View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16796_high_12 (Length: 442)
Name: NF16796_high_12
Description: NF16796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16796_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 15 - 426
Target Start/End: Original strand, 39091329 - 39091731
Alignment:
| Q |
15 |
cacagaagcaactagtggcttttgagaaagtttatgttcctgctaaggctcagcaacgagtgaggatcaatattcatgtatgtaagcttttgagtgtggt |
114 |
Q |
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| T |
39091329 |
cacagaagcaactagtggcttttgagaaagtttatgttcctgctaaggctcagcaacgagtgaggatcaatattcatgtatgtaagcttttgagtgtggt |
39091428 |
T |
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| Q |
115 |
tgataagtctgggactaggagaattccaatgggagcacatagtattcacattggtgatgttaaacattttgtatcacttcaagaacaaaaactagggatc |
214 |
Q |
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| T |
39091429 |
tgataagtctgggactaggagaattccaatgggagcacatagtattcacattggtgatgttaaacattttgtatcacttcaagaacaaaaactagggatc |
39091528 |
T |
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| Q |
215 |
accaagacctgaattcnnnnnnnatggggacgcatttagaatgtcttctaattgatctcaatatatactactaaggtaagtgtataatagatcaatagta |
314 |
Q |
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| T |
39091529 |
atcaagacctgaatt-tttttttatggggacgcatttagaatgtcttctaattgatctcaatatatactactaaggtaagtgtataatagatcaatagta |
39091627 |
T |
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| Q |
315 |
tgccagggattacnnnnnnnnnnnnnnnnnnngtttccactgattgtgtggggtttggtcatatccaaagacagaacatattatattgattcatcaatga |
414 |
Q |
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| T |
39091628 |
tgccagggattac--------atatatatatagtttccactgattgtgtggggtttggtcatatccaaagacagaacatattatattgattcatcaatga |
39091719 |
T |
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| Q |
415 |
caatcaaataat |
426 |
Q |
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| T |
39091720 |
caatcaaataat |
39091731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 26 - 182
Target Start/End: Complemental strand, 44714428 - 44714272
Alignment:
| Q |
26 |
ctagtggcttttgagaaagtttatgttcctgctaaggctcagcaacgagtgaggatcaatattcatgtatgtaagcttttgagtgtggttgataagtctg |
125 |
Q |
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| T |
44714428 |
ctagttgcttttgagaaagttcatgttcctgccaagactaagcaaagggttagagtaaatattcatgtttgtaagttgcttagtgtagttgataaatctg |
44714329 |
T |
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| Q |
126 |
ggactaggagaattccaatgggagcacatagtattcacattggtgatgttaaacatt |
182 |
Q |
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| T |
44714328 |
ggattaggagaattccaatgggagaacatagtcttcacattggtgatgttaaacatt |
44714272 |
T |
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