatttata 16539166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 16626428 - 16626496
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 69  Q
    |||||||| ||||| |||  |||||| ||||||||||||||||| | |||||||||||||| |||||||    
T  16626428 aaaccagagaagaggatttaattctcggttttggagtgaagaatcccattcccgagctctctatttata 16626496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 17495676 - 17495744
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 69  Q
    |||||||| ||||| |||| |||||| |||||||||| |||||| | |||||||||||||| |||||||    
T  17495676 aaaccagagaagaggattcaattctcggttttggagtaaagaatcccattcccgagctctctatttata 17495744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 17557538 - 17557470
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 69  Q
    |||||||| ||||| |||| |||||| |||||||||| |||||| | |||||||||||||| |||||||    
T  17557538 aaaccagagaagaggattcaattctcggttttggagtaaagaatcccattcccgagctctctatttata 17557470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 47176972 - 47176904
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 69  Q
    |||||||| ||||| |||||||| || |||||||||||||||||   |||||||||||||| |||||||    
T  47176972 aaaccagagaagaggattcgattatcggttttggagtgaagaatctcattcccgagctctctatttata 47176904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 32212471 - 32212419
Alignment:
Q  5 cagataagagtattcgattctcagttttggagtgaagaatactattcccgagc 57  Q
    |||| ||||| ||||||||||| ||||||||||||||||| | ||||||||||    
T  32212471 cagagaagaggattcgattctcggttttggagtgaagaatcccattcccgagc 32212419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 22697998 - 22697772
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22697998 aaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 22697899  T
Q  101 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22697898 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 22697799  T
Q  201 gnnnnnnncattatacactagtgttcc 227  Q
    |       |||||||||||||||||||    
T  22697798 gtttttttcattatacactagtgttcc 22697772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 22703174 - 22702948
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22703174 aaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 22703075  T
Q  101 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22703074 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 22702975  T
Q  201 gnnnnnnncattatacactagtgttcc 227  Q
    |       |||||||||||||||||||    
T  22702974 gtttttttcattatacactagtgttcc 22702948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 21402028 - 21402254
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 100  Q
    |||||| | |||||||||||||||| |||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  21402028 aaaccaaagaagagtattcgattcttagtttttgagtgatgaatactattcccaagctctcaatttataaggaggatttctactagagtgtgtgatctac 21402127  T
Q  101 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  21402128 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactactatactccaa 21402227  T
Q  201 gnnnnnnncattatacactagtgttcc 227  Q
    |       |||||||||||||||||||    
T  21402228 gtttttttcattatacactagtgttcc 21402254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 57 - 227
Target Start/End: Complemental strand, 29490982 - 29490812
Alignment:
Q  57 ctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttg 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29490982 ctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttg 29490883  T
Q  157 tgtttacattccaaaggctccacaaactcactagtatactccaagnnnnnnncattatacactagtgttcc 227  Q
    ||||||||||||||| |||||||||||||||||||||||||||||       |||||||||||||||||||    
T  29490882 tgtttacattccaaaagctccacaaactcactagtatactccaagtttttttcattatacactagtgttcc 29490812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 80 - 227
Target Start/End: Complemental strand, 2817548 - 2817401
Alignment:
Q  80 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 179  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2817548 ctactagagtgtgtgatctacccaatgtgggacattaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 2817449  T
Q  180 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 227  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  2817448 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 2817401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 80 - 227
Target Start/End: Original strand, 34142781 - 34142928
Alignment:
Q  80 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 179  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  34142781 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacattccaaagtctccac 34142880  T
Q  180 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 227  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  34142881 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 34142928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 80 - 227
Target Start/End: Original strand, 34155397 - 34155544
Alignment:
Q  80 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 179  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  34155397 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacattccaaagtctccac 34155496  T
Q  180 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 227  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  34155497 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 34155544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 80 - 227
Target Start/End: Complemental strand, 6727924 - 6727777
Alignment:
Q  80 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 179  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||| |    
T  6727924 ctactagagtgtgtgatctacccaatgtggaacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcctc 6727825  T
Q  180 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 227  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  6727824 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 6727777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 80 - 227
Target Start/End: Original strand, 34376464 - 34376611
Alignment:
Q  80 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 179  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||| |    
T  34376464 ctactagagtgtgttatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcctc 34376563  T
Q  180 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 227  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  34376564 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 34376611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 80 - 227
Target Start/End: Complemental strand, 24190802 - 24190654
Alignment:
Q  80 ctactagagtgtgtgatctacccgatgtgggacataaaa-ttttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctcca 178  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||| | ||||     
T  24190802 ctactagagtgtgtgatctacccaatgtgggacataaaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcct 24190703  T
Q  179 caaactcactagtatactccaagnnnnnnncattatacactagtgttcc 227  Q
    || |   ||||||||||||||||       || ||||||||||||||||    
T  24190702 cataacaactagtatactccaagtttttgccaatatacactagtgttcc 24190654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 80 - 227
Target Start/End: Original strand, 31983475 - 31983622
Alignment:
Q  80 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 179  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||| | |||| |    
T  31983475 ctactagagtgtgtgatctacccaatgcgggacataaaattttcaattcacactttacactaatttctacatcattgtgtttacattccaatgtctcctc 31983574  T
Q  180 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 227  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  31983575 ataaaaactagtatactccaagtttttgccaatatacactagtgttcc 31983622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 31981836 - 31981904
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 69  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||| | |||||||||||| |||||||    
T  31981836 aaaccagagaagagtattcgattctcggttttggagtgaagaataccaatcccgagctctctatttata 31981904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 231 - 277
Target Start/End: Complemental strand, 22699784 - 22699738
Alignment:
Q  231 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  22699784 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 22699738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 34376202 - 34376270
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 69  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||| | |||||||||||||| |||||||    
T  34376202 aaaccagagaagaggattcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 34376270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 24191194 - 24191126
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 69  Q
    |||||||| ||||| ||||||||||  ||||||||||||||||| | |||||||||||||| |||||||    
T  24191194 aaaccagagaagaggattcgattcttggttttggagtgaagaatcccattcccgagctctctatttata 24191126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 24192291 - 24192223
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 69  Q
    |||||||| ||||| ||||||||||  ||||||||||||||||| | |||||||||||||| |||||||    
T  24192291 aaaccagagaagaggattcgattcttggttttggagtgaagaatcccattcccgagctctctatttata 24192223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 6728246 - 6728193
Alignment:
Q  16 attcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 69  Q
    ||||||||||| ||||||||||||||||| | |||||||||||||| |||||||    
T  6728246 attcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 6728193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 34142362 - 34142418
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagc 57  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||| | ||||||||||    
T  34142362 aaaccagagaagaggattcgattctcggttttggagtgaagaatccaattcccgagc 34142418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 34154978 - 34155034
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagc 57  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||| | ||||||||||    
T  34154978 aaaccagagaagaggattcgattctcggttttggagtgaagaatccaattcccgagc 34155034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 2817969 - 2817901
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 69  Q
    |||||||| ||||| ||||||||||  |||||||||| ||||||   |||||||||||||| |||||||    
T  2817969 aaaccagagaagaggattcgattcttggttttggagtaaagaatctcattcccgagctctctatttata 2817901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 17510345 - 17510571
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17510345 aaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 17510444  T
Q  101 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17510445 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 17510544  T
Q  201 gnnnnnnncattatacactagtgttcc 227  Q
    |       |||||||||||||||||||    
T  17510545 gtttttttcattatacactagtgttcc 17510571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 42019860 - 42020086
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  42019860 aaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctat 42019959  T
Q  101 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 200  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42019960 ccgatgtgggacataaaattttcaattcacattttacattagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 42020059  T
Q  201 gnnnnnnncattatacactagtgttcc 227  Q
    |       |||||||||||||||||||    
T  42020060 gtttttttcattatacactagtgttcc 42020086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 17505240 - 17505440
