View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16796_low_18 (Length: 378)

Name: NF16796_low_18
Description: NF16796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16796_low_18
NF16796_low_18
[»] chr4 (43 HSPs)
chr4 (163-376)||(10715654-10715868)
chr4 (163-376)||(10929424-10929638)
chr4 (164-376)||(4552184-4552396)
chr4 (164-369)||(2017342-2017547)
chr4 (164-372)||(40969227-40969435)
chr4 (164-339)||(4728594-4728769)
chr4 (164-376)||(46645590-46645814)
chr4 (164-337)||(2576209-2576383)
chr4 (240-372)||(31364138-31364270)
chr4 (164-280)||(32005978-32006094)
chr4 (240-335)||(10058577-10058672)
chr4 (164-263)||(43003089-43003188)
chr4 (276-376)||(41972454-41972554)
chr4 (164-254)||(52373875-52373965)
chr4 (164-285)||(2521803-2521924)
chr4 (276-368)||(49745046-49745138)
chr4 (170-256)||(50099989-50100075)
chr4 (164-261)||(9003669-9003766)
chr4 (164-376)||(50383887-50384084)
chr4 (276-371)||(50099844-50099939)
chr4 (281-376)||(8901802-8901897)
chr4 (276-335)||(25237616-25237675)
chr4 (164-232)||(41972347-41972415)
chr4 (180-267)||(1585777-1585864)
chr4 (164-235)||(14044464-14044535)
chr4 (164-237)||(11826953-11827026)
chr4 (164-215)||(10058676-10058727)
chr4 (276-339)||(31929048-31929111)
chr4 (168-262)||(49745168-49745263)
chr4 (276-367)||(52373746-52373837)
chr4 (320-376)||(32005913-32005969)
chr4 (321-376)||(1585708-1585763)
chr4 (276-339)||(2521948-2522011)
chr4 (164-215)||(31364274-31364325)
chr4 (283-337)||(14044395-14044449)
chr4 (283-335)||(9003607-9003659)
chr4 (283-335)||(9694139-9694191)
chr4 (195-235)||(25237728-25237768)
chr4 (276-339)||(36947554-36947617)
chr4 (341-376)||(2576158-2576193)
chr4 (164-235)||(32828283-32828354)
chr4 (219-262)||(43003165-43003208)
chr4 (170-235)||(9694206-9694270)
[»] chr5 (42 HSPs)
chr5 (164-376)||(30248963-30249175)
chr5 (164-348)||(35468929-35469113)
chr5 (164-376)||(34443964-34444177)
chr5 (164-373)||(15675302-15675523)
chr5 (164-308)||(14832716-14832860)
chr5 (168-308)||(2476431-2476571)
chr5 (164-339)||(33006942-33007096)
chr5 (240-339)||(34846402-34846501)
chr5 (276-376)||(15503914-15504014)
chr5 (168-285)||(15504038-15504155)
chr5 (164-257)||(1672392-1672485)
chr5 (164-262)||(12267288-12267385)
chr5 (164-262)||(36234460-36234558)
chr5 (164-285)||(6900856-6900977)
chr5 (164-261)||(16567904-16568001)
chr5 (164-261)||(32953573-32953670)
chr5 (164-242)||(21069153-21069231)
chr5 (164-261)||(7161989-7162086)
chr5 (276-339)||(16667499-16667562)
chr5 (164-235)||(37552053-37552124)
chr5 (164-235)||(37654883-37654954)
chr5 (164-262)||(13942658-13942755)
chr5 (182-256)||(767416-767490)
chr5 (164-261)||(43228548-43228645)
chr5 (301-376)||(42989532-42989607)
chr5 (276-337)||(21069046-21069107)
chr5 (276-339)||(17192675-17192738)
chr5 (276-376)||(36234588-36234688)
chr5 (276-339)||(767317-767380)
chr5 (164-215)||(34846505-34846556)
chr5 (278-368)||(7159609-7159699)
chr5 (283-339)||(7162096-7162152)
chr5 (159-235)||(37779782-37779858)
chr5 (283-339)||(43228655-43228711)
chr5 (281-339)||(12267420-12267478)
chr5 (283-337)||(32953680-32953734)
chr5 (159-235)||(37607575-37607651)
chr5 (164-199)||(42989673-42989708)
chr5 (239-285)||(39605801-39605847)
chr5 (349-378)||(21068993-21069022)
chr5 (333-369)||(2476409-2476445)
chr5 (237-285)||(17192603-17192651)
[»] chr2 (30 HSPs)
chr2 (164-376)||(41114774-41114986)
chr2 (166-376)||(18299049-18299259)
chr2 (164-376)||(6799790-6800002)
chr2 (164-376)||(13203766-13203978)
chr2 (164-376)||(29257365-29257577)
chr2 (240-376)||(22572681-22572817)
chr2 (164-285)||(303996-304117)
chr2 (164-263)||(41010624-41010723)
chr2 (240-376)||(2475821-2475962)
chr2 (164-368)||(17148788-17149007)
chr2 (164-235)||(2475946-2476017)
chr2 (164-235)||(17249470-17249541)
chr2 (279-368)||(12000529-12000619)
chr2 (168-285)||(12000646-12000764)
chr2 (276-366)||(41010484-41010574)
chr2 (276-368)||(304141-304231)
chr2 (279-335)||(15651247-15651303)
chr2 (164-236)||(22572626-22572698)
chr2 (164-235)||(45444357-45444429)
chr2 (277-343)||(17249350-17249416)
chr2 (183-271)||(15651344-15651433)
chr2 (276-344)||(25562966-25563034)
chr2 (188-256)||(25563091-25563159)
chr2 (164-235)||(33909251-33909322)
chr2 (277-367)||(33909359-33909449)
chr2 (277-367)||(15429186-15429276)
chr2 (221-262)||(41010604-41010645)
chr2 (164-232)||(16220933-16221001)
chr2 (276-338)||(34756728-34756790)
chr2 (240-285)||(17249441-17249486)
[»] chr6 (22 HSPs)
chr6 (164-376)||(34248918-34249130)
chr6 (164-376)||(23663664-23663876)
chr6 (164-338)||(9696092-9696266)
chr6 (164-339)||(2941258-2941433)
chr6 (164-343)||(9046820-9046999)
chr6 (164-373)||(10397714-10397906)
chr6 (164-339)||(15122079-15122254)
chr6 (164-339)||(15528982-15529157)
chr6 (240-373)||(1781003-1781136)
chr6 (164-285)||(31188217-31188338)
chr6 (164-285)||(2836072-2836193)
chr6 (164-368)||(14938827-14939019)
chr6 (164-237)||(1780948-1781021)
chr6 (164-261)||(28614309-28614406)
chr6 (276-368)||(339342-339434)
chr6 (164-278)||(31200061-31200176)
chr6 (164-253)||(2960794-2960883)
chr6 (164-262)||(34188911-34189009)
chr6 (276-344)||(2836217-2836285)
chr6 (164-235)||(339478-339549)
chr6 (283-364)||(2960695-2960776)
chr6 (345-378)||(9047013-9047046)
[»] chr1 (39 HSPs)
chr1 (164-376)||(25007462-25007674)
chr1 (164-376)||(25011442-25011653)
chr1 (164-376)||(27583922-27584130)
chr1 (164-369)||(37153895-37154100)
chr1 (164-376)||(44305410-44305622)
chr1 (164-335)||(14727369-14727540)
chr1 (164-376)||(27460694-27460888)
chr1 (164-308)||(1428324-1428468)
chr1 (240-338)||(31844601-31844699)
chr1 (231-339)||(6331721-6331829)
chr1 (276-371)||(24646056-24646151)
chr1 (240-339)||(8239326-8239427)
chr1 (164-285)||(4641942-4642063)
chr1 (164-242)||(33468876-33468954)
chr1 (164-261)||(4774085-4774182)
chr1 (164-237)||(31844546-31844619)
chr1 (276-376)||(9527043-9527143)
chr1 (240-316)||(33468931-33469007)
chr1 (164-242)||(34459253-34459331)
chr1 (164-237)||(8239409-8239482)
chr1 (164-376)||(44238750-44238976)
chr1 (164-236)||(9527195-9527267)
chr1 (168-235)||(49898527-49898594)
chr1 (300-376)||(4774005-4774081)
chr1 (278-368)||(4642089-4642179)
chr1 (278-343)||(24745443-24745508)
chr1 (276-368)||(6802113-6802209)
chr1 (281-339)||(48940438-48940496)
chr1 (164-235)||(24646187-24646258)
chr1 (164-242)||(6801989-6802067)
chr1 (182-256)||(48940328-48940402)
chr1 (240-285)||(34459231-34459276)
chr1 (164-235)||(24745546-24745615)
chr1 (164-214)||(6331825-6331875)
chr1 (277-339)||(34459144-34459206)
chr1 (240-285)||(49898498-49898543)
chr1 (159-198)||(17875579-17875618)
chr1 (334-372)||(14727320-14727358)
chr1 (240-285)||(9527167-9527212)
[»] chr3 (33 HSPs)
chr3 (170-376)||(44047588-44047794)
chr3 (164-376)||(28311281-28311493)
chr3 (164-376)||(53651902-53652114)
chr3 (164-376)||(14461069-14461281)
chr3 (164-376)||(7500948-7501172)
chr3 (164-376)||(12909824-12910042)
chr3 (240-376)||(25391805-25391941)
chr3 (164-308)||(43700098-43700242)
chr3 (3-132)||(7660401-7660531)
chr3 (240-339)||(26371002-26371101)
chr3 (164-276)||(33178997-33179109)
chr3 (240-335)||(37516687-37516782)
chr3 (164-262)||(41218260-41218358)
chr3 (276-368)||(33179141-33179233)
chr3 (164-237)||(26370947-26371020)
chr3 (276-368)||(53068254-53068346)
chr3 (283-371)||(53987873-53987961)
chr3 (164-235)||(53987976-53988048)
chr3 (283-378)||(9600352-9600447)
chr3 (164-237)||(25391750-25391823)
chr3 (278-350)||(38239483-38239555)
chr3 (164-215)||(37516786-37516837)
chr3 (305-376)||(44625702-44625773)
chr3 (164-237)||(26278473-26278546)
chr3 (3-87)||(7623128-7623212)
chr3 (277-337)||(41218389-41218449)
chr3 (283-337)||(35077267-35077321)
chr3 (283-339)||(26278404-26278460)
chr3 (345-376)||(43700240-43700271)
chr3 (334-372)||(37516638-37516676)
chr3 (181-235)||(41358541-41358595)
chr3 (282-368)||(47511667-47511753)
chr3 (276-317)||(43447619-43447660)
[»] chr8 (19 HSPs)
chr8 (164-376)||(28928057-28928270)
chr8 (164-376)||(36406394-36406618)
chr8 (240-376)||(24965031-24965167)
chr8 (180-339)||(3383940-3384099)
chr8 (164-376)||(27321767-27321967)
chr8 (164-263)||(34282765-34282864)
chr8 (164-249)||(35384270-35384355)
chr8 (275-367)||(34282913-34283005)
chr8 (276-344)||(13243124-13243192)
chr8 (276-376)||(21138075-21138175)
chr8 (164-263)||(13243242-13243341)
chr8 (164-235)||(38214865-38214936)
chr8 (283-364)||(38214769-38214850)
chr8 (221-277)||(39431591-39431647)
chr8 (276-335)||(39431679-39431738)
chr8 (164-215)||(24965171-24965222)
chr8 (182-237)||(31500736-31500791)
chr8 (282-368)||(31500854-31500950)
chr8 (218-262)||(34282840-34282884)
[»] scaffold0618 (1 HSPs)
scaffold0618 (164-376)||(1694-1906)
[»] scaffold0075 (2 HSPs)
scaffold0075 (164-376)||(11523-11734)
scaffold0075 (164-376)||(6909-7120)
[»] chr7 (39 HSPs)
chr7 (164-343)||(23704374-23704553)
chr7 (164-339)||(35300333-35300508)
chr7 (240-339)||(26722919-26723018)
chr7 (164-235)||(3012461-3012532)
chr7 (278-367)||(21688122-21688211)
chr7 (164-263)||(21932647-21932746)
chr7 (164-262)||(4843432-4843530)
chr7 (164-254)||(7873125-7873215)
chr7 (164-261)||(22206591-22206688)
chr7 (164-261)||(22228051-22228148)
chr7 (164-256)||(5991325-5991417)
chr7 (164-278)||(21688244-21688359)
chr7 (164-263)||(28693908-28694007)
chr7 (275-342)||(41759624-41759691)
chr7 (278-376)||(21932798-21932895)
chr7 (164-354)||(38991082-38991255)
chr7 (164-233)||(26722864-26722933)
chr7 (276-368)||(815002-815094)
chr7 (164-228)||(41759532-41759596)
chr7 (276-339)||(38129010-38129073)
chr7 (276-368)||(42439591-42439683)
chr7 (168-262)||(19377523-19377618)
