View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16796_high_31 (Length: 235)
Name: NF16796_high_31
Description: NF16796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16796_high_31 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 1951945 - 1951851
Alignment:
| Q |
12 |
agcagagagagtcaaggccaagttatctgcttgaaaagcatctctactctctattgctgggagagtacaacttgtcaaagcatgctattatatat |
106 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1951945 |
agcagacagagtcaaggccaagttatctgcttgaaaagcatctctactctctattgctgggagagtacaacttgtcaaagcatgctattatatat |
1951851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 74
Target Start/End: Complemental strand, 13320610 - 13320567
Alignment:
| Q |
31 |
aagttatctgcttgaaaagcatctctactctctattgctgggag |
74 |
Q |
| |
|
||||||||||| || ||||||||||| ||||||||||||||||| |
|
|
| T |
13320610 |
aagttatctgcctggaaagcatctctcctctctattgctgggag |
13320567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University