View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16796_high_23 (Length: 305)

Name: NF16796_high_23
Description: NF16796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16796_high_23
NF16796_high_23
[»] chr2 (1 HSPs)
chr2 (18-305)||(1182430-1182717)


Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 18 - 305
Target Start/End: Original strand, 1182430 - 1182717
Alignment:
Q  18 cataactcactctcacaaacactatcccttttttaccctctagccggacgtgtccaagacgccaccaccattaactgcaccgacgatggcgttttcttcg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  1182430 cataactcactctcacaaacactatcccttttttaccctctagccggacgtgtccaagacgccaccaccattaactgcaccgacgatggcgttttcttca 1182529  T
Q  118 tcgaatcacaaaccaccagcaatctctccgatatcctcacaaaccctaatttcaacacgcttgaatgcttcctcccaattacccaagaaaaacaaaacat 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  1182530 tcgaatcacaaaccaccagcaatctctccgatatcctcacaaaccctaatttcaacacgcttgaatgcttcctcccaactacccaagaaaaacaaaacat 1182629  T
Q  218 gctcttagtaatccgtttcactttgttcagttgtggttccaccgcaattaccgtgtcccttacacataagatcgttgactttaacaca 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1182630 gctcttagtaatccgtttcactttgttcagttgtggttccaccgcaattaccgtgtcccttacacataagatcgttgactttaacaca 1182717  T

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