View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16795_low_8 (Length: 278)

Name: NF16795_low_8
Description: NF16795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16795_low_8
NF16795_low_8
[»] scaffold0057 (1 HSPs)
scaffold0057 (17-252)||(40804-41039)
[»] chr2 (5 HSPs)
chr2 (46-260)||(32252300-32252514)
chr2 (53-263)||(35922479-35922679)
chr2 (53-146)||(16858604-16858698)
chr2 (81-154)||(23656678-23656751)
chr2 (155-250)||(44586731-44586826)
[»] chr6 (6 HSPs)
chr6 (45-263)||(9190731-9190945)
chr6 (53-263)||(7848192-7848392)
chr6 (49-146)||(10641512-10641612)
chr6 (82-154)||(21083655-21083727)
chr6 (173-263)||(14745399-14745488)
chr6 (82-154)||(21038032-21038104)
[»] chr5 (5 HSPs)
chr5 (56-215)||(24757320-24757469)
chr5 (56-215)||(24615160-24615309)
chr5 (56-215)||(24711558-24711707)
chr5 (56-215)||(24744554-24744703)
chr5 (55-230)||(13935430-13935597)
[»] chr4 (6 HSPs)
chr4 (100-264)||(6821203-6821357)
chr4 (50-136)||(9564155-9564241)
chr4 (77-145)||(11936278-11936346)
chr4 (55-136)||(15873166-15873247)
chr4 (118-230)||(11555762-11555866)
chr4 (90-136)||(12136853-12136899)
[»] chr7 (4 HSPs)
chr7 (49-146)||(22614921-22615021)
chr7 (49-146)||(11655311-11655411)
chr7 (49-144)||(13477664-13477763)
chr7 (194-230)||(11655236-11655272)
[»] scaffold1001 (1 HSPs)
scaffold1001 (49-146)||(1226-1326)
[»] chr3 (5 HSPs)
chr3 (81-154)||(16362890-16362963)
chr3 (81-154)||(21974983-21975056)
chr3 (81-154)||(21997414-21997487)
chr3 (85-136)||(22159558-22159609)
chr3 (82-154)||(13927154-13927226)
[»] scaffold0737 (1 HSPs)
scaffold0737 (81-136)||(3930-3985)
[»] chr1 (1 HSPs)
chr1 (100-154)||(15541198-15541252)
[»] scaffold0385 (1 HSPs)
scaffold0385 (81-154)||(13972-14045)


Alignment Details
Target: scaffold0057 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 252
Target Start/End: Complemental strand, 41039 - 40804
Alignment:
Q  17 gaataataaaataaaatagaggggaaacaatgtttatctatgatgatgaggagagtggtaatattttgtgtgtttgcaatagtgtcgtgcattttagggg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  41039 gaataataaaataaaatagaggggaaacaatgtttatctatgatgatgaggagagtggtaatattttgtgtgtttgcaatagtgtcgtgcattttagagg 40940  T
Q  117 aagtcttgcattaatatgtgggttatgtgactatgtgtttaagtgtatatgtccaatacttgttgaatatacttcattgtgtccatatagagtctagagc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  40939 aagtcttgcattaatatgtgggttatgtgactatgtgtttaagtgtatatgtccaatacttgttgaatatatttcattgtgttcatatagagtctagagc 40840  T
Q  217 atggtgtcttgcatgatgtgggagaaaagtccagca 252  Q
    ||||||||||||||||||||||||||||||||||||    
T  40839 atggtgtcttgcatgatgtgggagaaaagtccagca 40804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 131; Significance: 5e-68; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 46 - 260
Target Start/End: Original strand, 32252300 - 32252514
Alignment:
Q  46 atgtttatctatgatgatgaggagagtggtaatattttgtgtgtttgcaatagtgtcgtgcattttaggggaagtcttgcattaatatgtgggttatgtg 145  Q
    |||||||| |||||||||||| ||||| ||||| ||||||||| |||||| || || |||||||||||||| |||||||||||||||||||| |||||||    
T  32252300 atgtttatatatgatgatgagaagagttgtaatgttttgtgtgcttgcaacagagttgtgcattttagggggagtcttgcattaatatgtggattatgtg 32252399  T