chr7 (276-339)||(28694057-28694120)
chr7 (283-378)||(30852339-30852434)
chr7 (164-242)||(42439467-42439545)
chr7 (168-232)||(814882-814946)
chr7 (276-339)||(4843339-4843402)
chr7 (164-235)||(25688116-25688187)
chr7 (276-338)||(3012346-3012408)
chr7 (283-376)||(7873232-7873337)
chr7 (164-235)||(30852449-30852520)
chr7 (279-339)||(19377430-19377490)
chr7 (283-330)||(5991432-5991479)
chr7 (164-235)||(38128886-38128957)
chr7 (240-285)||(3012432-3012477)
chr7 (283-330)||(25688202-25688249)
chr7 (231-285)||(38128932-38128986)
chr7 (294-330)||(22206709-22206745)
chr7 (294-330)||(22227994-22228030)
[»] scaffold0638 (2 HSPs)
scaffold0638 (159-237)||(4215-4293)
scaffold0638 (283-339)||(4146-4202)
[»] scaffold0021 (3 HSPs)
scaffold0021 (164-235)||(109208-109280)
scaffold0021 (176-233)||(112121-112179)
scaffold0021 (276-337)||(109316-109377)


Alignment Details
Target: chr4 (Bit Score: 163; Significance: 6e-87; HSPs: 43)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 163 - 376
Target Start/End: Complemental strand, 10715868 - 10715654
Alignment:
Q  163 tattttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggat 262  Q
    |||||||||||| ||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  10715868 tattttatagagcctgggcaaaaaatttatcgcaaaacattacttccttcctgcgaataatttcacatttcctgcagataatttcacatttcctacggat 10715769  T
Q  263 atatctttcttgcggaacctaaatccttggcaaaatatgca-ggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattcta 361  Q
    ||||||||| |||||||||||||||||||||||||| |||| || |||||||||| |||||||||||||||||||||| ||| |||||||||||||||||    
T  10715768 atatctttcctgcggaacctaaatccttggcaaaatctgcagggcaatgtgtttcctgcggaatttacacaaaaatccgcaggaaaagctaaaaattcta 10715669  T
Q  362 gtaatggttgggctt 376  Q
    |||||||||||||||    
T  10715668 gtaatggttgggctt 10715654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 163 - 376
Target Start/End: Complemental strand, 10929638 - 10929424
Alignment:
Q  163 tattttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggat 262  Q
    |||||||||||| ||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  10929638 tattttatagagcctgggcaaaaaatttatcgcaaaacattacttccttcctgcgaataatttcacatttcctgcagataatttcacatttcctacggat 10929539  T
Q  263 atatctttcttgcggaacctaaatccttggcaaaatatgca-ggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattcta 361  Q
    ||||||||| |||||||||||||||||||||||||| |||| || |||||||||| |||||||||||||||||||||| ||| |||||||||||||||||    
T  10929538 atatctttcctgcggaacctaaatccttggcaaaatctgcagggcaatgtgtttcctgcggaatttacacaaaaatccgcaggaaaagctaaaaattcta 10929439  T
Q  362 gtaatggttgggctt 376  Q
    |||||||||||||||    
T  10929438 gtaatggttgggctt 10929424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 164 - 376
Target Start/End: Complemental strand, 4552396 - 4552184
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||   |||||||||||||||||| ||||||| |||||||||||||||||||    
T  4552396 attttatagagtctgggcaaaaaatttatcgcaaaacgttacttccttcctacaaataatttcacatttcctgcagataaattcacatttcctacggata 4552297  T
Q  264 tatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagt 363  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||   |||| ||||||||||||||| |||||| ||| |||||||||||||||||||    
T  4552296 tatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatacatttcctgcggaatttacacacaaatccgcaggaaaagctaaaaattctagt 4552197  T
Q  364 aatggttgggctt 376  Q
    |||||| ||||||    
T  4552196 aatggtagggctt 4552184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 164 - 369
Target Start/End: Original strand, 2017342 - 2017547
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    |||||||| || ||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||    
T  2017342 attttataaagcctgggcaaaaaatttatcgcaaaacgttacttccttcctacgaataatttcacatttcctacagataaattcacatttcctacggata 2017441  T
Q  264 tatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagt 363  Q
    |||||||| |||||||||||||| ||||||||||| ||| ||||||   |||| |||||||||||||||||||||| ||| |||||||||||||||||||    
T  2017442 tatctttcctgcggaacctaaatacttggcaaaatctgcgggaaatacatttcctgcggaatttacacaaaaatccgcaggaaaagctaaaaattctagt 2017541  T
Q  364 aatggt 369  Q
    ||||||    
T  2017542 aatggt 2017547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 164 - 372
Target Start/End: Complemental strand, 40969435 - 40969227
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    |||||||||||  |||||||||||||||| |||||||||||||||||| ||| ||||||||||| |||| || |||||||||||||||||||||||||||    
T  40969435 attttatagagcttgggcaaaaaatttatcgcaaaacgttacttcctttctgcgaataatttcatattttctgcagataatttcacatttcctacggata 40969336  T
Q  264 tatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagt 363  Q
    |||||||| ||||||||||||||| ||| |||||| ||||| ||||||||||| ||| |||||||||||||||||| ||| ||||||||||||||||  |    
T  40969335 tatctttcctgcggaacctaaatcattgacaaaatctgcagaaaatgtgtttcctgcagaatttacacaaaaatccgcaggaaaagctaaaaattctcat 40969236  T
Q  364 aatggttgg 372  Q
    |||||||||    
T  40969235 aatggttgg 40969227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 164 - 339
Target Start/End: Complemental strand, 4728769 - 4728594
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||| || |||||||||||||||||||||| ||||    
T  4728769 attttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctgcaaataatttcacattttctgcagataatttcacatttcctacagata 4728670  T
Q  264 tatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatcc 339  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||    
T  4728669 tatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttactcaaaaatcc 4728594  T

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Target: chr4; HSP #7
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 164 - 376
Target Start/End: Complemental strand, 46645814 - 46645590
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||  | ||||||||| |||| |||||||||    
T  46645814 attttatagagtctgggaaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgtatataatttcatattttctacggata 46645715  T
Q  264 tatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaa------------atccacagaaaaagct 351  Q
    |||||||| |||||||||||||  ||||||||||| |||| |||||||||||| ||| ||||||||||||||            |||| |||||||||||    
T  46645714 tatctttcctgcggaacctaaactcttggcaaaatctgcatgaaatgtgtttcctgcagaatttacacaaaaatccgcaggtaaatccgcagaaaaagct 46645615  T
Q  352 aaaaattctagtaatggttgggctt 376  Q
    |||||||||||||||||||||||||    
T  46645614 aaaaattctagtaatggttgggctt 46645590  T

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Target: chr4; HSP #8
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 164 - 337
Target Start/End: Complemental strand, 2576383 - 2576209
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    |||||||| ||||||||||||||| |||| |||||||||||||||||| ||| || |||||||| |||| || |||||||||| ||||||||||||||||    
T  2576383 attttataaagtctgggcaaaaaaattatcgcaaaacgttacttcctttctgcgattaatttcatattttctgcagataattttacatttcctacggata 2576284  T
Q  264 tatctttcttgcggaacctaaatccttggc-aaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaat 337  Q
    ||| |||| ||||||||||| ||||||||| ||||| ||||||||||||||||| ||||||||||| ||||||||    
T  2576283 tatatttcctgcggaacctacatccttggcaaaaatctgcaggaaatgtgtttcctgcggaatttatacaaaaat 2576209  T

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Target: chr4; HSP #9
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 240 - 372
Target Start/End: Complemental strand, 31364270 - 31364138
Alignment:
Q  240 ataatttcacatttcctacggatatatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatcc 339  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  31364270 ataatttcacatttcctacggatatatcttttctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatcc 31364171  T
Q  340 acagaaaaagctaaaaattctagtaatggttgg 372  Q
     ||| |||| |||||| ||||||||||||||||    
T  31364170 gcaggaaaaactaaaatttctagtaatggttgg 31364138  T

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Target: chr4; HSP #10
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 164 - 280
Target Start/End: Complemental strand, 32006094 - 32005978
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||| || |||| |||||||||||||||||||    
T  32006094 attttatagagtctgggcaaaaaatttatcgcaaaacgttacttccttcctacgaataatttcacatttcctgcaaataaattcacatttcctacggata 32005995  T
Q  264 tatctttcttgcggaac 280  Q
    |||||||| ||||||||    
T  32005994 tatctttcctgcggaac 32005978  T

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Target: chr4; HSP #11
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 240 - 335
Target Start/End: Complemental strand, 10058672 - 10058577
Alignment:
Q  240 ataatttcacatttcctacggatatatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaa 335  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||| ||||||||||||| ||||||||||||||||||    
T  10058672 ataatttcacatttcctacggatatatctttcctgcggaacctaaatccttggtaaaatctgctggaaatgtgtttcctgcggaatttacacaaaa 10058577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 164 - 263
Target Start/End: Original strand, 43003089 - 43003188
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    |||||||||||||||| |||||||||||||||| ||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||| ||||    
T  43003089 attttatagagtctggacaaaaaatttattgcagaacgttacttctttcctgcgaataatttcacatttcctgcagataatttcacatttcctaccgata 43003188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 276 - 376
Target Start/End: Original strand, 41972454 - 41972554
Alignment:
Q  276 ggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagtaatggttgggct 375  Q
