View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16796_low_12 (Length: 487)
Name: NF16796_low_12
Description: NF16796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16796_low_12 |
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| [»] scaffold0060 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 19 - 454
Target Start/End: Complemental strand, 8061442 - 8061007
Alignment:
| Q |
19 |
aatgtgggtacgaaagataaatatgtaaagagaagacgtggaagtgttgaacctgcacaacctttagcaatttatggtacc-tctttccagtgcaacatc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
8061442 |
aatgtgggtacgaaagataaatatgtaaagagaagacgtggaagtgttgaacctgcacaacctttagcaatttatggtaccctctttccactgcaacatc |
8061343 |
T |
|
| Q |
118 |
caaaatctgattgatataatacacctaatatagtatatagagaaaacctgaggaatgtcatgaccccgtcagtccctaaagagatctgctgacctcgaca |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||| | |||||||||| ||||||||||| |
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| T |
8061342 |
caaaatctgattgatataatacacctaatatagtatatatagaaaacctgaaaaatgccatgaccccgtcagtccttgaagagatctgatgacctcgaca |
8061243 |
T |
|
| Q |
218 |
gggatgatccctagtactacatatcactcaataattagaaaatcagagctatatagttctcttagcgttatgggatgtgaggaagaagaagtgaatgaat |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||| |||||||||||||||||||||| |
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| T |
8061242 |
gggatgatccctagtactacatatcactcaataattagaaaattagagctatatagttctcttgacgttatggaatgggaggaagaagaagtgaatgaat |
8061143 |
T |
|
| Q |
318 |
cttgatgatcaagatccccttatttatatagttcaatactagaagcagtggatgagtagagagtggaggatccgggggtctcccactactccacctcttc |
417 |
Q |
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| T |
8061142 |
cgtgatgatcaagat-cccttatttatatagttcaatactagaagcagtggatgagtagagagtggaggatcctggggtctcccactactccacctcttc |
8061044 |
T |
|
| Q |
418 |
tagacttaatcaaagcctaatgtgttttatataagaa |
454 |
Q |
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| T |
8061043 |
tagacttaatcgaagcttaatgtgttttatataagaa |
8061007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 36 - 167
Target Start/End: Complemental strand, 44629382 - 44629251
Alignment:
| Q |
36 |
taaatatgtaaagagaagacgtggaagtgttgaacctgcacaacctttagcaatttatggtacctc--tttccagtgcaacatccaaaatctgattgata |
133 |
Q |
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|||||||||||| |||||| ||||||||||| |||| || |||||||| || ||| | ||| | |||||| ||||||| || |||| | ||||||| |
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| T |
44629382 |
taaatatgtaaaaagaagatgtggaagtgtttaaccggcg--acctttagtaaattacagcacccccctttccactgcaacagccgaaatttaattgata |
44629285 |
T |
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| Q |
134 |
taatacacctaatatagtatatagagaaaacctg |
167 |
Q |
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||||||||||||||||||||||| ||||||||| |
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| T |
44629284 |
taatacacctaatatagtatataaggaaaacctg |
44629251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 47520480 - 47520536
Alignment:
| Q |
128 |
ttgatataatacacctaatatagtatatagagaaaacctgaggaatgtcatgacccc |
184 |
Q |
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| T |
47520480 |
ttgatataatacatctaatatagtatataacgaaaacttgggggatgtcatggcccc |
47520536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 87 - 154
Target Start/End: Original strand, 52490398 - 52490465
Alignment:
| Q |
87 |
aatttatggtacctctttccagtgcaacatccaaaatctgattgatataatacacctaatatagtata |
154 |
Q |
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| T |
52490398 |
aatttatagtacccctttccagtgcaacaaccgaattctgattgatataacacacctaatataatata |
52490465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 49 - 156
Target Start/End: Original strand, 14735646 - 14735752
Alignment:
| Q |
49 |
agaagacgtggaagtgttgaacctgcacaacctttagcaatttatggtacctc-tttccagtgcaacatccaaaatctgattgatataatacacctaata |
147 |
Q |