Q  146 actatgtgtttaagtgtatatgtccaatacttgttgaatatacttcattgtgtccatatagagtctagagcatggtgtcttgcatgatgtgggagaaaag 245  Q
    |||||||| |||||||||||||| ||||||||  | ||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32252400 actatgtgcttaagtgtatatgttcaatacttaatcaatttatttccttgtgtccatatagagtctagagcatggtgtcttgcatgatgtgggagaaaag 32252499  T
Q  246 tccagcaccatactt 260  Q
    || || | |||||||    
T  32252500 tctagtaacatactt 32252514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 53 - 263
Target Start/End: Original strand, 35922479 - 35922679
Alignment:
Q  53 tctatgatgatgaggagagtggtaatattttgtgtgtttgcaatagtgtcgtgcattttaggggaagtcttgcattaatatgtgggttatgtgactatgt 152  Q
    ||||||||||||| | ||||||| ||  |||||||| ||||| ||| ||||||||||||||| | ||||||||||| ||| ||||  |||||||||||      
T  35922479 tctatgatgatgatgtgagtggtgatgatttgtgtgcttgcattagagtcgtgcattttaggaggagtcttgcattcataggtggaatatgtgactat-- 35922576  T
Q  153 gtttaagtgtatatgtccaatacttgttgaatatacttcattgtgtccatatagagtctagagcatggtgtcttgcatgatgtgggagaaaagtccagca 252  Q
          |||||||||   |||||||||  ||| || ||| ||| || |||||||||||||||||||   ||||||||| ||||||||||||||||||| |    
T  35922577 ------gtgtatatgcgtaatacttgtcaaatttaattccttgcgttcatatagagtctagagcat-aagtcttgcat-atgtgggagaaaagtccagta 35922668  T
Q  253 ccatacttctg 263  Q
     ||||||||||    
T  35922669 acatacttctg 35922679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 146
Target Start/End: Complemental strand, 16858698 - 16858604
Alignment:
Q  53 tctatgatgatgaggagagtggtaatattttgtgtgtttgcaatagtgtcgtgcattttaggg-gaagtcttgcattaatatgtgggttatgtga 146  Q
    ||||||||||||| |||||| || ||  |||||||||||| | ||| || ||||||||||||| | |||||||||||||||||||| ||||||||    
T  16858698 tctatgatgatgatgagagtagtgatgatttgtgtgtttgtattagagttgtgcattttagggaggagtcttgcattaatatgtggattatgtga 16858604  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 154
Target Start/End: Original strand, 23656678 - 23656751
Alignment:
Q  81 tttgtgtgtttgcaatagtgtcgtgcattttaggggaagtcttgcattaatatgtgggttatgtgactatgtgt 154  Q
    |||||||||||||| ||| || ||||||||||| || |||||||||||||||||||  |||| ||| |||||||    
T  23656678 tttgtgtgtttgcattagagttgtgcattttagtgggagtcttgcattaatatgtgaattatttgaatatgtgt 23656751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 250
Target Start/End: Original strand, 44586731 - 44586826
Alignment:
Q  155 ttaagtgtatatgtccaatacttgttgaatatacttcattgtgtccatatagagtctagagcatggtgtcttgca-tgatgtgggagaaaagtccag 250  Q
    ||||||| ||||||  ||||||||| |||| || ||| ||  || ||||||||||||||||||||||||| |||| ||||||  |||||||||||||    
T  44586731 ttaagtggatatgtgtaatacttgtcgaatttaattctttacgttcatatagagtctagagcatggtgtcgtgcattgatgt-cgagaaaagtccag 44586826  T

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Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 45 - 263
Target Start/End: Complemental strand, 9190945 - 9190731
Alignment:
Q  45 aatgtttatctatgatgatgaggagagtggtaatattttgtgtgtttgcaatagtgtcgtgcattttaggggaagtcttgcattaatatgtgggttatgt 144  Q
    |||||||||||||||||||||| |||||| |||| ||| ||||||||||||||| ||||||||||||| ||| |||||||||||||||||||| ||||||    
