View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16796_low_10 (Length: 494)
Name: NF16796_low_10
Description: NF16796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16796_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 27 - 489
Target Start/End: Original strand, 30737471 - 30737934
Alignment:
| Q |
27 |
atgtaaacactatgcaatgaattcatcattgaagcaaggacacaaaatctattggaagcctccaatacaaaagaagcatcatagatgttttatatacatc |
126 |
Q |
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|||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
30737471 |
atgtaaacactatggaatgaattcatccttgaagcaaggacacgaaatctattggaagcctccaatacaaaagaagtatcatagatgttttatatacatc |
30737570 |
T |
|
| Q |
127 |
-atgttaaattatgccttgacccaagcataataagtcatgtctgtgaagatccttcactcagatatcagattcctccacttcagcatagagaaagactct |
225 |
Q |
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| T |
30737571 |
catgttaacttatgccttgactcaagcataataagtcatgtctgtgaagatccttcactcatatatcagactcgtccacttcagcatagagaaagcctct |
30737670 |
T |
|
| Q |
226 |
atttaagtgtgtcaaatttgcatcaagaaataccttcttgataaatgcacaaacttgttgagattactacgtactcaatacaaaggaaaaatttcctttt |
325 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
30737671 |
atttaagtgtgtcaaatttacatcaagaaataccttcttgataaatgcagaaacttgttgagattactacgtactcaatacaaaggaaaaatttcctctt |
30737770 |
T |
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| Q |
326 |
caaaataaaaaaccctacaaaatttgtaggtactactccttccaatatggaaactctggttacatttcgagcctgatcctctcttgttataataacctgg |
425 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30737771 |
caaaataaaaaaccctacaaaatttgtaggtactactccttccaatatggaaactctggttacatttcgagcctgatcctctcttgttataataacctgg |
30737870 |
T |
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| Q |
426 |
ataaaatgatctttgaaaatccacttcttcaattaacttcaatcccacattttcttcgacatcc |
489 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
30737871 |
ataaaatgatctttgaaaatccacttcttcaattaacttcaatcccacattttctgcgagatcc |
30737934 |
T |
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