    ||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||| |||||||||||||| ||||    
T  41972454 ggaaccttaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaggaaaagctaaaagttctagtaatggttcggct 41972553  T
Q  376 t 376  Q
    |    
T  41972554 t 41972554  T

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Target: chr4; HSP #14
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 164 - 254
Target Start/End: Complemental strand, 52373965 - 52373875
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttc 254  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||    
T  52373965 attttatagagtctgtgcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgcggataatttcacatttc 52373875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 164 - 285
Target Start/End: Original strand, 2521803 - 2521924
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    ||||||||||   |||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||| | |||||| |||||||| || ||||||    
T  2521803 attttatagaacatgggcaaaaaatttatcgtaaaacgttacttccttcctgcgaataatttcacatttcctgcggataatatcacattttctgcggata 2521902  T
Q  264 tatctttcttgcggaacctaaa 285  Q
    | |||||| |||||| ||||||    
T  2521903 tgtctttcctgcggatcctaaa 2521924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 276 - 368
Target Start/End: Complemental strand, 49745138 - 49745046
Alignment:
Q  276 ggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagtaatgg 368  Q
    ||||||||||||||||||||||| ||||| ||||||||||| | ||||||||||||||||||| |||| ||||| ||||| ||||||||||||    
T  49745138 ggaacctaaatccttggcaaaatctgcagaaaatgtgtttcctacggaatttacacaaaaatctacaggaaaaggtaaaacttctagtaatgg 49745046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 170 - 256
Target Start/End: Complemental strand, 50100075 - 50099989
Alignment:
Q  170 tagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcct 256  Q
    |||||| |||| ||||||||||| |||||||||||||||||||||  ||||||||||||||||||| | ||||||||||||||||||    
T  50100075 tagagtttgggtaaaaaatttatcgcaaaacgttacttccttcctacgaataatttcacatttcctgcggataatttcacatttcct 50099989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 164 - 261
Target Start/End: Complemental strand, 9003766 - 9003669
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacgga 261  Q
    ||||||||||| |||| ||||||| |||| |||||| |||||||||||| || ||||||||||||||||||||  |||||||||||||||||| ||||    
T  9003766 attttatagagcctggacaaaaaaattatcgcaaaatgttacttccttcttgcgaataatttcacatttcctatggataatttcacatttcctgcgga 9003669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 164 - 376
Target Start/End: Complemental strand, 50384084 - 50383887
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    ||||||||||| ||||||||||||   ||||||||||||||||||||||||| ||||||||| | | ||||| | ||| ||||||||||||||||||||     
T  50384084 attttatagagcctgggcaaaaaaaa-attgcaaaacgttacttccttcctgcgaataattttataattcctgcggattatttcacatttcctacggat- 50383987  T
Q  264 tatctttcttgcggaacctaaa---tccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattct 360  Q
                    ||||||   ||||||||||||| ||||||||||||||||| |||  ||||||| |||| |||| ||| ||||||||||| ||||    
T  50383986 ----------------cctaaaatatccttggcaaaatctgcaggaaatgtgtttcctgcaaaatttacgcaaacatccgcaggaaaagctaaaagttct 50383903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 276 - 371
Target Start/End: Complemental strand, 50099939 - 50099844
Alignment:
Q  276 ggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagtaatggttg 371  Q
    ||||||||||||||| ||||||| ||||| |||||  |||| | |||||||||||||||||||| |||||||||||||||  ||||||||||||||    
T  50099939 ggaacctaaatccttagcaaaatttgcagaaaatgaatttcctacggaatttacacaaaaatccgcagaaaaagctaaaagctctagtaatggttg 50099844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 281 - 376
Target Start/End: Complemental strand, 8901897 - 8901802
Alignment:
Q  281 ctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagtaatggttgggctt 376  Q
    |||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||  ||| ||||| ||||| |||||  ||||| |||||||    
T  8901897 ctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggagtttacacaaaaatctgcaggaaaagttaaaagttctaaaaatggctgggctt 8901802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 276 - 335
Target Start/End: Complemental strand, 25237675 - 25237616
Alignment:
Q  276 ggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaa 335  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  25237675 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaa 25237616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 41972347 - 41972415
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacattt 232  Q
    |||||||| | ||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  41972347 attttataaaatctggtcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacattt 41972415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 267
Target Start/End: Complemental strand, 1585864 - 1585777
Alignment:
Q  180 gcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggatatatc 267  Q
    |||||||| |||| |||||||||| ||| |||| |  ||||||||||||||||||| ||||||| || ||||||||||||||||||||    
T  1585864 gcaaaaaaattatcgcaaaacgttgctttcttcgtacgaataatttcacatttcctgcagataaatttacatttcctacggatatatc 1585777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 235
Target Start/End: Complemental strand, 14044535 - 14044464
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcct 235  Q
    |||||||||||| ||||||||||| |||| |||||| ||||| ||||||||| |||||||||||||||||||    
T  14044535 attttatagagtatgggcaaaaaaattatcgcaaaatgttacctccttcctgagaataatttcacatttcct 14044464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 164 - 237
Target Start/End: Original strand, 11826953 - 11827026
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctac 237  Q
    ||||||||||| || ||||||||| |||| | |||| ||||||||||||||| |||||||||||||||||||||    
T  11826953 attttatagagcctaggcaaaaaaattatcgtaaaatgttacttccttcctgcgaataatttcacatttcctac 11827026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 10058727 - 10058676
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctg 215  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  10058727 attttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctg 10058676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 276 - 339
Target Start/End: Original strand, 31929048 - 31929111
Alignment:
Q  276 ggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatcc 339  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||  |||||||    
T  31929048 ggaacctaaatccttggcaaaatttgcaggaaatgtgtttcttgcagaatttacaataaaatcc 31929111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 168 - 262
Target Start/End: Complemental strand, 49745263 - 49745168
Alignment:
Q  168 tatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcaca-tttcctacagataatttcacatttcctacggat 262  Q
    ||||||||||||| ||||||||||| | |||| ||||| ||||||||| ||||||||| ||| ||| || | |||||||||||||||||| |||||    
T  49745263 tatagagtctggggaaaaaatttatcgtaaaatgttacgtccttcctgcgaataattttacatttttctgcggataatttcacatttcctgcggat 49745168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 276 - 367
Target Start/End: Complemental strand, 52373837 - 52373746
Alignment:
Q  276 ggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagtaatg 367  Q
    ||||||||||||| || |||||| |||| |||||  ||||  |||||||||||||||||||||  ||||||||| ||||| |||||||||||    
T  52373837 ggaacctaaatccctgacaaaatctgcaagaaatacgttttctgcggaatttacacaaaaatctgcagaaaaagttaaaagttctagtaatg 52373746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 320 - 376
Target Start/End: Complemental strand, 32005969 - 32005913
Alignment:
Q  320 cggaatttacacaaaaatccacagaaaaagctaaaaattctagtaatggttgggctt 376  Q
    |||||||||||||||||||| ||| ||||||||||||||||| ||||||| ||||||    
T  32005969 cggaatttacacaaaaatccgcaggaaaagctaaaaattctaataatggtagggctt 32005913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 321 - 376
Target Start/End: Complemental strand, 1585763 - 1585708
Alignment:
Q  321 ggaatttacacaaaaatccacagaaaaagctaaaaattctagtaatggttgggctt 376  Q
    ||||||||||||||||||  ||| ||||||||||||||||||||||||| ||||||    
T  1585763 ggaatttacacaaaaatctgcaggaaaagctaaaaattctagtaatggtagggctt 1585708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 276 - 339
Target Start/End: Original strand, 2521948 - 2522011
Alignment:
Q  276 ggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatcc 339  Q
    ||||||||||||||||  ||||| | ||||||||||||||| |||||| |||||||||||||||    
T  2521948 ggaacctaaatccttgataaaatctacaggaaatgtgtttcctgcggactttacacaaaaatcc 2522011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 31364325 - 31364274
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctg 215  Q
    |||||||||||  |||||||||||||||| ||||||||||||||||||||||    
T  31364325 attttatagagcatgggcaaaaaatttatcgcaaaacgttacttccttcctg 31364274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 283 - 337
Target Start/End: Complemental strand, 14044449 - 14044395
Alignment:
Q  283 aaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaat 337  Q
    ||||||| |||||||| ||||||||||||||||| ||||||||||||| ||||||    
T  14044449 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacataaaaat 14044395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 283 - 335
Target Start/End: Complemental strand, 9003659 - 9003607
Alignment:
Q  283 aaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaa 335  Q
    ||||||| |||||||| ||||||||||||||||| ||||||||||||| ||||    