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17505240 aaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 17505339  T
Q  101 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 200  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  17505340 ccgatgtgggacataaaattttcaattcacactttacaatagtttttccatccttgtgtttacattccaaaggctccacaaactcactagtatattccaa 17505439  T
Q  201 g 201  Q
    |    
T  17505440 g 17505440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 42024640 - 42024866
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 100  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  42024640 aaaccagagaagagtattcgattctcaattttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctat 42024739  T
Q  101 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 200  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||    
T  42024740 ccgatgtgggacataaaattttcaattcacattttacactagtttctccatccttatgtttacattccaaaggctccacaaactcactagtatacttcaa 42024839  T
Q  201 gnnnnnnncattatacactagtgttcc 227  Q
    |       |||||||||||||||||||    
T  42024840 gtttttttcattatacactagtgttcc 42024866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 5 - 201
Target Start/End: Original strand, 43579951 - 43580147
Alignment:
Q  5 cagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccga 104  Q
    |||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  43579951 cagagaagagtattcgattctcagttttggtgtgaaaaatactattcccgagctctcaatttataaggaggatttctactagagtatgtgatctacccga 43580050  T
Q  105 tgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43580051 tgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 43580147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 41858873 - 41859071
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||    
T  41858873 aaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggagaatttctactagagtgt--gatctac 41858970  T
Q  101 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 200  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41858971 ccgatgtgggacatagaattttcaattcacactttacactaatttttccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 41859070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 91 - 201
Target Start/End: Original strand, 41853846 - 41853956
Alignment:
Q  91 tgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactag 190  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  41853846 tgtgatctacccgatgtgggacatagaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactccctag 41853945  T
Q  191 tatactccaag 201  Q
    |||||||||||    
T  41853946 tatactccaag 41853956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 80 - 200
Target Start/End: Complemental strand, 1413220 - 1413100
Alignment:
Q  80 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 179  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1413220 ctactagagtgtgtgatctactcaatgtgggacataaaattttcaattcacactttacactagtttcttcatccttgtgtttacattccaaaggctccac 1413121  T
Q  180 aaactcactagtatactccaa 200  Q
    | |   |||||||||||||||    
T  1413120 ataacaactagtatactccaa 1413100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 80 - 201
Target Start/End: Original strand, 36254517 - 36254638
Alignment:
Q  80 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 179  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||    
T  36254517 ctactagagtgtgtgatctacccaatgtggaacataaaattttcaattcacactttacactagtttctacatccttgtgtttacattccaatgtctccac 36254616  T
Q  180 aaactcactagtatactccaag 201  Q
    | |   ||||||||||||||||    
T  36254617 ataacaactagtatactccaag 36254638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 80 - 227
Target Start/End: Complemental strand, 24770752 - 24770605
Alignment:
Q  80 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 179  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||| |    
T  24770752 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcctc 24770653  T
Q  180 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 227  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  24770652 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 24770605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 80 - 196
Target Start/End: Original strand, 26709688 - 26709804
Alignment:
Q  80 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 179  Q
    |||||| | ||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  26709688 ctactacaatgtgtaatctactcaatgtgggacataaaattttcaattcacactttacactagtttctccattcttgtgtttacattccataggctccac 26709787  T
Q  180 aaactcactagtatact 196  Q
    ||||  |||||||||||    
T  26709788 aaaccaactagtatact 26709804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 80 - 196
Target Start/End: Original strand, 26979422 - 26979538
Alignment:
Q  80 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 179  Q
    |||||| | ||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  26979422 ctactacaatgtgtaatctactcaatgtgggacataaaattttcaattcacactttacactagtttctccattcttgtgtttacattccataggctccac 26979521  T
Q  180 aaactcactagtatact 196  Q
    ||||  |||||||||||    
T  26979522 aaaccaactagtatact 26979538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 80 - 170
Target Start/End: Complemental strand, 24776206 - 24776116
Alignment:
Q  80 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaa 170  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||    
T  24776206 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttatactagtttctacatcattgtgtttacattccaa 24776116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 1413874 - 1413806
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 69  Q
    |||||||||||||| ||||||||||| ||||||||||||||||| | |||||||||||||| |||||||    
T  1413874 aaaccagataagaggattcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 1413806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 231 - 277
Target Start/End: Original strand, 17508630 - 17508676
Alignment:
Q  231 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  17508630 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 17508676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 231 - 277
Target Start/End: Original strand, 41857149 - 41857195
Alignment:
Q  231 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  41857149 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 41857195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 231 - 277
Target Start/End: Original strand, 42023542 - 42023588
Alignment:
Q  231 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  42023542 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 42023588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 231 - 277
Target Start/End: Complemental strand, 24772895 - 24772849
Alignment:
Q  231 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 277  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  24772895 catcagtggcgtaccttttcccaacaaaaataccattcttagtgatg 24772849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 24776631 - 24776563
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 69  Q
    |||||||| ||||||||||||||||| |||||||||| |||||||| | ||| |||||||| |||||||    
T  24776631 aaaccagagaagagtattcgattctcggttttggagtaaagaataccaatcctgagctctctatttata 24776563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 26709376 - 26709444
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 69  Q
    |||||| | ||||| |||| |||||||||||||||||||||||| | | |||||||||||| |||||||    
T  26709376 aaaccaaagaagaggattcaattctcagttttggagtgaagaatgcaaatcccgagctctctatttata 26709444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 26979110 - 26979178
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 69  Q
    |||||| | ||||| |||| |||||||||||||||||||||||| | | |||||||||||| |||||||    
T  26979110 aaaccaaagaagaggattcaattctcagttttggagtgaagaatgcaaatcccgagctctctatttata 26979178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 36254109 - 36254177
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 69  Q
    |||| ||| ||||| ||||||||||| ||||||||||||||||| | |||||| ||||||| |||||||    
T  36254109 aaactagagaagaggattcgattctcggttttggagtgaagaatcccattcccaagctctctatttata 36254177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 8985213 - 8984987
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8985213 aaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 8985114  T
Q  101 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8985113 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 8985014  T
Q  201 gnnnnnnncattatacactagtgttcc 227  Q
    |       |||||||||||||||||||    
T  8985013 gtttttttcattatacactagtgttcc 8984987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 13700797 - 13701023
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13700797 aaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 13700896  T
Q  101 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13700897 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 13700996  T
Q  201 gnnnnnnncattatacactagtgttcc 227  Q
    |       |||||||||||||||||||    
T  13700997 gtttttttcattatacactagtgttcc 13701023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 21304761 - 21304535
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21304761 aaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 21304662  T
Q  101 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21304661 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 21304562  T
Q  201 gnnnnnnncattatacactagtgttcc 227  Q
    |       |||||||||||||||||||    
T  21304561 gtttttttcattatacactagtgttcc 21304535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 8980093 - 8979867
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8980093 aaaccagagaagagtattcgattctcagttttggagtgaagaatactattctcgagctctcaatttataaggaggatttctactagagtgtgtgatctac 8979994  T
Q  101 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 200  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8979993 ccgatatgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 8979894  T
Q  201 gnnnnnnncattatacactagtgttcc 227  Q
    |       |||||||||||||||||||    
T  8979893 gtttttttcattatacactagtgttcc 8979867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 21299641 - 21299415
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 100  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21299641 aaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 21299542  T
Q  101 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21299541 ccgatgtgggacataaaattttcaattcacactttacactagtttcttcatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 21299442  T
Q  201 gnnnnnnncattatacactagtgttcc 227  Q
    |       |||||||||||||||||||    
T  21299441 gtttttttcattatacactagtgttcc 21299415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 54991763 - 54991989
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 100  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  54991763 aaaccagagaagagtattcgattctcagttttgaagtgaagaatactattcccgagctttcaatttataaggaggatttctactagagtgtgtgatctat 54991862  T
Q  101 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54991863 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 54991962  T
Q  201 gnnnnnnncattatacactagtgttcc 227  Q
    |       |||||||||||||||||||    
T  54991963 gtttttttcattatacactagtgttcc 54991989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 39999409 - 39999609
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39999409 aaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 39999508  T
