View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16796_high_3 (Length: 551)
Name: NF16796_high_3
Description: NF16796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16796_high_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 18 - 551
Target Start/End: Complemental strand, 42893800 - 42893260
Alignment:
| Q |
18 |
caaagggccaattatccttgaagaaacacgtacgacgaaatatcccattcaatttcacctacaaatccatgttatgcgtttattcaattcagtaagggaa |
117 |
Q |
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| T |
42893800 |
caaagggccaattatccttgaagaaacacgtacgacgaaatatctcattcaatttcacctacaaatccatgttatgcgtttattcaattcagtaagggaa |
42893701 |
T |
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| Q |
118 |
tttggtcacnnnnnnnnnnn-------tcagcaagggaacagactccctcatagcatacagtgatggaatattagaatttcaaacaaagcatgtgcaaat |
210 |
Q |
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| T |
42893700 |
tttggtcacaaaaaaaaaaaaaaaaaatcagcaagggaacagactccctcatagcatacagtgatggaatattagaatttcaaacaaagcatgtgcaaat |
42893601 |
T |
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| Q |
211 |
taccccctaatgtaatgaaaaggcgtagtagccgttctagcaaagtgtgtcgtgtaaaacggatatgtagcatacgagagaagaatataacataaacata |
310 |
Q |
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| T |
42893600 |
taccccctaatgtaatgaaaaggcgtagtggccgttctagcaaagtgtgtcgtgtaaaacggatatgtagcatacgagagaagaatataacataaacata |
42893501 |
T |
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| Q |
311 |
gcttggtgcttaacnnnnnnnnnnnnnngcttggtctaaattaatcaaaagaatattagccaatccttatcaacattcaaaaagtcatccacacttacct |
410 |
Q |
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| T |
42893500 |
gcttggtgcttaacaaaaactaaaaaaagcttggtctaaattaatcaaaagaatattagccaatccttatcaacattcaaaaagtcatccacacttacct |
42893401 |
T |
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| Q |
411 |
tatgactattagaaaatagaaatcaatagcaacatgtaaattataagttggtagaaattattacagaaaagcactcaacataaactggctagtttctttt |
510 |
Q |
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| T |
42893400 |
tatgactattagaaaatagaaatcaatagcaacatgtaaattataagttggtagaaattattacagaaaagcactcaacacaaactggctagtttctttt |
42893301 |
T |
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| Q |
511 |
tgtataggcatgaaattatttgctattcaccatcaaacatc |
551 |
Q |
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| T |
42893300 |
tgtataggcatgaaattatttgctattcaccatcaaacatc |
42893260 |
T |
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