T  9003659 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacataaaa 9003607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 283 - 335
Target Start/End: Complemental strand, 9694191 - 9694139
Alignment:
Q  283 aaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaa 335  Q
    ||||||| |||||||| ||||||||||||||||| ||||||||||||| ||||    
T  9694191 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacataaaa 9694139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 25237768 - 25237728
Alignment:
Q  195 caaaacgttacttccttcctgtgaataatttcacatttcct 235  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  25237768 caaaacgttacttccttcctgcgaataatttcacatttcct 25237728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 276 - 339
Target Start/End: Complemental strand, 36947617 - 36947554
Alignment:
Q  276 ggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatcc 339  Q
    ||||||||||| |||||||||||  ||||||||| |||||| ||| ||||||| ||||||||||    
T  36947617 ggaacctaaattcttggcaaaatccgcaggaaatatgtttcctgcagaatttatacaaaaatcc 36947554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 341 - 376
Target Start/End: Complemental strand, 2576193 - 2576158
Alignment:
Q  341 cagaaaaagctaaaaattctagtaatggttgggctt 376  Q
    |||||||||||||||||||| |||||||||||||||    
T  2576193 cagaaaaagctaaaaattcttgtaatggttgggctt 2576158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 235
Target Start/End: Complemental strand, 32828354 - 32828283
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcct 235  Q
    ||||||||| | |||||||||||| ||||  |||||  ||||||||||||||  |||||||| |||||||||    
T  32828354 attttatagggcctgggcaaaaaaattatcacaaaatattacttccttcctgcaaataattttacatttcct 32828283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 262
Target Start/End: Original strand, 43003165 - 43003208
Alignment:
Q  219 ataatttcacatttcctacagataatttcacatttcctacggat 262  Q
    ||||||||||||||||||| |||||||| ||||||||| |||||    
T  43003165 ataatttcacatttcctaccgataatttaacatttcctgcggat 43003208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 235
Target Start/End: Complemental strand, 9694270 - 9694206
Alignment:
Q  170 tagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcct 235  Q
    ||||| |||||||||||| |||| |||||| |||| ||||||| || ||||||||| |||||||||    
T  9694270 tagagcctgggcaaaaaa-ttatcgcaaaatgttatttccttcttgcgaataatttgacatttcct 9694206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 161; Significance: 9e-86; HSPs: 42)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 164 - 376
Target Start/End: Complemental strand, 30249175 - 30248963
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    |||||| |||||||||||||||||||||| |||||||||| ||| |||||||  ||||||||||||||| || |||||||||||||||||||||||||||    
T  30249175 attttacagagtctgggcaaaaaatttatcgcaaaacgttgctttcttcctgcaaataatttcacattttctgcagataatttcacatttcctacggata 30249076  T
Q  264 tatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagt 363  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  30249075 tatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcagaaaaagctaaaaattctagt 30248976  T
Q  364 aatggttgggctt 376  Q
    ||| |||||||||    
T  30248975 aatagttgggctt 30248963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 164 - 348
Target Start/End: Complemental strand, 35469113 - 35468929
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    ||||||||||| ||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||    
T  35469113 attttatagagcctgggcaaaaaatttatcgcaaaatgttacttccttcctgcgaataatttcacatttcctgcagataatttcacattttctacggata 35469014  T
Q  264 tatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaa 348  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  35469013 tatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcagaaaaa 35468929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 164 - 376
Target Start/End: Complemental strand, 34444177 - 34443964
Alignment:
Q  164 attttatagagtctgggcaaaaaat-ttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggat 262  Q
    |||||| |||| ||||||||||||  |||| |||||||||||||||||||||  ||||||||||||||||||| ||||||| ||||||||||||||||||    
T  34444177 attttagagagcctgggcaaaaaaaattatcgcaaaacgttacttccttcctacgaataatttcacatttcctgcagataaattcacatttcctacggat 34444078  T
Q  263 atatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctag 362  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||  |||| ||||||||||| |||||||||| ||| |||||||| |||||||||    
T  34444077 atatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgcatttcttgcggaatttagacaaaaatccgcaggaaaagctacaaattctag 34443978  T
Q  363 taatggttgggctt 376  Q
    ||||||| ||||||    
T  34443977 taatggtagggctt 34443964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 164 - 373
Target Start/End: Complemental strand, 15675523 - 15675302
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||| ||||||    
T  15675523 attttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgtagataatttcacatttccttcggata 15675424  T
Q  264 tatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaa------------aaatccacagaaaaagct 351  Q
    |||||||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||            |||||| ||||||||| |    
T  15675423 tatctttcctgcggaacttaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaactccgcaggtaaatccgcagaaaaagtt 15675324  T
Q  352 aaaaattctagtaatggttggg 373  Q
    ||||||||||||||||||||||    
T  15675323 aaaaattctagtaatggttggg 15675302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 164 - 308
Target Start/End: Original strand, 14832716 - 14832860
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  14832716 attttatagagtctgggcaaaaaatttatcgcaaaacattacttccttcctgcgaataatttcacatttcctgcagataatttcacatttcctacggata 14832815  T
Q  264 tatctttcttgcggaacctaaatccttggcaaaatatgcaggaaa 308  Q
    |||||||| ||||||| |||||||||||||||||| | |||||||    
T  14832816 tatctttcctgcggaatctaaatccttggcaaaatctacaggaaa 14832860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 168 - 308
Target Start/End: Complemental strand, 2476571 - 2476431
Alignment:
Q  168 tatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggatatatc 267  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  2476571 tatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctacgaataatttcacatttcctgcagataaattcacatttcctacggatatatc 2476472  T
Q  268 tttcttgcggaacctaaatccttggcaaaatatgcaggaaa 308  Q
    |||| |||||||||||||||||||  |||||  ||||||||    
T  2476471 tttcctgcggaacctaaatccttgataaaatccgcaggaaa 2476431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 164 - 339
Target Start/End: Complemental strand, 33007096 - 33006942
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||                     |||||||    
T  33007096 attttatagagtctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcct---------------------acggata 33007018  T
Q  264 tatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatcc 339  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||    
T  33007017 tatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctacggaatttacacaaaaatcc 33006942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 240 - 339
Target Start/End: Complemental strand, 34846501 - 34846402
Alignment:
Q  240 ataatttcacatttcctacggatatatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatcc 339  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||  ||||||||||||||||||||||    
T  34846501 ataatttcacatttcctacggatatatctttcatgcggaacctaaatccttggcaaaatctgtaggaaatgtgtttactgcggaatttacacaaaaatcc 34846402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 276 - 376
Target Start/End: Complemental strand, 15504014 - 15503914
Alignment:
Q  276 ggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagtaatggttgggct 375  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||| ||| |||||||||||||||||||||||||| ||||    
T  15504014 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcagaatttacacaaaaatccgcaggaaaagctaaaaattctagtaatggttaggct 15503915  T
Q  376 t 376  Q
    |    
T  15503914 t 15503914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 168 - 285
Target Start/End: Complemental strand, 15504155 - 15504038
Alignment:
Q  168 tatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggatatatc 267  Q
    ||||||| || | |||||||||||| |||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  15504155 tatagagcctcgacaaaaaatttatcgcaaaatgttacttccttcctgcgaataatttcacatttcctgcagataatttcacatttcctgcggatatatc 15504056  T
Q  268 tttcttgcggaacctaaa 285  Q
    ||||  ||||| ||||||    
T  15504055 tttcccgcggatcctaaa 15504038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 164 - 257
Target Start/End: Original strand, 1672392 - 1672485
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttccta 257  Q
    ||||||||||| |||||||||||| |||| |||||| ||||||||||||||| |||||||||||||||| || |||||||||||||||||||||    
T  1672392 attttatagagcctgggcaaaaaaattatcgcaaaatgttacttccttcctgcgaataatttcacattttctgcagataatttcacatttccta 1672485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 164 - 262
Target Start/End: Original strand, 12267288 - 12267385
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggat 262  Q
    ||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| || | ||||| |||||||||||| |||||    
T  12267288 attttatagagcctgggcaaaaagtttatcgcaaaacgttacttccttcctgtgaataatttcacattttctgcggataa-ttcacatttcctgcggat 12267385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 164 - 262
Target Start/End: Original strand, 36234460 - 36234558
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggat 262  Q