Q  101 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  39999509 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttatgtttacatgccaaaggctccacaaactcactagtatactccaa 39999608  T
Q  201 g 201  Q
    |    
T  39999609 g 39999609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 40004367 - 40004567
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40004367 aaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 40004466  T
Q  101 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  40004467 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttatgtttacatgccaaaggctccacaaactcactagtatactccaa 40004566  T
Q  201 g 201  Q
    |    
T  40004567 g 40004567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 54343543 - 54343743
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54343543 aaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 54343642  T
Q  101 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  54343643 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttatgtttacatgccaaaggctccacaaactcactagtatactccaa 54343742  T
Q  201 g 201  Q
    |    
T  54343743 g 54343743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 54348697 - 54348897
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54348697 aaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 54348796  T
Q  101 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  54348797 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttatgtttacatgccaaaggctccacaaactcactagtatactccaa 54348896  T
Q  201 g 201  Q
    |    
T  54348897 g 54348897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 36359668 - 36359868
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 100  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  36359668 aaaccagagaagagtattcgattctcagttttggagtaaagaatactattcctgagctctcaatttataaggagaatttctactagagtgtgtgatctac 36359767  T
Q  101 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  36359768 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgttaacatttcaaaggctccacaaactcactagtatactccaa 36359867  T
Q  201 g 201  Q
    |    
T  36359868 g 36359868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 54990618 - 54990392
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 100  Q
    |||| ||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||     
T  54990618 aaacaagagaagagtatttgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggagaatttctactagagtgtgtgatctat 54990519  T
Q  101 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  54990518 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgttaacattccaaaggctccacaaactcactagtatactccaa 54990419  T
Q  201 gnnnnnnncattatacactagtgttcc 227  Q
    |       ||||||||| |||||||||    
T  54990418 gtttttttcattatacattagtgttcc 54990392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 36354482 - 36354682
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 100  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||    
T  36354482 aaaccagagaagagtattcgattctcagttttggagtaaagaatactatttctgagctctcaatttataaagaggatttctactagagtgtgtgatctac 36354581  T
Q  101 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  36354582 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgttaacattccaaaggctccacaaattcactagtatactccaa 36354681  T
Q  201 g 201  Q
    |    
T  36354682 g 36354682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 80 - 201
Target Start/End: Original strand, 53798329 - 53798450
Alignment:
Q  80 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 179  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  53798329 ctactagagtgtgtgatctacccaatgtaggacataaaattttcaattcacactttacactagtttctccattcttgtgtttacattccaaaggctccac 53798428  T
Q  180 aaactcactagtatactccaag 201  Q
    ||||  ||||||||||||||||    
T  53798429 aaaccaactagtatactccaag 53798450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 80 - 227
Target Start/End: Original strand, 41393858 - 41394005
Alignment:
Q  80 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 179  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||    
T  41393858 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttttccatccttgtgtttacattccaaaggcttcac 41393957  T
Q  180 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 227  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  41393958 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 41394005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 80 - 201
Target Start/End: Complemental strand, 51018853 - 51018732
Alignment:
Q  80 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 179  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||    
T  51018853 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtgtacattccaaagtctccac 51018754  T
Q  180 aaactcactagtatactccaag 201  Q
    | |   ||||||||| ||||||    
T  51018753 ataacaactagtatattccaag 51018732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 80 - 227
Target Start/End: Complemental strand, 9763420 - 9763273
Alignment:
Q  80 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 179  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||| ||||||    
T  9763420 ctactagagtgtgtgatctactcaatgtgggacataaaattttcaattcatgctttacactagtttctacatccttgtgtttacattccaaagtctccac 9763321  T
Q  180 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 227  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  9763320 ataacaactagtatactccaagtttatgccaatatacactagtgttcc 9763273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 80 - 227
Target Start/End: Original strand, 13695757 - 13695904
Alignment:
Q  80 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 179  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||| |    
T  13695757 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcctc 13695856  T
Q  180 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 227  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  13695857 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 13695904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 80 - 227
Target Start/End: Original strand, 13711370 - 13711517
Alignment:
Q  80 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 179  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||| |    
T  13711370 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcctc 13711469  T
Q  180 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 227  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  13711470 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 13711517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 80 - 227
Target Start/End: Original strand, 4207042 - 4207188
Alignment:
Q  80 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 179  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||| | |||| |    
T  4207042 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtg-ttacattccaatgtctcctc 4207140  T
Q  180 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 227  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  4207141 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 4207188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 80 - 200
Target Start/End: Complemental strand, 47045767 - 47045647
Alignment:
Q  80 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 179  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||   || |||||||||||||| || | |||| |    
T  47045767 ctactagagtgtgtgatctatccaatgtgggacataaaattttcaattcacactttacactagtttctatttcattgtgtttacattctaatgtctcctc 47045668  T
Q  180 aaactcactagtatactccaa 200  Q
    | |   |||||||||||||||    
T  47045667 ataacaactagtatactccaa 47045647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 13695435 - 13695503
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 69  Q
    |||||||| ||||||||||||||||| ||||||||||||||||| | |||||||||||||| |||||||    
T  13695435 aaaccagagaagagtattcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 13695503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 231 - 277
Target Start/End: Original strand, 13699067 - 13699113
Alignment:
Q  231 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  13699067 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 13699113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 231 - 277
Target Start/End: Complemental strand, 21301371 - 21301325
Alignment:
Q  231 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  21301371 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 21301325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 231 - 277
Target Start/End: Original strand, 36357870 - 36357916
Alignment:
Q  231 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  36357870 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 36357916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 231 - 277
Target Start/End: Original strand, 40002798 - 40002844
Alignment:
Q  231 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  40002798 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 40002844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 231 - 277
Target Start/End: Original strand, 54346932 - 54346978
Alignment:
Q  231 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  54346932 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 54346978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 9763839 - 9763771
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 69  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||||| | |||||||||||| |||||||    
T  9763839 aaaccagagaagaggattcgattctcggttttggagtgaagaataccaatcccgagctctctatttata 9763771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 41393516 - 41393584
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 69  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||| | |||||||||||||| |||||||    
T  41393516 aaaccagagaagaggattcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 41393584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 53797902 - 53797970
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 69  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||| ||| |||||||||||| |||||||    
T  53797902 aaaccagagaagaggattcgattctcggttttggagtgaagaatgctaatcccgagctctctatttata 53797970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 231 - 277
Target Start/End: Complemental strand, 8981823 - 8981777
Alignment:
Q  231 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 277  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||    
T  8981823 catcaatggcgtaccctttcccaacaaaaataccattcttagtgatg 8981777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 231 - 277
Target Start/End: Original strand, 13702945 - 13702991
Alignment:
Q  231 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 277  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||    
T  13702945 catcagtggcgtaccctttcccaacaaaagtaccattcttagtgatg 13702991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 51019195 - 51019117
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggattt 79  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||| | ||||||||| |||| |||||||  ||||||||    
T  51019195 aaaccagagaagaggattcgattctcggttttggagtgaagaatcccattcccgaggtctctatttatagagaggattt 51019117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 13710942 - 13711010
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 69  Q
    |||||||| ||||| ||||||||||  ||||||||||||||||| | |||||||||||||| |||||||    
T  13710942 aaaccagagaagaggattcgattcttggttttggagtgaagaatcccattcccgagctctctatttata 13711010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 47046128 - 47046060