T  9190945 aatgtttatctatgatgatgagtagagtgataatgtttcgtgtgtttgcaatagagtcgtgcattttaaggggagtcttgcattaatatgtggattatgt 9190846  T
Q  145 gactatgtgtttaagtgtatatgtccaatacttgttgaatatacttcattgtgtccatatagagtctagagcatggtgtcttgcatgatgtgggagaaaa 244  Q
    |   |||||||||||||||||||| ||||||||| ||||| || ||| ||||| ||||||||||| || | |||||||||||||||||||||||||||||    
T  9190845 g---atgtgtttaagtgtatatgtgcaatacttgctgaatttatttccttgtg-ccatatagagtttataacatggtgtcttgcatgatgtgggagaaaa 9190750  T
Q  245 gtccagcaccatacttctg 263  Q
    || ||  | ||||||||||    
T  9190749 gttcactaacatacttctg 9190731  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 53 - 263
Target Start/End: Complemental strand, 7848392 - 7848192
Alignment:
Q  53 tctatgatgatgaggagagtggtaatattttgtgtgtttgcaatagtgtcgtgcattttaggggaagtcttgcattaatatgtgggttatgtgactatgt 152  Q
    ||||||||||||| |  |||||| ||  |||||||| ||| | ||| ||||||||||||||| | | ||||||||| ||| ||||  |||||||||||      
T  7848392 tctatgatgatgatgtcagtggtgatgatttgtgtgcttgtattagagtcgtgcattttaggaggactcttgcattcataggtggaatatgtgactat-- 7848295  T
Q  153 gtttaagtgtatatgtccaatacttgttgaatatacttcattgtgtccatatagagtctagagcatggtgtcttgcatgatgtgggagaaaagtccagca 252  Q
          ||||||||||  ||||||||| |||| || ||| ||| || |||||||||||||||||||   ||||||||| ||||||||||||||| ||  |    
T  7848294 ------gtgtatatgtgtaatacttgtcgaatttaattccttgcgttcatatagagtctagagcat-aagtcttgcat-atgtgggagaaaagttcacta 7848203  T
Q  253 ccatacttctg 263  Q
     ||||||||||    
T  7848202 acatacttctg 7848192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 146
Target Start/End: Original strand, 10641512 - 10641612
Alignment:
Q  49 tttatctatgatgatgaggagagtggtaata---ttttgtgtgtttgcaatagtgtcgtgcattttaggggaagtcttgcattaatatgtgggttatgtg 145  Q
    ||||||||||||| ||| ||||||||| ||    ||||||||| ||||| |||  ||||||||||||||| || |||||||||| ||||||| |||||||    
T  10641512 tttatctatgatgctgatgagagtggtgatgatgttttgtgtgcttgcattagattcgtgcattttagggaaaatcttgcattagtatgtggattatgtg 10641611  T
Q  146 a 146  Q
    |    
T  10641612 a 10641612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 21083655 - 21083727
Alignment:
Q  82 ttgtgtgtttgcaatagtgtcgtgcattttaggggaagtcttgcattaatatgtgggttatgtgactatgtgt 154  Q
    ||||||| ||||| ||| |||||||||||||| | ||||||||||||||||||||  |||| ||| |||||||    
T  21083655 ttgtgtgcttgcattagagtcgtgcattttagtgaaagtcttgcattaatatgtgaattatttgaatatgtgt 21083727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 263
Target Start/End: Complemental strand, 14745488 - 14745399
Alignment:
Q  173 tacttgttgaatatacttcattgtgtccatatagagtctagagcatggtgtcttgcatgatgtgggagaaaagtccagcaccatacttctg 263  Q
    ||||||||||| ||| ||   || ||||||||||||||||||||||  |||||||||| ||| ||||||||||||||| |  |||||||||    
T  14745488 tacttgttgaaaataatttcatgcgtccatatagagtctagagcataatgtcttgcat-atgcgggagaaaagtccagtaatatacttctg 14745399  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 21038032 - 21038104
Alignment:
Q  82 ttgtgtgtttgcaatagtgtcgtgcattttaggggaagtcttgcattaatatgtgggttatgtgactatgtgt 154  Q
    ||||||| ||||| ||| |||||||||||||| |  |||||||||||||||||||  |||| ||| |||||||    