    |||||||||||| ||| |||||||||||| |||||| |||||||||||| || ||||||||||||||||| | |||||||||||||||||||| |||||    
T  36234460 attttatagagtttggacaaaaaatttatcgcaaaatgttacttccttcttgcgaataatttcacatttcttgcagataatttcacatttcctgcggat 36234558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 164 - 285
Target Start/End: Complemental strand, 6900977 - 6900856
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    |||| ||||||| || | ||||||||||| |||||| |||||||||||| || ||||||||||||||||||| | |||||||||||||||| | ||||||    
T  6900977 atttaatagagtatgagtaaaaaatttatcgcaaaatgttacttccttcatgcgaataatttcacatttcctgcggataatttcacatttcttgcggata 6900878  T
Q  264 tatctttcttgcggaacctaaa 285  Q
    ||||||||  ||||| ||||||    
T  6900877 tatctttcccgcggatcctaaa 6900856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 164 - 261
Target Start/End: Complemental strand, 16568001 - 16567904
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacgga 261  Q
    |||||||||||  ||||||||||| |||| |||||| ||||||||||||||| ||||||||||||||||||| | |||||||||||||||||| ||||    
T  16568001 attttatagagcttgggcaaaaaaattatcgcaaaatgttacttccttcctgggaataatttcacatttcctgcggataatttcacatttcctgcgga 16567904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 164 - 261
Target Start/End: Original strand, 32953573 - 32953670
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacgga 261  Q
    ||||||||||| ||| |||||||| |||| |||||| ||||||||||||||  ||||||||||||||||||| |||||||||||||||||||| ||||    
T  32953573 attttatagagcctgtgcaaaaaagttatcgcaaaatgttacttccttcctacgaataatttcacatttcctgcagataatttcacatttcctgcgga 32953670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 164 - 242
Target Start/End: Complemental strand, 21069231 - 21069153
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagata 242  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||  |||||||||||||||||| ||||||    
T  21069231 attttatagagtctgggcaaaaaatttatcgcaaaacgttatttccttcctggaaataatttcacatttcctgcagata 21069153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 164 - 261
Target Start/End: Original strand, 7161989 - 7162086
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacgga 261  Q
    ||||||||||| |||||||||||| |||| |||||| |||||||||||||||  ||||||||||||||||||   |||||||||||||||||| ||||    
T  7161989 attttatagagcctgggcaaaaaaattatcgcaaaatgttacttccttcctgcaaataatttcacatttcctgtggataatttcacatttcctgcgga 7162086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 276 - 339
Target Start/End: Original strand, 16667499 - 16667562
Alignment:
Q  276 ggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatcc 339  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  16667499 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatcc 16667562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 164 - 235
Target Start/End: Complemental strand, 37552124 - 37552053
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcct 235  Q
    ||||||||||| |||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||    
T  37552124 attttatagagcctgggcaaaaaaattattgcaaaatgttacttccttcctgcgaataatttcacatttcct 37552053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 164 - 235
Target Start/End: Complemental strand, 37654954 - 37654883
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcct 235  Q
    ||||||||||| |||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||    
T  37654954 attttatagagcctgggcaaaaaaattattgcaaaatgttacttccttcctgcgaataatttcacatttcct 37654883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 164 - 262
Target Start/End: Original strand, 13942658 - 13942755
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggat 262  Q
    ||||||||||| ||||| |||||| |||| |||||||||||||||||||||| |||||||||||||||||||   ||||| |||||||||||| |||||    
T  13942658 attttatagagcctgggtaaaaaaattatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgtggataa-ttcacatttcctgcggat 13942755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 182 - 256
Target Start/End: Complemental strand, 767490 - 767416
Alignment:
Q  182 aaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcct 256  Q
    |||||||||||||||||||||||||| ||||||| |||||||||| ||||| || | ||||||||||||||||||    
T  767490 aaaaaatttattgcaaaacgttactttcttcctgcgaataatttctcattttctgcggataatttcacatttcct 767416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 164 - 261
Target Start/End: Original strand, 43228548 - 43228645
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacgga 261  Q
    ||||||||||| |||||||||||| | || |||||| |||||| | |||||| ||||||||||| ||||| | |||||||||||||||||||| ||||    
T  43228548 attttatagagcctgggcaaaaaactaatcgcaaaatgttactcctttcctgcgaataatttcatatttcttgcagataatttcacatttcctgcgga 43228645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 301 - 376
Target Start/End: Complemental strand, 42989607 - 42989532
Alignment:
Q  301 gcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagtaatggttgggctt 376  Q
    |||||||||||||||| |||||||||||||||||||| | |||||||||| | || |||||||||||| |||||||    
T  42989607 gcaggaaatgtgtttcctgcggaatttacacaaaaattcgcagaaaaagcgagaagttctagtaatggctgggctt 42989532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 276 - 337
Target Start/End: Complemental strand, 21069107 - 21069046
Alignment:
Q  276 ggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaat 337  Q
    |||||||||||| |||||||||| ||||||||||||||||| |||||||| |||||||||||    
T  21069107 ggaacctaaatctttggcaaaatctgcaggaaatgtgtttcttgcggaatatacacaaaaat 21069046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 276 - 339
Target Start/End: Original strand, 17192675 - 17192738
Alignment:
Q  276 ggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatcc 339  Q
    |||||||||||||||| |||||| |||||||||||| |||| ||||||||| ||||||||||||    
T  17192675 ggaacctaaatccttgacaaaatctgcaggaaatgtatttcctgcggaattgacacaaaaatcc 17192738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 276 - 376
Target Start/End: Original strand, 36234588 - 36234688
Alignment:
Q  276 ggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagtaatggttgggct 375  Q
    ||||| |||| |||||| ||||| ||||||||||| ||||| ||| ||||||||| |||||||| ||  ||||| ||||| ||||| |||||| ||||||    
T  36234588 ggaacttaaacccttggtaaaatctgcaggaaatgcgtttcctgctgaatttacataaaaatccgcatgaaaagttaaaagttctaataatggctgggct 36234687  T
Q  376 t 376  Q
    |    
T  36234688 t 36234688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 276 - 339
Target Start/End: Complemental strand, 767380 - 767317
Alignment:
Q  276 ggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatcc 339  Q
    |||| |||||||||||||||||  || |||||||||||||| ||||||||||| ||||||||||    
T  767380 ggaatctaaatccttggcaaaacctgtaggaaatgtgtttcctgcggaatttatacaaaaatcc 767317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 34846556 - 34846505
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctg 215  Q
    ||||||||||| |||| |||||||||||| ||||||||||||||||||||||    
T  34846556 attttatagagcctggacaaaaaatttatcgcaaaacgttacttccttcctg 34846505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 278 - 368
Target Start/End: Original strand, 7159609 - 7159699
Alignment:
Q  278 aacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagtaatgg 368  Q
    ||||||||| |||||||||||  |||||||| ||||||| |||||||| ||||| |||||| |||| |||||| | |  ||||||||||||    
T  7159609 aacctaaattcttggcaaaatccgcaggaaacgtgtttcctgcggaatgtacaccaaaatcaacaggaaaagcgagaggttctagtaatgg 7159699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 283 - 339
Target Start/End: Original strand, 7162096 - 7162152
Alignment:
Q  283 aaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatcc 339  Q
    ||||||| |||||||| ||||||||||||||||| || |||||||||| ||||||||    
T  7162096 aaatcctaggcaaaatctgcaggaaatgtgtttcctgtggaatttacataaaaatcc 7162152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 159 - 235
Target Start/End: Complemental strand, 37779858 - 37779782
Alignment:
Q  159 catatattttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcct 235  Q
    |||| |||||||||||  || |||||||| |||| | |||| ||||||||||||| | |||||||||||||||||||    
T  37779858 cataaattttatagagcttgtgcaaaaaaattatcgtaaaatgttacttccttccagcgaataatttcacatttcct 37779782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 283 - 339
Target Start/End: Original strand, 43228655 - 43228711
Alignment:
Q  283 aaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatcc 339  Q
    ||||||| |||||||| ||||||||||||||||| ||||||||||||| ||| ||||    
T  43228655 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacataaacatcc 43228711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 281 - 339
Target Start/End: Original strand, 12267420 - 12267478
Alignment:
Q  281 ctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatcc 339  Q
    |||||| | ||||||||| | ||||||||||||||| ||||||||||||| ||||||||    
T  12267420 ctaaattcgtggcaaaatctacaggaaatgtgtttcttgcggaatttacataaaaatcc 12267478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 337
Target Start/End: Original strand, 32953680 - 32953734
Alignment:
Q  283 aaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaat 337  Q
    ||||||| |||||||| ||||||||||||||||| | ||||||||||| ||||||    
T  32953680 aaatcctaggcaaaatctgcaggaaatgtgtttcctacggaatttacataaaaat 32953734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 235
Target Start/End: Complemental strand, 37607651 - 37607575
Alignment:
Q  159 catatattttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcct 235  Q
    |||| |||||||||||  || |||||||| |||| | |||| ||||||||||||| |  ||||||||||||||||||    