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 69  Q
    |||||||| ||||  ||||||||||| ||||||||||||||||| | |||||||||||||| |||||||    
T  47046128 aaaccagagaagatgattcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 47046060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 27711610 - 27711836
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27711610 aaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 27711709  T
Q  101 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27711710 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 27711809  T
Q  201 gnnnnnnncattatacactagtgttcc 227  Q
    |       |||||||||||||||||||    
T  27711810 gtttttttcattatacactagtgttcc 27711836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 34318040 - 34317840
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34318040 aaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 34317941  T
Q  101 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34317940 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 34317841  T
Q  201 g 201  Q
    |    
T  34317840 g 34317840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 36684470 - 36684270
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 100  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36684470 aaaccagagaagagtattcgattctcagttttggagtcaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 36684371  T
Q  101 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36684370 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 36684271  T
Q  201 g 201  Q
    |    
T  36684270 g 36684270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 37404226 - 37404026
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  37404226 aaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgggctctcaatttataaggaggatttctactagagtgtgtgatctac 37404127  T
Q  101 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37404126 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 37404027  T
Q  201 g 201  Q
    |    
T  37404026 g 37404026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 37409345 - 37409145
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  37409345 aaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttatactagagtgtgtgatctac 37409246  T
Q  101 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37409245 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 37409146  T
Q  201 g 201  Q
    |    
T  37409145 g 37409145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 27716730 - 27716930
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27716730 aaaccagataagagtattcgattatcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 27716829  T
Q  101 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 200  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  27716830 ccgatgtgggacataaaaatttcaattcacactttacactagtttctccatccttgtgcttacgttccaaaggctccacaaactcactagtatactccaa 27716929  T
Q  201 g 201  Q
    |    
T  27716930 g 27716930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 11250931 - 11250731
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 100  Q
    |||||||| |||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||     
T  11250931 aaaccagagaagagtattcgattctcaattttggagtaaagaatactattcacgagctctcaatttataaggaggatttctactagagtgtgtgatctaa 11250832  T
Q  101 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  11250831 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaagactccacaaactcactggtatactccaa 11250732  T
Q  201 g 201  Q
    |    
T  11250731 g 11250731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 80 - 227
Target Start/End: Original strand, 5725365 - 5725512
Alignment:
Q  80 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 179  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5725365 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 5725464  T
Q  180 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 227  Q
    ||||  ||||||||||||||||       |||||||||||||||||||    
T  5725465 aaaccaactagtatactccaagttttttccattatacactagtgttcc 5725512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 80 - 227
Target Start/End: Original strand, 3585301 - 3585448
Alignment:
Q  80 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 179  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3585301 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacattttacactagtttctccatccttgtgtttacattccaaaggctccac 3585400  T
Q  180 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 227  Q
    ||||  ||||||||||||||||       || ||||||||||||||||    
T  3585401 aaaccaactagtatactccaagttttttccaatatacactagtgttcc 3585448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 80 - 226
Target Start/End: Original strand, 5730771 - 5730917
Alignment:
Q  80 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 179  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  5730771 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggtttcac 5730870  T
Q  180 aaactcactagtatactccaagnnnnnnncattatacactagtgttc 226  Q
    ||||  |||||||||||||||        ||||||||||||||||||    
T  5730871 aaaccaactagtatactccaaattttttccattatacactagtgttc 5730917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 80 - 201
Target Start/End: Complemental strand, 48246119 - 48245998
Alignment:
Q  80 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 179  Q
    ||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  48246119 ctactagagtgtgtgatctacccaatgtgggacataaaaattttaattcacactttacactagtttctacatccttgtgtttacattccaaagtctccac 48246020  T
Q  180 aaactcactagtatactccaag 201  Q
    | |   ||||||||||||||||    
T  48246019 ataacaactagtatactccaag 48245998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 142 - 201
Target Start/End: Complemental strand, 50959069 - 50959010
Alignment:
Q  142 gtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 201  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  50959069 gtttctccattcttgtgtttacattccaaaggctccacaaactcactagtatactccaag 50959010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 231 - 277
Target Start/End: Original strand, 27715000 - 27715046
Alignment:
Q  231 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  27715000 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 27715046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 5730378 - 5730446
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 69  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||| | | |||||||||||| |||||||    
T  5730378 aaaccagagaagaggattcgattctcggttttggagtgaagaatgcaaatcccgagctctctatttata 5730446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 231 - 277
Target Start/End: Complemental strand, 37405954 - 37405908
Alignment:
Q  231 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 277  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||    
T  37405954 catcagtggcgtaccctttcccaacaaaattatcattcttagtgatg 37405908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 3584874 - 3584942
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 69  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||| | | ||| |||||||| |||||||    
T  3584874 aaaccagagaagaggattcgattctcggttttggagtgaagaatgcaaatcctgagctctctatttata 3584942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 277
Target Start/End: Original strand, 5728674 - 5728721
Alignment:
Q  231 catcagtggcgtaccctttcccaac-aaaaataccattcttagtgatg 277  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  5728674 catcagtggcgtaccctttcccaacaaaaaatatcattcttagtgatg 5728721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 48246505 - 48246427
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggattt 79  Q
    |||||||| ||||| ||||||||||| |||||| |||||||||| | ||| ||||| |||| |||||||  ||||||||    
T  48246505 aaaccagagaagaggattcgattctcggttttgtagtgaagaatcccatttccgaggtctctatttatagagaggattt 48246427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 3850 - 4050
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3850 aaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 3949  T
Q  101 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3950 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 4049  T
Q  201 g 201  Q
    |    
T  4050 g 4050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 231 - 277
Target Start/End: Original strand, 2120 - 2166
Alignment:
Q  231 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  2120 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 2166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 31885 - 32085
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31885 aaaccagataagagtattcgattctcagttttggtgtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 31984  T
Q  101 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31985 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 32084  T
Q  201 g 201  Q
    |    
T  32085 g 32085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 26713 - 26913
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26713 aaaccagataagagtattcgattctcagttttggtgtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 26812  T
Q  101 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26813 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttttgtttacattccaaaggctccacaaactcactagtatactccaa 26912  T
Q  201 g 201  Q
    |    
T  26913 g 26913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 231 - 277
Target Start/End: Original strand, 30102 - 30148
Alignment:
Q  231 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  30102 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 30148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 3364 - 3564
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3364 aaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 3463  T
Q  101 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3464 cggatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 3563  T
Q  201 g 201  Q
    |    
T  3564 g 3564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 81171 - 80971
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  81171 aaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 81072  T
Q  101 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  81071 cggatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 80972  T
Q  201 g 201  Q
    |    
T  80971 g 80971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 32010866 - 32011066
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  32010866 aaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtatgatctac 32010965  T
Q  101 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32010966 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 32011065  T
Q  201 g 201  Q
    |    
T  32011066 g 32011066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 32016040 - 32016240
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32016040 aaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 32016139  T
Q  101 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 200  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  32016140 ccaatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaattcactagtatactccaa 32016239  T
Q  201 g 201  Q
    |    
T  32016240 g 32016240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 2165621 - 2165394
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 100  Q
    |||| ||| ||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2165621 aaactagagaagagcatttgattctcaattttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 2165522  T
