View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16796_high_29 (Length: 245)
Name: NF16796_high_29
Description: NF16796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16796_high_29 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 4 - 218
Target Start/End: Complemental strand, 38473288 - 38473070
Alignment:
| Q |
4 |
caacaaaatcatcatcatctcatattat----acacctccaattttttaaatgcagaaatcatcaacaacaatgtctttttcttcttagaatttgattat |
99 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
38473288 |
caacaaaatcatcatcatctcatattatcactacacctccaattttttaaatccagaaatcatcaacaacaatgcctttttcttcttagaatttgattat |
38473189 |
T |
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| Q |
100 |
tggctgcaataaataaatctttcaaaacctttaaaggtccacacttacagttcatacctccttttcctctataaattcatagcttcaattcctacaacaa |
199 |
Q |
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||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38473188 |
tggctgcaataaataaatctttcaaaatctttaaagatccacacttacggttcatacctccttttcctctataaattcatagcttcaattcctacaacaa |
38473089 |
T |
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| Q |
200 |
cccaacacacatattcttc |
218 |
Q |
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||||||||||||||||||| |
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| T |
38473088 |
cccaacacacatattcttc |
38473070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 67 - 177
Target Start/End: Original strand, 5206590 - 5206698
Alignment:
| Q |
67 |
aacaatgtctttttcttcttagaatttgattattggc--tgcaataaataaatctttcaaaacctttaaaggtccacacttacagttcatacctcctttt |
164 |
Q |
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||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| | ||||||||||||| |||||||||| | | |||||||| |
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| T |
5206590 |
aacaatgtctttttcttcttagaatttgattatcggctgtgcaataaataaatcttttagaacctttaaaggttcacacttaca----acaactcctttt |
5206685 |
T |
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| Q |
165 |
cctctataaattc |
177 |
Q |
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| T |
5206686 |
cctctataaattc |
5206698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 14 - 206
Target Start/End: Complemental strand, 48201 - 48008
Alignment:
| Q |
14 |
atcatcatctcatattat-acacctccaattttttaaatgcagaaatcatcaacaacaatgtctttttcttcttagaatttgattattggctgcaataaa |
112 |
Q |
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|||||||||||||||||| ||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
48201 |
atcatcatctcatattatcacacctccaatttcttaaatccagaaatcgtcaacaacaatgtctttttcttcttagaatttgattatcggctacaataaa |
48102 |
T |
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| Q |
113 |
taaatctttcaaaacctttaaaggtccacacttacagttcatacctccttttcctctataaattcatagcttcaattcctacaacaacccaaca |
206 |
Q |
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| T |
48101 |
taaatctttcaaaacctttaaaggtccacacttacggtttatacctccttttcctttataaattcatagctttaattcctacaacaacccaaca |
48008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 14 - 206
Target Start/End: Original strand, 27439161 - 27439354
Alignment:
| Q |
14 |
atcatcatctcatattat-acacctccaattttttaaatgcagaaatcatcaacaacaatgtctttttcttcttagaatttgattattggctgcaataaa |
112 |
Q |
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|||||||||||||||||| ||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
27439161 |
atcatcatctcatattatcacacctccaatttcttaaatccagaaatcgtcaacaacaatgtctttttcttcttagaatttgattatcggctacaataaa |
27439260 |
T |
|
| Q |
113 |
taaatctttcaaaacctttaaaggtccacacttacagttcatacctccttttcctctataaattcatagcttcaattcctacaacaacccaaca |
206 |
Q |
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||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
27439261 |
taaatctttcaaaacctttaaaggtccacacttacggtttatacctccttttcctttataaattcatagctttaattcctacaacaacccaaca |
27439354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 9928197 - 9928122
Alignment:
| Q |
1 |
caacaacaaaatcatcatcatctcatattat----acacctccaattttttaaatgcagaaatcatcaacaacaat |
72 |
Q |
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|||||||||||||||||||||||| | | | ||||||||||||| | |||| |||||||||||||||||||| |
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| T |
9928197 |
caacaacaaaatcatcatcatctcttctcgtcactacacctccaatttctaaaattcagaaatcatcaacaacaat |
9928122 |
T |
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