View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16796_high_2 (Length: 839)
Name: NF16796_high_2
Description: NF16796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16796_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 778; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 778; E-Value: 0
Query Start/End: Original strand, 18 - 823
Target Start/End: Complemental strand, 46875490 - 46874686
Alignment:
| Q |
18 |
gacaaggggtagccgtgaatggcgtagagggtttccgacgaaagcattatacttcaagtttatggacatgaactttgcagaagaagaagagaagtttagg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46875490 |
gacaaggggtagccgtgaatggcgtagagggtttccgacgaaagcattatacttcaagtttatggacatgaactttgcagaagaagaagagaagtgtagg |
46875391 |
T |
|
| Q |
118 |
gtgagagtctgttttggaaaaaggaatatatagaaatgagaaggaaacacttgaagatgttgctccaaacaaggtgcatgcatgttagctttgttttgat |
217 |
Q |
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| T |
46875390 |
gtgagagtctgttttggaaaaaggaatatatagaaatgagaaggaaacacttgaagatgttgctccaaacaaggtgcatgcatgttagctttgttttgat |
46875291 |
T |
|
| Q |
218 |
ttttcaacaaggttcaactgtcaagtgagaatcaaggaagggttaaaagagaggaccaaaaaggttggtggctcttagaggtcaatagttattaaacttt |
317 |
Q |
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| T |
46875290 |
ttttcaacaaggttcaactgtcaagtgagaatcaaggaagggttaaa-gagaggaccaaaaaggttggtggctcttagaggtcaatagttattaaacttt |
46875192 |
T |
|
| Q |
318 |
aaagcataactagtaaagctttagcatcacatacagaaataaagcaagagaatgaacattgaacatagctcatagtttaagtaagccgattaaatgaccg |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
46875191 |
aaagcataactagtaaagctttagcatcacatacagaaataaagcaagagaatgaacattgaacatagctcatagtttaagtaagtggattaaatgaccg |
46875092 |
T |
|
| Q |
418 |
gttgtaagcctctgtatgcaactctgtaaagaacgaagaggagtaacagctagagtactatccaagaaacctgtctcatcttgacaggaacaatattaag |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46875091 |
attgtaagcctctgtatgcaactctgtaaagaacgaagaggagtaacagctagagtactatccaagaaacctgtctcatcttgacaggaacaatattaag |
46874992 |
T |
|
| Q |
518 |
caaaactaacatcatagtttgccacataacagatgatatatcacagcgactgtgaacgcacaatgaatttaccaggccacaaactgtgttctgaattgat |
617 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46874991 |
caaaactaacatcatagtttgccacataacagatgatatatcacagtgactgtgaacgcacaatgaatttaccaggccacaaactgtgttctgaattgat |
46874892 |
T |
|
| Q |
618 |
tgcgaaacagacatacgcaaggagaaactaataaattgagaagctctagtaatgtaaaatttcttacttcacatattaatttatgagtcttgaactcatt |
717 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46874891 |
tgcgaaacagacatacgcaaggagaaactaataaattgagaagctctagtaatgtaaaatttcttacttcacatattaatttatgagtcttgaactcatt |
46874792 |
T |
|
| Q |
718 |
tgagaagctttcataaatcttacaacgaataaaatacagtttggttctccagttatccacaagtccagtacctgtatttcatacagggaaaaatgcagca |
817 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46874791 |
tgagaagctttcataaatcttacaacgaataaaatacagtttggttctccagttatccacaagtccagtacctgtatttcatacagggaaaaatgcagca |
46874692 |
T |
|
| Q |
818 |
cccatg |
823 |
Q |
| |
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|||||| |
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| T |
46874691 |
cccatg |
46874686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 694 - 766
Target Start/End: Complemental strand, 46892597 - 46892525
Alignment:
| Q |
694 |
taatttatgagtcttgaactcatttgagaagctttcataaatcttacaacgaataaaatacagtttggttctc |
766 |
Q |
| |
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|||||||||||||| ||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
46892597 |
taatttatgagtctagaactcaattgagaagctttcataaatcttactatgaataaaatacagtttggttctc |
46892525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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