T  37607651 cataaattttatagagcttgtgcaaaaaaattatcgtaaaatgttacttccttccagcaaataatttcacatttcct 37607575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 199
Target Start/End: Complemental strand, 42989708 - 42989673
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaa 199  Q
    |||||||||||||||| |||||||||||||||||||    
T  42989708 attttatagagtctggacaaaaaatttattgcaaaa 42989673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 285
Target Start/End: Original strand, 39605801 - 39605847
Alignment:
Q  239 gataatttcacatttcctacggatatatctttcttgcggaacctaaa 285  Q
    ||||||| |||||||||| |||||||||||||| |||||| ||||||    
T  39605801 gataattgcacatttcctgcggatatatctttcctgcggatcctaaa 39605847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 378
Target Start/End: Complemental strand, 21069022 - 21068993
Alignment:
Q  349 gctaaaaattctagtaatggttgggcttac 378  Q
    ||||||||||||||||||||||||||||||    
T  21069022 gctaaaaattctagtaatggttgggcttac 21068993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 369
Target Start/End: Complemental strand, 2476445 - 2476409
Alignment:
Q  333 aaaatccacagaaaaagctaaaaattctagtaatggt 369  Q
    ||||||| ||| |||||||||||||||||||||||||    
T  2476445 aaaatccgcaggaaaagctaaaaattctagtaatggt 2476409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 285
Target Start/End: Original strand, 17192603 - 17192651
Alignment:
Q  237 cagataatttcacatttcctacggatatatctttcttgcggaacctaaa 285  Q
    ||||||||||||||||| || || ||||||||||| |||||| ||||||    
T  17192603 cagataatttcacattttctgcgaatatatctttcctgcggatcctaaa 17192651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 161; Significance: 9e-86; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 164 - 376
Target Start/End: Original strand, 41114774 - 41114986
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    |||||||||||  |||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||    
T  41114774 attttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcatgcgaataatttcacatttcctgcagataatttcacatttcctacggata 41114873  T
Q  264 tatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagt 363  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||| ||| |||| ||||||||||||||    
T  41114874 tatctttcttgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacgaaaatccgcaggaaaaactaaaaattctagt 41114973  T
Q  364 aatggttgggctt 376  Q
    |||||||| ||||    
T  41114974 aatggttgagctt 41114986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 166 - 376
Target Start/End: Original strand, 18299049 - 18299259
Alignment:
Q  166 tttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggatata 265  Q
    |||||| ||| |||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  18299049 tttataaagtttgggcaaaaaatttatcgtaaaacgttacttccttcctgcgaataatttcacatttcctgcagataatttcacatttcctacagatata 18299148  T
Q  266 tctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagtaa 365  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||  ||||| |||||||||||||||    
T  18299149 tctttcttgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaagaaaagttaaaaattctagtaa 18299248  T
Q  366 tggttgggctt 376  Q
    |||||||||||    
T  18299249 tggttgggctt 18299259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 164 - 376
Target Start/End: Original strand, 6799790 - 6800002
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    ||||||||||| |||||||||   |||||  |||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  6799790 attttatagagcctgggcaaattttttatcacaaaacgttagttccttcctgcgaataatttcacatttcctgcagataatttcacatttcctacggata 6799889  T
Q  264 tatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagt 363  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||| ||||| |||||||||||||    
T  6799890 tatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaggaaaagttaaaaattctagt 6799989  T
Q  364 aatggttgggctt 376  Q
    |||||||| ||||    
T  6799990 aatggttgagctt 6800002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 164 - 376
Target Start/End: Complemental strand, 13203978 - 13203766
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    |||||||||||  || ||||||||||||| |||||| ||||||||||||| | |||||||||||||||| |  |||||||||||||||||||||||||||    
T  13203978 attttatagagcatgagcaaaaaatttatcgcaaaatgttacttccttccagcgaataatttcacattttccgcagataatttcacatttcctacggata 13203879  T
Q  264 tatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagt 363  Q
    | |||||| |||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||| ||| |||||||||||||||||||    
T  13203878 tctctttcctgcggaacctaaatccttggcaaaatctgcaggaaacgtgtttcctgcggaatttacacaaaaatccgcaggaaaagctaaaaattctagt 13203779  T
Q  364 aatggttgggctt 376  Q
    |||||||||||||    
T  13203778 aatggttgggctt 13203766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 164 - 376
Target Start/End: Complemental strand, 29257577 - 29257365
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||| ||||||| |||||||||||||||||||    
T  29257577 attttatagagtctgggcaaaaaatttatcgcaaaacgttacttcctttctgcgaataatttcacatttcctgcagataagttcacatttcctacggata 29257478  T
Q  264 tatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagt 363  Q
    |||||||| |||||||| ||||| ||||||||||| ||||||||||||||||| |||| |||||||||||||||||  || ||||| |||||||| || |    
T  29257477 tatctttcctgcggaacgtaaattcttggcaaaatctgcaggaaatgtgtttcctgcgaaatttacacaaaaatccgaaggaaaaggtaaaaattttaat 29257378  T
Q  364 aatggttgggctt 376  Q
    |||| ||||||||    
T  29257377 aatgattgggctt 29257365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 240 - 376
Target Start/End: Original strand, 22572681 - 22572817
Alignment:
Q  240 ataatttcacatttcctacggatatatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatcc 339  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| |    
T  22572681 ataatttcacatttcctatgaatatatctttcttgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctggggaatttacacaaaaattc 22572780  T
Q  340 acagaaaaagctaaaaattctagtaatggttgggctt 376  Q
     ||| |||||||||| ||||||||||||||| |||||    
T  22572781 gcaggaaaagctaaatattctagtaatggttaggctt 22572817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 164 - 285
Target Start/End: Original strand, 303996 - 304117
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    |||||||||||| ||||||||||| |||| ||||||||||||||| |  ||| ||||||||||||||||||| |||||||||||||||||||| ||||||    
T  303996 attttatagagtttgggcaaaaaaattatcgcaaaacgttacttcttatctgcgaataatttcacatttcctgcagataatttcacatttcctgcggata 304095  T
Q  264 tatctttcttgcggaacctaaa 285  Q
    |||||||| |||||| ||||||    
T  304096 tatctttcctgcggatcctaaa 304117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 164 - 263
Target Start/End: Complemental strand, 41010723 - 41010624
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    |||||||||||| ||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||    
T  41010723 attttatagagtgtggacaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgcagaaaatttcacatttcctacggata 41010624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 240 - 376
Target Start/End: Complemental strand, 2475962 - 2475821
Alignment:
Q  240 ataatttcacatttcctacggatatatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttc-----gtgcggaatttacacaaa 334  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||| |||||||||| |||| |||||| |||||     ||||||||||||||||||    
T  2475962 ataatttcacatttcctgcgaatatatctttcctgcggaacctatatcattggcaaaatctgcaagaaatgagtttcatgttgtgcggaatttacacaaa 2475863  T
Q  335 aatccacagaaaaagctaaaaattctagtaatggttgggctt 376  Q
    ||||| ||  | ||||||||| |||||||||||| |||||||    
T  2475862 aatccgcaagacaagctaaaagttctagtaatggctgggctt 2475821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 164 - 368
Target Start/End: Complemental strand, 17149007 - 17148788
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggat- 262  Q
    ||||||| |||  ||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||| |||||     
T  17149007 attttattgagcttgggcaaaaaatttatctcaaaacgttacttccttcctgcgaataatttcacatttcctgcagataattccacatttcctgcggatc 17148908  T
Q  263 ---atatctt----tcttgc--------ggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaa 347  Q
       | ||| |    | || |        ||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||| |||  ||    
T  17148907 ctaaaatcctatggtattccctcacctgggaacctaaatcctt-gcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaggtaa 17148809  T
Q  348 agctaaaaattctagtaatgg 368  Q
    | |||||| || |||||||||    
T  17148808 acctaaaagttatagtaatgg 17148788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 164 - 235
Target Start/End: Complemental strand, 2476017 - 2475946
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcct 235  Q
    ||||||||||| |||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||    
T  2476017 attttatagagcctgggcaaaaaaattatcgcaaaacgttacttccttcctgcgaataatttcacatttcct 2475946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 164 - 235
Target Start/End: Complemental strand, 17249541 - 17249470
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcct 235  Q
    |||||||||||||||||||||| |||||| |||||||||||||| ||||||| |||||||||||||||||||    
T  17249541 attttatagagtctgggcaaaatatttatagcaaaacgttactttcttcctgcgaataatttcacatttcct 17249470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 279 - 368
Target Start/End: Complemental strand, 12000619 - 12000529
Alignment:
Q  279 acctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaa-atccacagaaaaagctaaaaattctagtaatgg 368  Q
    ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||| |||| ||| ||||||||||| ||||| ||||||    
