View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16796_high_26 (Length: 280)
Name: NF16796_high_26
Description: NF16796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16796_high_26 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 20 - 267
Target Start/End: Complemental strand, 1200312 - 1200057
Alignment:
| Q |
20 |
cttcgaagcctaacaaattgatcattgattaaatcattttgacga-----gtgtaaggagagcttggtaagggaagtccaacggtgttcccatgttttgg |
114 |
Q |
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| T |
1200312 |
cttcgaagcctaacaagttgatcattgattaaatcattttgacgatgatcgtgtaaggagagtttggtgaggaaagtccaacggtgttcccatgttttgg |
1200213 |
T |
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| Q |
115 |
ataagacagaagtgcgaactgcgtctttggttggaaggaaagagagaatgtgagttatcactggttcagggatcttggtgtggaaaatgtcttctt---c |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
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| T |
1200212 |
ataagacagaagtgcgaactgcgtctttggttggaaggaaagagagaatgtgagttatcactggttcagggatcttggtgtggaatatgtcttcttctgc |
1200113 |
T |
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| Q |
212 |
ttctttaacagcatttgcatttgctatttcggcattcttacggcacattccgcttc |
267 |
Q |
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| T |
1200112 |
ttctttaacagcatttgcatttgctatttcggcattcttaaggcacattccgcttc |
1200057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 65 - 172
Target Start/End: Complemental strand, 1213591 - 1213484
Alignment:
| Q |
65 |
gtgtaaggagagcttggtaagggaagtccaacggtgttcccatgttttggataagacagaagtgcgaactgcgtctttggttggaaggaaagagagaatg |
164 |
Q |
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| T |
1213591 |
gtgtaaagagagtttggtgagtgaagtccagcggtgttcccaactcttagataagatagaagtgcgaacagcgtctttggttgggagaaaagagagaatg |
1213492 |
T |
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| Q |
165 |
tgagttat |
172 |
Q |
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| T |
1213491 |
tgagttat |
1213484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 66 - 184
Target Start/End: Complemental strand, 580070 - 579952
Alignment:
| Q |
66 |
tgtaaggagagcttggtaagggaagtccaacggtgttcccatgttttggataagacagaagtgcgaactgcgtctttggttggaaggaaagagagaatgt |
165 |
Q |
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| T |
580070 |
tgtaaggagagtttggtgatggaagtccaacgacgttcccattttttggataagatggaggtgcgaatagcatctttggttggtacgaaactgagaatgt |
579971 |
T |
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| Q |
166 |
gagttatcactggttcagg |
184 |
Q |
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| T |
579970 |
gagttatcactggttcagg |
579952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 67 - 172
Target Start/End: Complemental strand, 1079132 - 1079027
Alignment:
| Q |
67 |
gtaaggagagcttggtaagggaagtccaacggtgttcccatgttttggataagacagaagtgcgaactgcgtctttggttggaaggaaagagagaatgtg |
166 |
Q |
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|||||||||| ||||||||| ||||||||||||||| |||| ||| ||||||||| |||||||||| || ||||||||||| || ||||||| ||||| |
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| T |
1079132 |
gtaaggagagtttggtaaggaaagtccaacggtgtttccattgtttagataagacacaagtgcgaacggcatctttggttgggagaaaagagatgatgtg |
1079033 |
T |
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| Q |
167 |
agttat |
172 |
Q |
| |
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|||||| |
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| T |
1079032 |
agttat |
1079027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 67 - 172
Target Start/End: Original strand, 5132674 - 5132779
Alignment:
| Q |
67 |
gtaaggagagcttggtaagggaagtccaacggtgttcccatgttttggataagacagaagtgcgaactgcgtctttggttggaaggaaagagagaatgtg |
166 |
Q |
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|||||||||| ||||||||| ||||||||||||||| |||| ||| ||||||||| |||||||||| || ||||||||||| || ||||||| ||||| |
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| T |
5132674 |
gtaaggagagtttggtaaggaaagtccaacggtgtttccattgtttagataagacacaagtgcgaacggcatctttggttgggagaaaagagatgatgtg |
5132773 |
T |
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| Q |
167 |
agttat |
172 |
Q |
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|||||| |
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| T |
5132774 |
agttat |
5132779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 211
Target Start/End: Original strand, 8193298 - 8193444
Alignment:
| Q |
65 |
gtgtaaggagagcttggtaagggaagtccaacggtgttcccatgttttggataagacagaagtgcgaactgcgtctttggttggaaggaaagagagaatg |
164 |
Q |
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||||| |||||| || || ||||||| ||||||| || |||| |||||||||| | | ||| ||||| || |||| || ||||| |||||||||||| |
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| T |
8193298 |
gtgtatggagagtttagtgagggaagaccaacgggttttccattttttggataaaagaaaagcacgaacagcatcttccgtcggaagaaaagagagaatg |
8193397 |
T |
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| Q |
165 |
tgagttatcactggttcagggatcttggtgtggaaaatgtcttcttc |
211 |
Q |
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| T |
8193398 |
tgagttattagttgttcagggagcttgttgtagaatatgtcatcttc |
8193444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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