View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16796_high_13 (Length: 403)
Name: NF16796_high_13
Description: NF16796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16796_high_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 394
Target Start/End: Original strand, 31292161 - 31292538
Alignment:
| Q |
18 |
ccttctaagtgtgataggctgggtgagggtcattctctatcttaattaactcattaagtttcctattgaggatataacattggacatcggccatgttcgt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||| |||||| |
|
|
| T |
31292161 |
ccttctaagtgtgataggctgggtgagggtcattctctatcttaattaactcattaagtttccttttgaggatataacatcagacgtcggccaagttcgt |
31292260 |
T |
|
| Q |
118 |
cttccatagattgttaaggttgtgacagagtttccaaaggcttgtgagattttaagttgcacaaatccctctgaaaatcaattatttccatggatctcat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| | |
|
|
| T |
31292261 |
cttccatagattgttaaggttgtgacagagttcccaaaggcttgtgagattttaagttgcacaaatccctctgaaaattaattatctccatggatctcgt |
31292360 |
T |
|
| Q |
218 |
cgtgaatactcaggctcaacatgaatctgctaggttatgacactccaatcaccgagttcagcatgtggagttgctatgatggatctagctatcttggaag |
317 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||| |||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
31292361 |
cgtgaatacttaggctcaacatgaatttgctagattatgacactccaatcgtcgagttcaacatgtggagttgctatgatagatctagctattttggaag |
31292460 |
T |
|
| Q |
318 |
atttcacacc-ttttccaactattattttggtaagccgagggaacgaagttacaagaacttagttcccataaacgttg |
394 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||| ||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
31292461 |
atttcacacctttttccaactattattttggtaggccaagggaacaaagttacaagaacttagtttccataaacgttg |
31292538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University