T  12000619 acctatatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaacatccgcaggaaaagctaaaacttctactaatgg 12000529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 168 - 285
Target Start/End: Complemental strand, 12000764 - 12000646
Alignment:
Q  168 tatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacattt-cctacagataatttcacatttcctacggatatat 266  Q
    ||||||| || ||||||||| |||| |||||| ||||| ||||||||| ||||||||| |||||| ||  | |||||||||||||||||| |||||||||    
T  12000764 tatagagcctaggcaaaaaaattatcgcaaaatgttacgtccttcctgcgaataattttacattttccggcggataatttcacatttcctgcggatatat 12000665  T
Q  267 ctttcttgcggaacctaaa 285  Q
    ||||| |||||| ||||||    
T  12000664 ctttcctgcggatcctaaa 12000646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 276 - 366
Target Start/End: Complemental strand, 41010574 - 41010484
Alignment:
Q  276 ggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagtaat 366  Q
    ||||||||||||||| | ||||| ||||||||||||||||| ||| ||||||| |||||||||| |||||||| |||||| ||||||||||    
T  41010574 ggaacctaaatccttagtaaaatctgcaggaaatgtgtttcctgcagaatttatacaaaaatccgcagaaaaaactaaaagttctagtaat 41010484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 276 - 368
Target Start/End: Original strand, 304141 - 304231
Alignment:
Q  276 ggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagtaatgg 368  Q
    ||||||||||||||||||||||| |||| |||||||||||| |||| |||||||||  || ||| ||| ||||||||||| ||||||||||||    
T  304141 ggaacctaaatccttggcaaaatctgcaagaaatgtgtttcctgcgaaatttacac--aactccgcaggaaaagctaaaagttctagtaatgg 304231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 279 - 335
Target Start/End: Complemental strand, 15651303 - 15651247
Alignment:
Q  279 acctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaa 335  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  15651303 acctaaatccttggcaaaatacgcaggaaatgtgtttcctgcggaatttacacaaaa 15651247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 164 - 236
Target Start/End: Original strand, 22572626 - 22572698
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttccta 236  Q
    |||||||| || |||| |||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||    
T  22572626 attttataaagcctggacaaaaaatttatcgcaaaacgttactttcttcctgcgaataatttcacatttccta 22572698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 164 - 235
Target Start/End: Original strand, 45444357 - 45444429
Alignment:
Q  164 attttatagagtctgggcaaaa-aatttattgcaaaacgttacttccttcctgtgaataatttcacatttcct 235  Q
    |||| ||||||||||| ||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  45444357 atttcatagagtctggacaaaaaaatttattgcaaaacattacttccttcctgcgaataatttcacatttcct 45444429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 277 - 343
Target Start/End: Complemental strand, 17249416 - 17249350
Alignment:
Q  277 gaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacag 343  Q
    |||||||||||||||||||||| | || |||||||||||| || |||||||||||||||||||||||    
T  17249416 gaacctaaatccttggcaaaatctacaagaaatgtgtttcctgtggaatttacacaaaaatccacag 17249350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 183 - 271
Target Start/End: Complemental strand, 15651433 - 15651344
Alignment:
Q  183 aaaaatttattgcaaaacgttacttccttcctgtgaataatttcacattt-cctacagataatttcacatttcctacggatatatctttc 271  Q
    |||||||||| |||||| ||||| ||||||||| ||||||||| |||||| ||| | ||||||||||||||||||  |||||||||||||    
T  15651433 aaaaatttatcgcaaaatgttacgtccttcctgcgaataattttacattttcctgcggataatttcacatttcctggggatatatctttc 15651344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 276 - 344
Target Start/End: Complemental strand, 25563034 - 25562966
Alignment:
Q  276 ggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacaga 344  Q
    ||||||||||||||||||||||| |||||||||||| |||| ||||||||||||| || ||||| ||||    
T  25563034 ggaacctaaatccttggcaaaatctgcaggaaatgtatttcctgcggaatttacaaaacaatccgcaga 25562966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 256
Target Start/End: Complemental strand, 25563159 - 25563091
Alignment:
Q  188 tttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcct 256  Q
    ||||| |||||||||||||||||| |||  |||||||||| ||||||| ||||||||||||||||||||    
T  25563159 tttatcgcaaaacgttacttcctttctgcaaataatttcatatttcctgcagataatttcacatttcct 25563091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 164 - 235
Target Start/End: Original strand, 33909251 - 33909322
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcct 235  Q
    ||||||||||||||||||||||| ||||| |||||| ||||| |||||| ||  ||||||||||||||||||    
T  33909251 attttatagagtctgggcaaaaactttatcgcaaaatgttacatccttcatgcaaataatttcacatttcct 33909322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 277 - 367
Target Start/End: Original strand, 33909359 - 33909449
Alignment:
Q  277 gaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagtaatg 367  Q
    ||||||||||| |||| ||||| |||||||||||| | || ||| |||||| ||||||||| | ||| |||| ||||||||||||||||||    
T  33909359 gaacctaaatctttggaaaaatctgcaggaaatgtttctcctgcagaattttcacaaaaattcgcaggaaaaactaaaaattctagtaatg 33909449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 367
Target Start/End: Complemental strand, 15429276 - 15429186
Alignment:
Q  277 gaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagtaatg 367  Q
    ||||||||||||||| ||||||   |||||||  |||||| |||||||||||||| |||||||  ||||||||| | |  |||||||||||    
T  15429276 gaacctaaatccttgacaaaatccacaggaaacatgtttcctgcggaatttacaccaaaatccgaagaaaaagcgagaggttctagtaatg 15429186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 41010645 - 41010604
Alignment:
Q  221 aatttcacatttcctacagataatttcacatttcctacggat 262  Q
    ||||||||||||||||| |||||||||||||||||| |||||    
T  41010645 aatttcacatttcctacggataatttcacatttcctgcggat 41010604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 16220933 - 16221001
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacattt 232  Q
    ||||||||||| |||||||||||| |||| ||||||||||| |||||| |||   |||||| |||||||    
T  16220933 attttatagagcctgggcaaaaaaattatcgcaaaacgttatttcctttctgcatataattgcacattt 16221001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 338
Target Start/End: Complemental strand, 34756790 - 34756728
Alignment:
Q  276 ggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatc 338  Q
    |||||||||||||||||||||||   ||||||| ||| ||| | |||||||||||| ||||||    
T  34756790 ggaacctaaatccttggcaaaatccacaggaaacgtgattcctacggaatttacaccaaaatc 34756728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 285
Target Start/End: Complemental strand, 17249486 - 17249441
Alignment:
Q  240 ataatttcacatttcctacggatatatctttcttgcggaacctaaa 285  Q
    ||||||||||||||||| |||||||||||||  |||||| ||||||    
T  17249486 ataatttcacatttcctgcggatatatctttaatgcggatcctaaa 17249441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 153; Significance: 5e-81; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 164 - 376
Target Start/End: Original strand, 34248918 - 34249130
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||| |||||||||||| |||| |||||||||    
T  34248918 attttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctgcggataatttcacatttcctgcagataatttcatattttctacggata 34249017  T
Q  264 tatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagt 363  Q
    |||||||| || |||||||||| |||||||||||| ||||||||||||||||| ||| |||||||||||||||||| ||| |||||||||||||||||||    
T  34249018 tatctttcctgtggaacctaaacccttggcaaaatctgcaggaaatgtgtttcctgcagaatttacacaaaaatccgcaggaaaagctaaaaattctagt 34249117  T
Q  364 aatggttgggctt 376  Q
    |||||||||||||    
T  34249118 aatggttgggctt 34249130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 164 - 376
Target Start/End: Original strand, 23663664 - 23663876
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    ||||||||||| ||||  ||||||||||| ||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||| |||||||||    
T  23663664 attttatagagcctggataaaaaatttatcgcaaaacgttacttcattcctgcgaataatttcacatttcctgcagataatttcacattttctacggata 23663763  T
Q  264 tatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagt 363  Q
    |||||||||| |||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||| |||     
T  23663764 tatctttcttacggaacataaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaggaaaagctaaaaattatagc 23663863  T
Q  364 aatggttgggctt 376  Q
    |||||||||||||    
T  23663864 aatggttgggctt 23663876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 164 - 338
Target Start/End: Complemental strand, 9696266 - 9696092
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  9696266 attttatagagtctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgcagataatttcacatttcctacggata 9696167  T
Q  264 tatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatc 338  Q
    |||||||| |||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||    
T  9696166 tatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatatgtttcctgcggaatttacacaaaaatc 9696092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 164 - 339
Target Start/End: Complemental strand, 2941433 - 2941258
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||    
T  2941433 attttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctacgaataatttcacatttcctgcagataatttcacatttcctacggata 2941334  T
Q  264 tatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatcc 339  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||| |||||||    
T  2941333 tatctttcatgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcgaaatttacactaaaatcc 2941258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 164 - 343