T  21038032 ttgtgtgcttgcattagagtcgtgcattttagtgagagtcttgcattaatatgtgaattatttgaatatgtgt 21038104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 56 - 215
Target Start/End: Complemental strand, 24757469 - 24757320
Alignment:
Q  56 atgatgatgaggagagtggtaatattttgtgtgtttgcaatagtgtcgtgcattttaggggaagtcttgcattaatatgtgggttatgtgactatgtgtt 155  Q
    |||||| ||| | |||||||||| ||||||||  ||||||||| ||||||||||||||||  |||||||||||||||||||          ||||||| |    
T  24757469 atgatggtgaagggagtggtaatgttttgtgttcttgcaatagagtcgtgcattttagggagagtcttgcattaatatgtg----------ctatgtggt 24757380  T
Q  156 taagtgtatatgtccaatacttgttgaatatacttcattgtgtccatatagagtctagag 215  Q
    ||||||||||||| ||||||||||||||| ||  || ||||| ||||||| |||||||||    
T  24757379 taagtgtatatgtacaatacttgttgaatttatgtccttgtggccatataaagtctagag 24757320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 215
Target Start/End: Complemental strand, 24615309 - 24615160
Alignment:
Q  56 atgatgatgaggagagtggtaatattttgtgtgtttgcaatagtgtcgtgcattttaggggaagtcttgcattaatatgtgggttatgtgactatgtgtt 155  Q
    |||||| ||| | |||||||||| ||||||||  ||||||||| |||||||||||||| |  |||||||||||||||||||          ||||||| |    
T  24615309 atgatggtgaagggagtggtaatgttttgtgttcttgcaatagagtcgtgcattttagagagagtcttgcattaatatgtg----------ctatgtggt 24615220  T
Q  156 taagtgtatatgtccaatacttgttgaatatacttcattgtgtccatatagagtctagag 215  Q
    ||||||||||||| ||||||||| ||||| ||  || ||||| |||| || |||||||||    
T  24615219 taagtgtatatgtacaatacttgctgaatttatgtccttgtggccatttaaagtctagag 24615160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 215
Target Start/End: Complemental strand, 24711707 - 24711558
Alignment:
Q  56 atgatgatgaggagagtggtaatattttgtgtgtttgcaatagtgtcgtgcattttaggggaagtcttgcattaatatgtgggttatgtgactatgtgtt 155  Q
    |||||| ||| | |||||||||| ||||||||  ||||||||| |||||||||||||| |  |||||||||||||||||||          ||||||| |    
T  24711707 atgatggtgaagggagtggtaatgttttgtgttcttgcaatagagtcgtgcattttagagagagtcttgcattaatatgtg----------ctatgtggt 24711618  T
Q  156 taagtgtatatgtccaatacttgttgaatatacttcattgtgtccatatagagtctagag 215  Q
    ||||||||||||| ||||||||| ||||| ||  || ||||| |||| || |||||||||    
T  24711617 taagtgtatatgtacaatacttgctgaatttatgtccttgtggccatttaaagtctagag 24711558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 215
Target Start/End: Complemental strand, 24744703 - 24744554
Alignment:
Q  56 atgatgatgaggagagtggtaatattttgtgtgtttgcaatagtgtcgtgcattttaggggaagtcttgcattaatatgtgggttatgtgactatgtgtt 155  Q
    |||||| ||| | |||||||||| ||||||||  ||||||||| |||||||||||||| |  |||||||||||||||||||          ||||||| |    
T  24744703 atgatggtgaagggagtggtaatgttttgtgttcttgcaatagagtcgtgcattttagagagagtcttgcattaatatgtg----------ctatgtggt 24744614  T
Q  156 taagtgtatatgtccaatacttgttgaatatacttcattgtgtccatatagagtctagag 215  Q
    ||||||||||||| ||||||||| ||||| ||  || ||||| |||| || |||||||||    
T  24744613 taagtgtatatgtacaatacttgctgaatttatgtccttgtggccatttaaagtctagag 24744554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 230
Target Start/End: Complemental strand, 13935597 - 13935430
Alignment:
Q  55 tatgatgatgaggagagtggtaatattttgtgtgtttgcaatagtgtcgtgcattttaggggaagtcttgcattaatatgtgggttatgtgactatgtgt 154  Q
    ||||||||||| |||||||||  |  |||||||| ||||  ||  || ||| ||||||||| |||| |||||||||||||||| |||||||||| |||||    
T  13935597 tatgatgatgatgagagtggtggtgatttgtgtgcttgccttacagttgtggattttagggaaagttttgcattaatatgtggattatgtgactttgtgt 13935498  T
Q  155 ttaagtgtatatgtccaatacttgttgaatatacttcattgtgtccatatagagtctagagcatggtgtcttgcat 230  Q
     ||  |||||        ||||||| |||| || ||| |||||| |||||||||||||||||||| |||| |||||    
T  13935497 atacatgtat--------tacttgtcgaatttaattctttgtgttcatatagagtctagagcatgatgtcgtgcat 13935430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 100 - 264
Target Start/End: Complemental strand, 6821357 - 6821203
Alignment:
Q  100 gtcgtgcattttaggggaagtcttgcattaatatgtgggttatgtgactatgtgtttaagtgtatatgtccaatacttgttgaatatacttcattgtgtc 199  Q
    ||||||||||||||||| ||||||||||| ||| ||||  ||||||||||||||| || |||||        |||||||| |||| || ||| ||| ||     
T  6821357 gtcgtgcattttagggggagtcttgcattcataggtggaatatgtgactatgtgtatatgtgta--------atacttgtcgaatttaattccttgcgtt 6821266  T
Q  200 catatagagtctagagcatggtgtcttgcatgatgtgggagaaaagtccagcaccatacttctga 264  Q
    |||||||||||||||||||   ||||||||| ||||||||||||| ||||| | |||||||||||    
T  6821265 catatagagtctagagcat-aagtcttgcat-atgtgggagaaaattccagtaacatacttctga 6821203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 50 - 136
Target Start/End: Complemental strand, 9564241 - 9564155
Alignment:
Q  50 ttatctatgatgatgaggagagtggtaatattttgtgtgtttgcaatagtgtcgtgcattttaggggaagtcttgcattaatatgtg 136  Q
    |||||||||||||||| |||||| || ||  |||||||||||||| ||| ||||||||| ||||||| |||||| ||||||||||||    
T  9564241 ttatctatgatgatgatgagagttgtgatgatttgtgtgtttgcattagagtcgtgcatattagggggagtcttacattaatatgtg 9564155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 77 - 145
Target Start/End: Complemental strand, 11936346 - 11936278
Alignment:
Q  77 atattttgtgtgtttgcaatagtgtcgtgcattttaggggaagtcttgcattaatatgtgggttatgtg 145  Q
    |||||||||||| ||||| ||| ||||||||| |||||||  ||||| ||||||||||||| |||||||    
T  11936346 atattttgtgtgcttgcattagagtcgtgcatcttagggggtgtcttacattaatatgtggattatgtg 11936278  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 136
Target Start/End: Original strand, 15873166 - 15873247
Alignment:
Q  55 tatgatgatgaggagagtggtaatattttgtgtgtttgcaatagtgtcgtgcattttaggggaagtcttgcattaatatgtg 136  Q
    ||||||||||| |||  || ||||  |||||||| ||||| ||| |||||||||||||| |  |||||||||||||||||||    
T  15873166 tatgatgatgatgagtatgttaatgatttgtgtgcttgcattagagtcgtgcattttagtgagagtcttgcattaatatgtg 15873247  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 230
Target Start/End: Complemental strand, 11555866 - 11555762
Alignment:
Q  118 agtcttgcattaatatgtgggttatgtgactatgtgtttaagtgtatatgtccaatacttgttgaatatacttcattgtgtccatatagagtctagagca 217  Q
    |||| ||||||||||||||||||||||||        ||||||||||| ||  ||||||||| |||| || ||| ||  || ||||| ||||||||||||    
T  11555866 agtcgtgcattaatatgtgggttatgtga--------ttaagtgtatacgtgtaatacttgtcgaatttaattctttacgttcatattgagtctagagca 11555775  T
Q  218 tggtgtcttgcat 230  Q
