View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16796_high_18 (Length: 355)
Name: NF16796_high_18
Description: NF16796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16796_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 18 - 344
Target Start/End: Original strand, 2285658 - 2285984
Alignment:
| Q |
18 |
aaaagtgattaaaggaatgtattattcaataacttttatggtggcacgtacatgtgcacaagaagaaagaattaatatatctgttgctcctgattttggt |
117 |
Q |
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| T |
2285658 |
aaaagtgattaaaggaatgtattattcaataacttttatggtggcacgtacatgtgcacaagaagaaagaattaatatatctgttgctcctgattttggt |
2285757 |
T |
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| Q |
118 |
gttattcctatacaaacattgtatacaagtagtggttgggatccaattgcttatggttttaaagctgaatatgatgttgtggaaatggttattcataatc |
217 |
Q |
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| T |
2285758 |
gttattcctatacaaacattgtatacaagtagtggttgggatccaattgcttatggttttaaagctgaatatgatgttgtggaaatggttattcataatc |
2285857 |
T |
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| Q |
218 |
ctggcgttgaagaagatcctgcttgtggtcctcttattgattctgttgctcttaggactctctatcctcctaaagcttctaatagtaagtgaaaactttc |
317 |
Q |
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| T |
2285858 |
ctggtgttgaagaagatcctgcttgtggtcctcttattgattctgttgctcttaggactctctatcctcctaaagcttctaatagtaagtgaaaactttc |
2285957 |
T |
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| Q |
318 |
tttctttttctatataaatctcttcat |
344 |
Q |
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| T |
2285958 |
tttctttttctatataaatctcttcat |
2285984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 229 - 341
Target Start/End: Original strand, 2289652 - 2289761
Alignment:
| Q |
229 |
gaagatcctgcttgtggtcctcttattgattctgttgctcttaggactctctatcctcctaaagcttctaatagtaagtgaaaactttctttctttttct |
328 |
Q |
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| T |
2289652 |
gaagatcctgcttgtggacttcttaatgattctgttgctcttagga--ctctatcctcctaaagcttctaatagtaagt-tctactttctttctttttct |
2289748 |
T |
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| Q |
329 |
atataaatctctt |
341 |
Q |
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| T |
2289749 |
acataaatctctt |
2289761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 44409144 - 44409193
Alignment:
| Q |
218 |
ctggcgttgaagaagatcctgcttgtggtcctcttattgattctgttgct |
267 |
Q |
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| T |
44409144 |
ctggtgttgaagatgatccagcttgtggtccacttattgattctgttgct |
44409193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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