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|||||| ||| |||||||||||| |||||||||| ||||||| ||||| | |||||| ||||| ||||| ||| ||||||||||||||||||||| |
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| T |
14735646 |
agaagatgtgtaagtgttgaacca--acaacctttaacaatttacagtaccccatttccacaacaacaaccaaattctaattgatataatacacctaata |
14735743 |
T |
|
| Q |
148 |
tagtatata |
156 |
Q |
| |
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||||||||| |
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| T |
14735744 |
tagtatata |
14735752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 156
Target Start/End: Original strand, 17303204 - 17303284
Alignment:
| Q |
76 |
caacctttagcaatttatggtacctctttccagtgcaacatccaaaatctgattgatataatacacctaatatagtatata |
156 |
Q |
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| T |
17303204 |
caacctttcccaatttatggcacctcttaccactacaacaaccgaattgttattgatattatacacctaatatagtatata |
17303284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 156
Target Start/End: Complemental strand, 35825 - 35713
Alignment:
| Q |
44 |
taaagagaagacgtggaagtgttgaacctgcacaacctttagcaatttatggtacctctttccagtgcaacatccaaaatctgattgatataatacacct |
143 |
Q |
| |
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|||| ||||||| |||||||||||||| |||||||||| ||||| |||| ||| ||| ||| ||||||| | || | | ||||| || |||||||| |
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| T |
35825 |
taaaaagaagactaggaagtgttgaacccacacaacctttcccaattcatggcaccccttaccactgcaacaactgaattattattgaaattatacacct |
35726 |
T |
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| Q |
144 |
aatatagtatata |
156 |
Q |
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||||||||||||| |
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| T |
35725 |
aatatagtatata |
35713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 167
Target Start/End: Complemental strand, 23825995 - 23825955
Alignment:
| Q |
127 |
attgatataatacacctaatatagtatatagagaaaacctg |
167 |
Q |
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|||| ||||||||||||||||||||||||| |||||||||| |
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| T |
23825995 |
attggtataatacacctaatatagtatataaagaaaacctg |
23825955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 165
Target Start/End: Original strand, 32633212 - 32633257
Alignment:
| Q |
120 |
aaatctgattgatataatacacctaatatagtatatagagaaaacc |
165 |
Q |
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| T |
32633212 |
aaatttgattaatataatacacctaatatagtatataaggaaaacc |
32633257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 99
Target Start/End: Original strand, 32786790 - 32786855
Alignment:
| Q |
32 |
aagataaatatgtaaagagaagacgtggaagtgttgaacctgcacaacctttagcaatttatggtacc |
99 |
Q |
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| T |
32786790 |
aagataaatatgtaaaaagatgttgtggaagtgttgaacc--cgcgacctttagcaatttacggtacc |
32786855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 206
Target Start/End: Complemental strand, 4221235 - 4221059
Alignment:
| Q |
32 |
aagataaatatgtaaagagaagacgtg--gaagtgttgaacctgcacaacctttagcaatttatggtacctc-tttccagtgcaacatccaaaatctgat |
128 |
Q |
| |
|
|||||||||||| ||| |||||| ||| ||||||||||||| ||| || |||||||||||| | ||| | |||||| ||||||| | |||||| || |
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|
| T |
4221235 |
aagataaatatgcaaaaagaagatgtgtggaagtgttgaaccagca--acttttagcaatttacgacaccccatttccactgcaacagctgaaatctaat |
4221138 |
T |
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| Q |
129 |
tgatataatacacctaatatagtatatagagaaaacctgaggaatgtcatgacccc-gtcagtccctaaagagatctgc |
206 |
Q |
| |
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|||| || |||||||||| | ||||| ||||||||| || ||| |||| |||| | | |||||||||||||||||| |
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| T |
4221137 |
tgatttatgacacctaatacaaaatataaggaaaacctgggggatgccatggcccctgcctgtccctaaagagatctgc |
4221059 |
T |
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