    ||||||| |||||    
T  11555774 tggtgtcgtgcat 11555762  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 136
Target Start/End: Complemental strand, 12136899 - 12136853
Alignment:
Q  90 ttgcaatagtgtcgtgcattttaggggaagtcttgcattaatatgtg 136  Q
    ||||| ||| |||||||||||||| || |||||||||||||||||||    
T  12136899 ttgcattagagtcgtgcattttagtgggagtcttgcattaatatgtg 12136853  T

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Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 49 - 146
Target Start/End: Original strand, 22614921 - 22615021
Alignment:
Q  49 tttatctatgatgatgaggagagtggtaata---ttttgtgtgtttgcaatagtgtcgtgcattttaggggaagtcttgcattaatatgtgggttatgtg 145  Q
    ||||||||||||||||| ||||||||| ||    ||||||||| ||||| ||| ||||||||||||| ||||| |||||||||||||||||  |||||||    
T  22614921 tttatctatgatgatgatgagagtggtgatgatgttttgtgtgcttgcattagagtcgtgcattttatgggaaatcttgcattaatatgtgaattatgtg 22615020  T
Q  146 a 146  Q
    |    
T  22615021 a 22615021  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 146
Target Start/End: Complemental strand, 11655411 - 11655311
Alignment:
Q  49 tttatctatgatgatgaggagagtggtaata---ttttgtgtgtttgcaatagtgtcgtgcattttaggggaagtcttgcattaatatgtgggttatgtg 145  Q
    ||||||||||||||||| ||||||||| ||    |||| |||| ||||| ||| ||||||||||||| || || |||||||||| ||||||  |||||||    
T  11655411 tttatctatgatgatgatgagagtggtgatgatgttttttgtgcttgcattagagtcgtgcattttatggaaaatcttgcattagtatgtgaattatgtg 11655312  T
Q  146 a 146  Q
    |    
T  11655311 a 11655311  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 144
Target Start/End: Original strand, 13477664 - 13477763
Alignment:
Q  49 tttatctatgatgatgaggagagtggtaa---tattttgtgtgtttgcaatagtgtcgtgcattttaggggaagtcttgca-ttaatatgtgggttatgt 144  Q
    ||||||||||||||||| ||||||||| |   | ||||||||| |||||  || ||||| ||||||||||| |  |||||| ||||||||||||||||||    
T  13477664 tttatctatgatgatgatgagagtggtgatggtgttttgtgtgcttgcatcagagtcgttcattttagggggatacttgcatttaatatgtgggttatgt 13477763  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 11655272 - 11655236
Alignment:
Q  194 tgtgtccatatagagtctagagcatggtgtcttgcat 230  Q
    ||||||||| |||||||||||||||| ||||||||||    
T  11655272 tgtgtccatgtagagtctagagcatgatgtcttgcat 11655236  T

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Target: scaffold1001 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1001
Description:

Target: scaffold1001; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 146
Target Start/End: Complemental strand, 1326 - 1226
Alignment:
Q  49 tttatctatgatgatgaggagagtggtaatatt---ttgtgtgtttgcaatagtgtcgtgcattttaggggaagtcttgcattaatatgtgggttatgtg 145  Q
    ||||||||||||||||| ||||||||| || ||   ||||||| ||||| ||  ||| ||||||||||||||| ||||| |||| | ||||| |||||||    
T  1326 tttatctatgatgatgatgagagtggtgatgttgttttgtgtgcttgcattatagtcatgcattttaggggaaatcttgtattagtctgtggattatgtg 1227  T
Q  146 a 146  Q
    |    
T  1226 a 1226  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 154
Target Start/End: Original strand, 16362890 - 16362963
Alignment:
Q  81 tttgtgtgtttgcaatagtgtcgtgcattttaggggaagtcttgcattaatatgtgggttatgtgactatgtgt 154  Q
