View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16796_low_11 (Length: 493)

Name: NF16796_low_11
Description: NF16796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16796_low_11
NF16796_low_11
[»] chr4 (3 HSPs)
chr4 (6-477)||(41484998-41485469)
chr4 (440-477)||(49965173-49965210)
chr4 (441-477)||(34151082-34151118)
[»] chr7 (3 HSPs)
chr7 (439-477)||(45300986-45301024)
chr7 (441-477)||(522938-522974)
chr7 (437-477)||(4580549-4580589)
[»] chr6 (3 HSPs)
chr6 (439-477)||(10839961-10839999)
chr6 (440-477)||(2525516-2525553)
chr6 (441-470)||(32988544-32988573)
[»] chr5 (3 HSPs)
chr5 (443-477)||(21119133-21119167)
chr5 (439-477)||(35858245-35858283)
chr5 (441-477)||(17391117-17391153)
[»] chr8 (3 HSPs)
chr8 (440-477)||(34853069-34853106)
chr8 (441-477)||(4594724-4594760)
chr8 (441-477)||(30886725-30886761)
[»] chr3 (1 HSPs)
chr3 (440-477)||(19286684-19286721)
[»] chr2 (1 HSPs)
chr2 (440-477)||(35852249-35852286)
[»] scaffold0365 (1 HSPs)
scaffold0365 (441-477)||(246-282)
[»] chr1 (1 HSPs)
chr1 (441-477)||(14544640-14544676)


Alignment Details
Target: chr4 (Bit Score: 432; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 6 - 477
Target Start/End: Original strand, 41484998 - 41485469
Alignment:
Q  6 gatgtcgaagaatatgcatgcttatcttgcttttagtctcttgtattttggggaaataatgctagaatattttcagccctttcggttcgtttttaaatat 105  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  41484998 gatgtcgaagaggatgcatgcttatcttgcttttagtctcttgtattttggggaaataatgttagaatattttcagccctttcggttcgcttttaaatat 41485097  T
Q  106 acagtaatctttctcaaatatctttgtgtttaacatcctttgcgtgaatattttcttttcgttgttttgtttaatgttttgtcaagagtagtgattccat 205  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41485098 acagtaatctttctcgaatatctttgtgtttaacatcctttgcgtgaatattttcttttcgttgttttgtttaatgttttgtcaagagtagtgattccat 41485197  T
Q  206 acaatgatgatgttttagcattaccttcagagtagtttatccaaatgtctgttcagagttgttttgttttccaaacaagtatgatcttggcggaacctct 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41485198 acaatgatgatgttttagcattaccttcagagtagtttatccaaatgtctgttcagagttgttttgttttccaaacaagtatgatcttggcggaacctct 41485297  T
Q  306 aaggttctttgtcccaagtgtgaatatcccatcccaagcttggtgttctacttgatgtactagtggtggtggagcagttggatgcttcctacctcgtggc 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41485298 aaggttctttgtcccaagtgtgaatatcccatcccaagcttggtgttctacttgatgtactagtggtggtggagcagttggatgcttcctacctcgtggc 41485397  T
Q  406 gaaggcttagtttgtttggagagaccagactttactaagggtccgtttggtttgagaattaggagaggaggg 477  Q
    |||||||||||| ||| |||||||| || |||||||||||||||||||||||||||||||||||| ||||||    
T  41485398 gaaggcttagttcgttaggagagactaggctttactaagggtccgtttggtttgagaattaggaggggaggg 41485469  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 477
Target Start/End: Original strand, 49965173 - 49965210
Alignment:
Q  440 ctaagggtccgtttggtttgagaattaggagaggaggg 477  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  49965173 ctaagggtccgtttggttcgagaattaggaggggaggg 49965210  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 477
Target Start/End: Complemental strand, 34151118 - 34151082
Alignment:
Q  441 taagggtccgtttggtttgagaattaggagaggaggg 477  Q
    ||||||||||||||||| |||||||||||| ||||||    
T  34151118 taagggtccgtttggttcgagaattaggaggggaggg 34151082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 439 - 477
Target Start/End: Complemental strand, 45301024 - 45300986
Alignment:
Q  439 actaagggtccgtttggtttgagaattaggagaggaggg 477  Q
    ||||||||||||||||||| |||||||||||| ||||||    
T  45301024 actaagggtccgtttggttcgagaattaggaggggaggg 45300986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 477
Target Start/End: Complemental strand, 522974 - 522938
Alignment:
Q  441 taagggtccgtttggtttgagaattaggagaggaggg 477  Q
    ||||||||||||||||| |||||||||||| ||||||    
T  522974 taagggtccgtttggttcgagaattaggaggggaggg 522938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 437 - 477
Target Start/End: Original strand, 4580549 - 4580589
Alignment:
Q  437 ttactaagggtccgtttggtttgagaattaggagaggaggg 477  Q
    ||||| ||||||||||||||| |||||||||||| ||||||    
T  4580549 ttacttagggtccgtttggttcgagaattaggaggggaggg 4580589  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 439 - 477
Target Start/End: Complemental strand, 10839999 - 10839961
Alignment:
Q  439 actaagggtccgtttggtttgagaattaggagaggaggg 477  Q
    ||||||||||||||||||| |||||||||||| ||||||    
T  10839999 actaagggtccgtttggttcgagaattaggaggggaggg 10839961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 477
Target Start/End: Complemental strand, 2525553 - 2525516
Alignment:
Q  440 ctaagggtccgtttggtttgagaattaggagaggaggg 477  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  2525553 ctaagggtccgtttggttcgagaattaggaggggaggg 2525516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 470
Target Start/End: Original strand, 32988544 - 32988573
Alignment:
Q  441 taagggtccgtttggtttgagaattaggag 470  Q
    ||||||||||||||||||||||||||||||    
T  32988544 taagggtccgtttggtttgagaattaggag 32988573  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 443 - 477
Target Start/End: Original strand, 21119133 - 21119167
Alignment:
Q  443 agggtccgtttggtttgagaattaggagaggaggg 477  Q
    ||||||||||||||| |||||||||||||||||||    
T  21119133 agggtccgtttggttcgagaattaggagaggaggg 21119167  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 439 - 477
Target Start/End: Original strand, 35858245 - 35858283
Alignment:
Q  439 actaagggtccgtttggtttgagaattaggagaggaggg 477  Q
    ||||||||||||||||||| |||||||||||| ||||||    
T  35858245 actaagggtccgtttggttcgagaattaggaggggaggg 35858283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 477
Target Start/End: Original strand, 17391117 - 17391153
Alignment:
Q  441 taagggtccgtttggtttgagaattaggagaggaggg 477  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  17391117 taagggtccgttttgttcgagaattaggagaggaggg 17391153  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 477
Target Start/End: Complemental strand, 34853106 - 34853069
Alignment:
Q  440 ctaagggtccgtttggtttgagaattaggagaggaggg 477  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  34853106 ctaagggtccgtttggttcgagaattaggaggggaggg 34853069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 477
Target Start/End: Original strand, 4594724 - 4594760
Alignment:
Q  441 taagggtccgtttggtttgagaattaggagaggaggg 477  Q
    ||||||||||||||||| |||||||||||| ||||||    
T  4594724 taagggtccgtttggttcgagaattaggaggggaggg 4594760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 477
Target Start/End: Original strand, 30886725 - 30886761
Alignment:
Q  441 taagggtccgtttggtttgagaattaggagaggaggg 477  Q
    ||||||||||||||||| |||||||||||| ||||||    
T  30886725 taagggtccgtttggttcgagaattaggaggggaggg 30886761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 477
Target Start/End: Complemental strand, 19286721 - 19286684
Alignment:
Q  440 ctaagggtccgtttggtttgagaattaggagaggaggg 477  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  19286721 ctaagggtccgtttggttcgagaattaggaggggaggg 19286684  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 477
Target Start/End: Original strand, 35852249 - 35852286
Alignment:
Q  440 ctaagggtccgtttggtttgagaattaggagaggaggg 477  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  35852249 ctaagggtccgtttggttcgagaattaggaggggaggg 35852286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 477
Target Start/End: Original strand, 246 - 282
Alignment:
Q  441 taagggtccgtttggtttgagaattaggagaggaggg 477  Q
    ||||||||||||||||| |||||||||||| ||||||    
T  246 taagggtccgtttggttcgagaattaggaggggaggg 282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 477
Target Start/End: Complemental strand, 14544676 - 14544640
Alignment:
Q  441 taagggtccgtttggtttgagaattaggagaggaggg 477  Q
    ||||||||||||||||| |||||||||||| ||||||    
T  14544676 taagggtccgtttggttcgagaattaggaggggaggg 14544640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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