View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16796_high_11 (Length: 461)
Name: NF16796_high_11
Description: NF16796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16796_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 448
Target Start/End: Complemental strand, 11359745 - 11359318
Alignment:
| Q |
18 |
acttttgccaccgcggtggtggtttgaatgacaactgcaaggttgttaattcctgcaacggattggtatgctttattttctgttctgataatatggggta |
117 |
Q |
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| T |
11359745 |
acttttgctacgacggtggtggtttgaatgacaactgcaaggttgttatttcctgcaacggattgttatgctttattttctgttctgataataaggagta |
11359646 |
T |
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| Q |
118 |
tcataagtactggttccgtatattgaaccctgccacgggaacaagatctaaagcatttgggacatatcatgactataaccttcagctatacggtttgaag |
217 |
Q |
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| T |
11359645 |
tcataattattggtttcgtatatggaaccctgctacaggaacaagatcgaaagcattagggacaaatcatgactataaccttcagctacgcagtttgagg |
11359546 |
T |
|
| Q |
218 |
ttcagttttggttctgaagcatttgtgagttgtgatcatgactataaccaacaaaggtctctattaggctctttgaagttcacttttggttgtgacattt |
317 |
Q |
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| T |
11359545 |
ttcaattttggttctgaagcatttgggagttgttattatgact---accgtaggcgatatctattaggttgtttgaagttcacttttggttgtggcattt |
11359449 |
T |
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| Q |
318 |
taactggaagttacaaagtcgtggagttttgcgcaatacaagacgaggaaaacaacaatggtctatggagaagtcatgtcagagttctcagtttgagtga |
417 |
Q |
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| T |
11359448 |
taagtggaacttacaagaccgtggagtttcgtgccaaaggagatgaagaaaacaaatatggtccatggagaagtcaggtcagaattctcagtttgagcga |
11359349 |
T |
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| Q |
418 |
tgattgttggagaaatatgaacagttttcct |
448 |
Q |
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| T |
11359348 |
tgattgttggagaaatatcgacagttttcct |
11359318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 340 - 451
Target Start/End: Complemental strand, 11339024 - 11338911
Alignment:
| Q |
340 |
ggagttttgcgcaatacaagacgaggaaaacaa--caatggtctatggagaagtcatgtcagagttctcagtttgagtgatgattgttggagaaatatga |
437 |
Q |
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| T |
11339024 |
ggagtttcgcgcaatacaagacgaggaaaacaaaacaatggtctatggagaagtcatgtcagagttctcagtttgagtgatgattgttggagaaatatta |
11338925 |
T |
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| Q |
438 |
acagttttcctttg |
451 |
Q |
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| T |
11338924 |
acagttttcctttg |
11338911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 275 - 451
Target Start/End: Complemental strand, 11345610 - 11345437
Alignment:
| Q |
275 |
tctctattaggctctttgaagttcacttttggttgtgacattttaactggaagttacaaagtcgtggagttttgcgcaatacaagacgaggaaaacaaca |
374 |
Q |
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| T |
11345610 |
tctctattaggatgtttgaatttcacttttggttgtgacattttaaccgaaacttacaaggtggtagagttttgcgcagaacgagatgaaggaaacaact |
11345511 |
T |
|
| Q |
375 |
atggtctatggagaagtcatgtcagagttctcagtttgagtgatgattgttggagaaatatgaacagttttcctttg |
451 |
Q |
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| T |
11345510 |
ct---ccatggagaagtcgggtcagagttctcagtttgagtgatgattgttggagaaatattaacagttttcctttg |
11345437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 286 - 440
Target Start/End: Original strand, 23840265 - 23840416
Alignment:
| Q |
286 |
ctctttgaagttcacttttggttgtgacattttaactggaagttacaaagtcgtggagttttgcgcaatacaagacgaggaaaacaacaatggtctatgg |
385 |
Q |
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| T |
23840265 |
ctctttaatgttcacttttggctgtgacattttaactggaacttacaatgtgttggagttt--cacaa-agaacaagataaagacaaccatggtctattg |
23840361 |
T |
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| Q |
386 |
agaagtcatgtcagagttctcagtttgagtgatgattgttggagaaatatgaaca |
440 |
Q |
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| T |
23840362 |
aaaagtcaggtcagagttcccaatttggatgatgattgttggagaaatatcaaca |
23840416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 295 - 434
Target Start/End: Complemental strand, 23847651 - 23847515
Alignment:
| Q |
295 |
gttcacttttggttgtgacattttaactggaagttacaaagtcgtggagttttgcgcaatacaagacgaggaaaacaacaatggtctatggagaagtcat |
394 |
Q |
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| T |
23847651 |
gttcacttttggttgtgacattttaactggaacttacaaggtggtggagtttcgtg-aagaga--aagataaagacaaccatggtctattgaaaagtcag |
23847555 |
T |
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| Q |
395 |
gtcagagttctcagtttgagtgatgattgttggagaaata |
434 |
Q |
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| T |
23847554 |
gtcagagttctcaatttagatgatgattgctggagaaata |
23847515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 382 - 435
Target Start/End: Complemental strand, 19747111 - 19747058
Alignment:
| Q |
382 |
atggagaagtcatgtcagagttctcagtttgagtgatgattgttggagaaatat |
435 |
Q |
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| T |
19747111 |
atggagaagtcaggtcagaattttcagtttaagtgataattgttggagaaatat |
19747058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 346
Target Start/End: Original strand, 24030850 - 24030896
Alignment:
| Q |
300 |
cttttggttgtgacattttaactggaagttacaaagtcgtggagttt |
346 |
Q |
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| T |
24030850 |
cttttggttgtgacattttaactggaacttacaaggtgctggagttt |
24030896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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