Q  101 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacatt-ccaaaggctccacaaactcactagtatactcca 199  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  2165521 ccgatgtgagacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattcccaaagactccacaaactcactagtatactcca 2165422  T
Q  200 agnnnnnnncattatacactagtgttcc 227  Q
    |        |||||||||||||||||||    
T  2165421 aaattttttcattatacactagtgttcc 2165394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 80 - 227
Target Start/End: Complemental strand, 43998693 - 43998546
Alignment:
Q  80 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 179  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  43998693 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacatttcaaaggctccac 43998594  T
Q  180 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 227  Q
    ||||  ||||||||||||||||       |||||||||||||||||||    
T  43998593 aaaccaactagtatactccaagtttttttcattatacactagtgttcc 43998546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 80 - 227
Target Start/End: Complemental strand, 17955281 - 17955134
Alignment:
Q  80 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 179  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  17955281 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacacttcacactagtttctccatccttgtgtttacattccaaaggctccac 17955182  T
Q  180 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 227  Q
    |||   |||||||||||| |||       |||||||||||||||||||    
T  17955181 aaaacaactagtatactctaagtcttttccattatacactagtgttcc 17955134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 80 - 201
Target Start/End: Original strand, 24885324 - 24885445
Alignment:
Q  80 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 179  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  24885324 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacattccaaagtctccac 24885423  T
Q  180 aaactcactagtatactccaag 201  Q
    | |   ||||||||||||||||    
T  24885424 ataacaactagtatactccaag 24885445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 80 - 227
Target Start/End: Complemental strand, 42513995 - 42513848
Alignment:
Q  80 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 179  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| | ||||||    
T  42513995 ctactagagtgtgtgatctatccaatgtgggacataaaattttcaattcacactttacactattttctacatccttgtgtttacattccaatgtctccac 42513896  T
Q  180 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 227  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  42513895 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 42513848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 80 - 170
Target Start/End: Complemental strand, 21641273 - 21641184
Alignment:
Q  80 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaa 170  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||| ||||||||| ||||||||||||    
T  21641273 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactag-atctacatccttgtatttacattccaa 21641184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 231 - 277
Target Start/End: Complemental strand, 21645620 - 21645574
Alignment:
Q  231 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  21645620 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 21645574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 24884986 - 24885064
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggattt 79  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||| | |||||||||||||| |||||||  ||||||||    
T  24884986 aaaccagagaagaggattcgattctcggttttggagtgaagaattccattcccgagctctctatttatagagaggattt 24885064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 231 - 277
Target Start/End: Original strand, 32014255 - 32014301
Alignment:
Q  231 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  32014255 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 32014301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 21643903 - 21643835
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 69  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||| | ||||||||| |||| |||||||    
T  21643903 aaaccagagaagaggattcgattctcggttttggagtgaagaatcccattcccgaggtctctatttata 21643835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 21643088 - 21643020
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 69  Q
    |||||| | ||||| ||||||||||| ||||||||||||||||| | ||||||||| |||| |||||||    
T  21643088 aaaccaaagaagaggattcgattctcggttttggagtgaagaatcccattcccgaggtctctatttata 21643020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 21643463 - 21643395
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 69  Q
    |||||| | ||||| ||||||||||| ||||||||||||||||| | ||||||||| |||| |||||||    
T  21643463 aaaccaaagaagaggattcgattctcggttttggagtgaagaatcccattcccgaggtctctatttata 21643395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 42514242 - 42514182
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctc 61  Q
    |||||||| ||||| ||||||||||| |||||||||||||||||   ||||||||||||||    
T  42514242 aaaccagagaagaggattcgattctcggttttggagtgaagaatctcattcccgagctctc 42514182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 21641588 - 21641520
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 69  Q
    |||||| | ||||| |||||||||||  |||||||||||||||| | ||||||||| |||| |||||||    
T  21641588 aaaccaaagaagaggattcgattctcgattttggagtgaagaatcccattcccgaggtctctatttata 21641520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 21641963 - 21641895
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 69  Q
    |||||| | ||||| |||||||||||  |||||||||||||||| | ||||||||| |||| |||||||    
T  21641963 aaaccaaagaagaggattcgattctcgattttggagtgaagaatcccattcccgaggtctctatttata 21641895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 21642338 - 21642270
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 69  Q
    |||||| | ||||| |||||||||||  |||||||||||||||| | ||||||||| |||| |||||||    
T  21642338 aaaccaaagaagaggattcgattctcgattttggagtgaagaatcccattcccgaggtctctatttata 21642270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 21642713 - 21642645
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 69  Q
    |||||| | ||||| |||||||||||  |||||||||||||||| | ||||||||| |||| |||||||    
T  21642713 aaaccaaagaagaggattcgattctcgattttggagtgaagaatcccattcccgaggtctctatttata 21642645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 19434003 - 19434043
Alignment:
Q  233 tcagtggcgtaccctttcccaacaaaaataccattcttagt 273  Q
    ||||||||||||||||||||||||||||  |||| ||||||    
T  19434003 tcagtggcgtaccctttcccaacaaaaaccccatccttagt 19434043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 19570152 - 19570192
Alignment:
Q  233 tcagtggcgtaccctttcccaacaaaaataccattcttagt 273  Q
    ||||||||||||||||||||||||||||  |||| ||||||    
T  19570152 tcagtggcgtaccctttcccaacaaaaaccccatccttagt 19570192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 43999048 - 43998984
Alignment:
Q  5 cagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 69  Q
    |||| ||||| ||||||||||||||||| |||| ||||||   | |||||||||||| |||||||    
T  43999048 cagagaagaggattcgattctcagttttagagtaaagaatgtaaatcccgagctctctatttata 43998984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 42728375 - 42728175
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42728375 aaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 42728276  T
Q  101 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  42728275 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtaaactccaa 42728176  T
Q  201 g 201  Q
    |    
T  42728175 g 42728175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 42723206 - 42723007
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42723206 aaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 42723107  T
Q  101 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  42723106 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtaaactccaa 42723007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 227
Target Start/End: Original strand, 40392618 - 40392832
Alignment:
Q  13 agtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggac 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40392618 agtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggac 40392717  T
Q  113 ataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagnnnnnnncatt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||       ||||    
T  40392718 ataaaattttcaattcacactttacactagtttctccatccttatgtttacattgcaaaggctccacaaactcactagtatactccaagtttttttcatt 40392817  T
Q  213 atacactagtgttcc 227  Q
    |||||||||||||||    
T  40392818 atacactagtgttcc 40392832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 44096642 - 44096842
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 100  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44096642 aaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 44096741  T
Q  101 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  44096742 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttttgtttacattccaaatgctccacaaactcactagtatactccaa 44096841  T
Q  201 g 201  Q
    |    
T  44096842 g 44096842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 10 - 201
Target Start/End: Complemental strand, 44754352 - 44754161
Alignment:
Q  10 aagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgg 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44754352 aagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgg 44754253  T
Q  110 gacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  44754252 gacataaaattttcaattcacactttacactagtttctccatccttatgtttacatgccaaaggctccacaaactcactagtatactccaag 44754161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 10 - 201
Target Start/End: Complemental strand, 44759518 - 44759327
Alignment:
Q  10 aagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgg 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44759518 aagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgg 44759419  T
Q  110 gacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 201  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  44759418 gacataaaattttcaattcacactttacactaatttctccatccttatgtttacatgccaaaggctccacaaactcactagtatactccaag 44759327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 10 - 198
Target Start/End: Original strand, 40519929 - 40520122
Alignment:
Q  10 aagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttat----aaggaggatttctactagagtgtgtgatctaccc-ga 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||| ||    
T  40519929 aagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttattcataaggaggatttctactagagtgtgtgatctaccccga 40520028  T
Q  105 tgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactcc 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40520029 tgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactcc 40520122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 40518280 - 40518075
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttat----aaggaggatttctactagagtgtgtgat 96  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    ||||||||||||||||||||||||||||    
T  40518280 aaacaagagaagagtattcgattctcagttttggagtgaagaatactattcacgagctctcaatttattaataaggaggatttctactagagtgtgtgat 40518181  T
Q  97 ctaccc-gatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatac 195  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  40518180 ctaccccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttatattccaaaggctccacaaactcactattatac 40518081  T
Q  196 tccaag 201  Q
    ||||||    
T  40518080 tccaag 40518075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 80 - 227