    |||||||| ||||| ||| |||||||||||||| |  |||||||||||||||||||  |||| ||| |||||||    
T  16362890 tttgtgtgcttgcattagagtcgtgcattttagtgagagtcttgcattaatatgtgaattatttgaatatgtgt 16362963  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 154
Target Start/End: Complemental strand, 21975056 - 21974983
Alignment:
Q  81 tttgtgtgtttgcaatagtgtcgtgcattttaggggaagtcttgcattaatatgtgggttatgtgactatgtgt 154  Q
    |||||||| ||||| ||| |||||||||||||| |  |||||||||||||||||||  |||| ||| |||||||    
T  21975056 tttgtgtgcttgcattagagtcgtgcattttagtgagagtcttgcattaatatgtgaattatttgaatatgtgt 21974983  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 154
Target Start/End: Complemental strand, 21997487 - 21997414
Alignment:
Q  81 tttgtgtgtttgcaatagtgtcgtgcattttaggggaagtcttgcattaatatgtgggttatgtgactatgtgt 154  Q
    |||||||| ||||| ||| |||||||||||||| |  |||||||||||||||||||  |||| ||| |||||||    
T  21997487 tttgtgtgcttgcattagagtcgtgcattttagtgagagtcttgcattaatatgtgaattatttgaatatgtgt 21997414  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 136
Target Start/End: Complemental strand, 22159609 - 22159558
Alignment:
Q  85 tgtgtttgcaatagtgtcgtgcattttaggggaagtcttgcattaatatgtg 136  Q
    |||||||||| ||| |||||||||||||| |  |||||||||||||||||||    
T  22159609 tgtgtttgcattagagtcgtgcattttagtgagagtcttgcattaatatgtg 22159558  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 13927154 - 13927226
Alignment:
Q  82 ttgtgtgtttgcaatagtgtcgtgcattttaggggaagtcttgcattaatatgtgggttatgtgactatgtgt 154  Q
    ||||||| ||||| ||| || ||||||||||| || ||||||||| |||||||||  |||| ||| |||||||    
T  13927154 ttgtgtgcttgcattagagttgtgcattttagtgggagtcttgcactaatatgtgaattatttgaatatgtgt 13927226  T

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Target: scaffold0737 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0737
Description:

Target: scaffold0737; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 81 - 136
Target Start/End: Original strand, 3930 - 3985
Alignment:
Q  81 tttgtgtgtttgcaatagtgtcgtgcattttaggggaagtcttgcattaatatgtg 136  Q
    |||||||| ||||| ||| |||||||||||||| || |||||| ||||||||||||    
T  3930 tttgtgtgcttgcattagagtcgtgcattttagtgggagtcttacattaatatgtg 3985  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 154
Target Start/End: Complemental strand, 15541252 - 15541198
Alignment:
Q  100 gtcgtgcattttaggggaagtcttgcattaatatgtgggttatgtgactatgtgt 154  Q
    ||||||||||||||||| | ||||  |||||||||||| ||||||||||| ||||    
T  15541252 gtcgtgcattttagggggactcttcaattaatatgtggattatgtgactaggtgt 15541198  T

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Target: scaffold0385 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 154
Target Start/End: Complemental strand, 14045 - 13972
Alignment:
Q  81 tttgtgtgtttgcaatagtgtcgtgcattttaggggaagtcttgcattaatatgtgggttatgtgactatgtgt 154  Q
    |||||||| ||||| ||| |||||||||||||| |  |||||| ||||||||||||  |||| ||| |||||||    
T  14045 tttgtgtgcttgcattagagtcgtgcattttagtgagagtcttccattaatatgtgaattatttgaatatgtgt 13972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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