Target Start/End: Complemental strand, 4163042 - 4162895
Alignment:
Q  80 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 179  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4163042 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 4162943  T
Q  180 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 227  Q
    ||||  ||||||||||||||||       |||||||||| ||||||||    
T  4162942 aaaccaactagtatactccaagttttttccattatacaccagtgttcc 4162895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 80 - 227
Target Start/End: Complemental strand, 28751168 - 28751021
Alignment:
Q  80 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 179  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28751168 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 28751069  T
Q  180 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 227  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  28751068 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 28751021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 231 - 277
Target Start/End: Complemental strand, 42724986 - 42724940
Alignment:
Q  231 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  42724986 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 42724940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 231 - 277
Target Start/End: Complemental strand, 44756138 - 44756092
Alignment:
Q  231 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  44756138 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 44756092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 4163399 - 4163331
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 69  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||| | | |||||||||||| |||||||    
T  4163399 aaaccagagaagaggattcgattctcggttttggagtgaagaatgcaaatcccgagctctctatttata 4163331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 28751551 - 28751483
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 69  Q
    |||||| | ||||| ||||||||||| |||||||||||||||||   |||||||||||||| |||||||    
T  28751551 aaaccaaagaagaggattcgattctcggttttggagtgaagaatctcattcccgagctctctatttata 28751483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 20090417 - 20090191
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20090417 aaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 20090318  T
Q  101 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||    
T  20090317 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatcctgatgtttacatgccaaaggctccacaaactcactagtatactccaa 20090218  T
Q  201 gnnnnnnncattatacactagtgttcc 227  Q
    |       |||||||||||||||||||    
T  20090217 gtttttttcattatacactagtgttcc 20090191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 20095542 - 20095316
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20095542 aaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 20095443  T
Q  101 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||    
T  20095442 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatcctgatgtttacatgccaaaggctccacaaactcactagtatactccaa 20095343  T
Q  201 gnnnnnnncattatacactagtgttcc 227  Q
    |       |||||||||||||||||||    
T  20095342 gtttttttcattatacactagtgttcc 20095316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 15762785 - 15762585
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15762785 aaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 15762686  T
Q  101 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  15762685 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttatgtttacatgccaaaggctccacaaactcactagtatactccaa 15762586  T
Q  201 g 201  Q
    |    
T  15762585 g 15762585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 15767946 - 15767746
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15767946 aaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 15767847  T
Q  101 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  15767846 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttatgtttacatgccaaaggctccacaaactcactagtatactccaa 15767747  T
Q  201 g 201  Q
    |    
T  15767746 g 15767746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 55129077 - 55129276
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55129077 aaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 55129176  T
Q  101 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  55129177 ccgatgtgggacataaaattttcaattcacactttacactagtttctccat-cttgtgtttacattccaaaggctccacaaactcactagtatactccaa 55129275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 17369006 - 17369199
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17369006 aaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctac 17369105  T
Q  101 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtata 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  17369106 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaaccaactagtata 17369199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 80 - 227
Target Start/End: Complemental strand, 3481796 - 3481649
Alignment:
Q  80 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 179  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3481796 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 3481697  T
Q  180 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 227  Q
    ||||||||||||||||||||||       |||||||||||||||||||    
T  3481696 aaactcactagtatactccaagtttttttcattatacactagtgttcc 3481649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 80 - 201
Target Start/End: Complemental strand, 34128558 - 34128437
Alignment:
Q  80 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 179  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34128558 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 34128459  T
Q  180 aaactcactagtatactccaag 201  Q
    |||   ||||||||||||||||    
T  34128458 aaatcaactagtatactccaag 34128437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 80 - 201
Target Start/End: Original strand, 17358566 - 17358686
Alignment:
Q  80 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 179  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  17358566 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacacta-tttctccatccttgtgtttacattccaaaggctccac 17358664  T
Q  180 aaactcactagtatactccaag 201  Q
    ||||  ||||||||| ||||||    
T  17358665 aaaccaactagtataatccaag 17358686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 80 - 201
Target Start/End: Complemental strand, 30338247 - 30338126
Alignment:
Q  80 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 179  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  30338247 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactaatttctccatccttgtgtttacattccaaaggctccac 30338148  T
Q  180 aaactcactagtatactccaag 201  Q
    | |   ||||||||||||||||    
T  30338147 ataacaactagtatactccaag 30338126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 80 - 227
Target Start/End: Complemental strand, 30341351 - 30341204
Alignment:
Q  80 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 179  Q
    ||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30341351 ctactagagtgtgtgatctacctaatgtgggccataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 30341252  T
Q  180 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 227  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  30341251 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 30341204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 80 - 201
Target Start/End: Original strand, 54271312 - 54271433
Alignment:
Q  80 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 179  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  54271312 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttagactagtttctccatccttgtgtttacattccaaaggctccac 54271411  T
Q  180 aaactcactagtatactccaag 201  Q
    | |   ||||||||||| ||||    
T  54271412 ataacaactagtatacttcaag 54271433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 80 - 170
Target Start/End: Complemental strand, 3476339 - 3476249
Alignment:
Q  80 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaa 170  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  3476339 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaa 3476249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 80 - 170
Target Start/End: Complemental strand, 4117097 - 4117007
Alignment:
Q  80 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaa 170  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  4117097 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttcttcatcattgtgtttacattccaa 4117007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 3482234 - 3482166
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 69  Q
    |||||||||||||| ||||||||||| ||||||||||||||||| | |||||||||||||| |||||||    
T  3482234 aaaccagataagaggattcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 3482166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 231 - 277
Target Start/End: Complemental strand, 3478485 - 3478439
Alignment:
Q  231 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  3478485 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 3478439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 231 - 277
Target Start/End: Complemental strand, 15764557 - 15764511
Alignment:
Q  231 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  15764557 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 15764511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 231 - 277
Target Start/End: Original strand, 17362634 - 17362680
Alignment:
Q  231 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  17362634 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 17362680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 231 - 277
Target Start/End: Original strand, 17367276 - 17367322
Alignment:
Q  231 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  17367276 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 17367322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 231 - 277
Target Start/End: Complemental strand, 20092188 - 20092142
Alignment:
Q  231 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  20092188 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 20092142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 17358111 - 17358179
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 69  Q
    |||||||| ||||| ||||||||||||||||||||||||||||| | | |||||||||||| |||||||    
T  17358111 aaaccagagaagaggattcgattctcagttttggagtgaagaatgcaaatcccgagctctctatttata 17358179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 54270918 - 54270986
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 69  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||| | |||||||||||||| |||||||    
T  54270918 aaaccagagaagaggattcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 54270986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 4117413 - 4117345
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 69  Q
    |||||| | ||||| ||||||||||| ||||||||||||||||| | |||||||||||||| |||||||    
T  4117413 aaaccaaagaagaggattcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 4117345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 30338574 - 30338506
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 69  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||| | | |||||||||||| |||||||    
T  30338574 aaaccagagaagaggattcgattctcggttttggagtgaagaatccaaatcccgagctctctatttata 30338506  T

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Target: chr3; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 34128991 - 34128923
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 69  Q
    |||||||| ||||| ||||||||||||||||||||||||||||| | | |||||| ||||| |||||||    
T  34128991 aaaccagagaagaggattcgattctcagttttggagtgaagaatgcaaatcccgacctctctatttata 34128923  T

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Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 3476767 - 3476699
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 69  Q
    |||||||| ||||| ||||||||||   |||||||||||||||| | |||||||||||||| |||||||    
T  3476767 aaaccagagaagaggattcgattcttgtttttggagtgaagaatcccattcccgagctctctatttata 3476699  T

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Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 10321716 - 10321784
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 69  Q
    ||||| || ||||| |||| |||||| ||||||||||||||||| | | |||||||||||| |||||||    
T  10321716 aaacctgagaagaggattcaattctcggttttggagtgaagaatgcaaatcccgagctctctatttata 10321784  T

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Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 30341771 - 30341720
Alignment:
Q  18 tcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 69  Q
    ||||||||| ||||||||||||||||| | | |||||||||||| |||||||    
T  30341771 tcgattctcggttttggagtgaagaatcccaatcccgagctctctatttata 30341720  T

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Target: scaffold0594 (Bit Score: 99; Significance: 7e-49; HSPs: 2)
Name: scaffold0594
Description:

Target: scaffold0594; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 80 - 227
Target Start/End: Complemental strand, 8681 - 8534
Alignment:
Q  80 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 179  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8681 ctactagagtgtgtgatctacccaatgtgggacataaaattttaaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 8582  T
Q  180 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 227  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  8581 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 8534  T

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Target: scaffold0594; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 9030 - 8962
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 69  Q
    |||| ||| ||||| |||||||||||  |||||||||||||||| | |||||||||||||| |||||||    
T  9030 aaactagagaagaggattcgattctcgtttttggagtgaagaatcccattcccgagctctctatttata 8962  T

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Target: scaffold0166 (Bit Score: 83; Significance: 2e-39; HSPs: 5)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 80 - 227
Target Start/End: Complemental strand, 13133 - 12986
Alignment:
Q  80 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 179  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||| |    
T  13133 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcctc 13034  T
Q  180 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 227  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  13033 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 12986  T

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Target: scaffold0166; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 80 - 170
Target Start/End: Complemental strand, 18590 - 18500
Alignment:
Q  80 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaa 170  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||    
T  18590 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttatactagtttctacatcattgtgtttacattccaa 18500  T

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Target: scaffold0166; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 231 - 277
Target Start/End: Complemental strand, 15279 - 15233
Alignment:
Q  231 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  15279 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 15233  T

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Target: scaffold0166; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 13561 - 13493
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 69  Q
    |||||||| ||||| ||||||||||  ||||||||||||||||| | |||||||||||||| |||||||    
T  13561 aaaccagagaagaggattcgattcttggttttggagtgaagaatcccattcccgagctctctatttata 13493  T

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Target: scaffold0166; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 19014 - 18946
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 69  Q
    |||||||| ||||||||||||||||| |||||||||| |||||||| | ||| |||||||| |||||||    
T  19014 aaaccagagaagagtattcgattctcggttttggagtaaagaataccaatcctgagctctctatttata 18946  T

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Target: scaffold0060 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 80 - 138
Target Start/End: Original strand, 37654 - 37712
Alignment:
Q  80 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttaca 138  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  37654 ctactggagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttaca 37712  T

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Target: scaffold0060; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 37283 - 37361
Alignment:
Q  1 aaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggattt 79  Q
    |||||||| ||||| ||||||||||| |||||||||||||||||   |||||||||||||| |||||||  ||||||||    
T  37283 aaaccagagaagaggattcgattctcggttttggagtgaagaatctcattcccgagctctctatttatagagaggattt 37361  T

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Target: scaffold0165 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0165
Description:

Target: scaffold0165; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 231 - 277
Target Start/End: Original strand, 15542 - 15588
Alignment:
Q  231 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  15542 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 15588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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