Target Start/End: Original strand, 9046820 - 9046999
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    |||||||||||| |||||||||||||||| | ||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||    
T  9046820 attttatagagtttgggcaaaaaatttatcggaaaacgttatttccttcctttgaataatttcacatttcctgcagataatttcacatttcctacagata 9046919  T
Q  264 tatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacag 343  Q
    ||| |||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||| |||||||||||| ||||    
T  9046920 tatatttcttgcggaacctaaatccttgacaaaatctgcaggaaatgtgtttcctgcggaatctacacaaaaatctacag 9046999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 164 - 373
Target Start/End: Original strand, 10397714 - 10397906
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||          
T  10397714 attttatagagtctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttccaacagataatttcacatttccta------ 10397807  T
Q  264 tatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagt 363  Q
               |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||| |||||||||||||||| ||    
T  10397808 -----------cggaacctaaatccttggcaaaatatgcaggaaatgtgtttcctgcggaatttacacaacaatccgcaggaaaagctaaaaattctcgt 10397896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 164 - 339
Target Start/End: Complemental strand, 15122254 - 15122079
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    |||||||||||| |||||||||||||||| |||||||||||||| ||| ||| |||||||||||||||| || |||||||||| ||||||||||||||||    
T  15122254 attttatagagtttgggcaaaaaatttatcgcaaaacgttactttctttctgcgaataatttcacattttctgcagataattttacatttcctacggata 15122155  T
Q  264 tatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatcc 339  Q
    |||||||| |||||||| ||||||||||||||||| ||||||||||||||||| ||| ||||||| ||| ||||||    
T  15122154 tatctttcctgcggaacgtaaatccttggcaaaatctgcaggaaatgtgtttcctgcagaatttagacacaaatcc 15122079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 164 - 339
Target Start/End: Complemental strand, 15529157 - 15528982
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    ||||||||||| || |||||||||||||| ||||||| ||||||| |||||  ||||||||||||||||||| ||||||| |||||||||||||| ||||    
T  15529157 attttatagagcctaggcaaaaaatttatcgcaaaacattacttctttcctacgaataatttcacatttcctgcagataaattcacatttcctacagata 15529058  T
Q  264 tatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatcc 339  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||   |||| ||||||||||||||||| ||||    
T  15529057 tatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatacatttcctgcggaatttacacaaacatcc 15528982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 240 - 373
Target Start/End: Original strand, 1781003 - 1781136
Alignment:
Q  240 ataatttcacatttcctacggatatatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatcc 339  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||    
T  1781003 ataatttcacatttcctacggatatatcttttatgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgaggaatttacacaaaaatcc 1781102  T
Q  340 acagaaaaagctaaaaattctagtaatggttggg 373  Q
    |||| ||||||||||| || ||||||||||||||    
T  1781103 acaggaaaagctaaaatttatagtaatggttggg 1781136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 164 - 285
Target Start/End: Original strand, 31188217 - 31188338
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    ||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||| ||  |||||    
T  31188217 attttatagagcctgggcaaaaaaattatcgcaaaacgttacttccttcctgtgaataatttcacattttctacggataatttcaaattttctgaggata 31188316  T
Q  264 tatctttcttgcggaacctaaa 285  Q
    |||||||| |||||| ||||||    
T  31188317 tatctttcctgcggatcctaaa 31188338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 164 - 285
Target Start/End: Original strand, 2836072 - 2836193
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    ||||||||||||||| |||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||   ||||    
T  2836072 attttatagagtctgagcaaaaaatttattacaagacgttacttccttcctgcgaataatttcacatttcctgcagataatttcacatttcctgtcgata 2836171  T
Q  264 tatctttcttgcggaacctaaa 285  Q
    ||  |||| |||||| ||||||    
T  2836172 tacttttcctgcggatcctaaa 2836193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 164 - 368
Target Start/End: Original strand, 14938827 - 14939019
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    |||||||||||  ||||||||||| |||| |||||| ||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||| ||      
T  14938827 attttatagagcttgggcaaaaaaattatcgcaaaatgttactttcttcctgggaataatttcacatttcctgcagataatttcacatttcctacaga-- 14938924  T
Q  264 tatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagt 363  Q
     |||     ||| |     |||||||  ||||||| ||||||||||||||||| ||||||||||||| |||||||  || ||||| |||||| |||||||    
T  14938925 -atc-----tgcag----gaaatcctaagcaaaatctgcaggaaatgtgtttcctgcggaatttacataaaaatcagcataaaaaactaaaagttctagt 14939014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 164 - 237
Target Start/End: Original strand, 1780948 - 1781021
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctac 237  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  1780948 attttatagagtctgggcataaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctac 1781021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 164 - 261
Target Start/End: Original strand, 28614309 - 28614406
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacgga 261  Q
    ||||||||||| ||| |||||||| |||| |||||| ||||||||||||||| |||||||||||||||| || | |||||||||||||||||||||||    
T  28614309 attttatagagcctgtgcaaaaaaattatcgcaaaatgttacttccttcctgcgaataatttcacattttctgctgataatttcacatttcctacgga 28614406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 276 - 368
Target Start/End: Complemental strand, 339434 - 339342
Alignment:
Q  276 ggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagtaatgg 368  Q
    ||||||||||||||||| ||||| |||||||||||| |||| | |||||||||||||||||||||||| ||||||||||| || |||||||||    
T  339434 ggaacctaaatccttggtaaaatctgcaggaaatgtatttcctacggaatttacacaaaaatccacaggaaaagctaaaagttttagtaatgg 339342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 164 - 278
Target Start/End: Original strand, 31200061 - 31200176
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgc-aaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggat 262  Q
    |||||||||||  ||||||||||| |||| || |||||||||||||||||||| |||||||||||||||| | || |||||||||||||||||| | |||    
T  31200061 attttatagagcatgggcaaaaaaattatcgctaaaacgttacttccttcctgcgaataatttcacattttccacggataatttcacatttcctgcagat 31200160  T
Q  263 atatctttcttgcgga 278  Q
    ||||||| | ||||||    
T  31200161 atatcttacctgcgga 31200176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 164 - 253
Target Start/End: Complemental strand, 2960883 - 2960794
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacattt 253  Q
    ||||||||||| ||| || ||||| ||||||||||| |||||||||||| || ||||||||||||||||||| | |||||||||||||||    
T  2960883 attttatagagcctgagcgaaaaaattattgcaaaatgttacttccttcttgcgaataatttcacatttcctgcggataatttcacattt 2960794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 164 - 262
Target Start/End: Complemental strand, 34189009 - 34188911
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggat 262  Q
    ||||| ||||| ||| ||||||||||| | |||||||||||| ||  || || ||||||||||||||||||| | |||||||||||||||||| |||||    
T  34189009 attttctagagcctgagcaaaaaatttgtcgcaaaacgttacctctctcttgcgaataatttcacatttcctgcggataatttcacatttcctgcggat 34188911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 276 - 344
Target Start/End: Original strand, 2836217 - 2836285
Alignment:
Q  276 ggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacaga 344  Q
    |||||||||||||||| |||||| |||||||||||| |||| |||||||||||||| ||||||| ||||    
T  2836217 ggaacctaaatccttgacaaaatctgcaggaaatgtatttcctgcggaatttacacgaaaatccgcaga 2836285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 164 - 235
Target Start/End: Complemental strand, 339549 - 339478
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcct 235  Q
    |||||||||||  |||||||||||||||| |||||| |||||||||||||||  | ||||||||||||||||    
T  339549 attttatagagcttgggcaaaaaatttatcgcaaaatgttacttccttcctgcaattaatttcacatttcct 339478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 283 - 364
Target Start/End: Complemental strand, 2960776 - 2960695
Alignment:
Q  283 aaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagta 364  Q
    ||||||| ||||||||  |||||||||||||||  |||| |||||||| || ||||| ||| ||||||||||| ||||||||    
T  2960776 aaatcctgggcaaaattagcaggaaatgtgttttctgcgaaatttacataataatccgcaggaaaagctaaaagttctagta 2960695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 378
Target Start/End: Original strand, 9047013 - 9047046
Alignment:
Q  345 aaaagctaaaaattctagtaatggttgggcttac 378  Q
    |||||||||||||||||||||||||||| |||||    
T  9047013 aaaagctaaaaattctagtaatggttggacttac 9047046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 149; Significance: 1e-78; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 164 - 376
Target Start/End: Complemental strand, 25007674 - 25007462
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||| ||||||| |||||||||||||||||||    
T  25007674 attttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctacgaataatttcacatttcctgcagataaattcacatttcctacggata 25007575  T
Q  264 tatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagt 363  Q
    |||||||| ||| |||||||||||||||||||||| ||||||||||   |||| |||||||||||||||||||||| ||| |||||||||||||||||||    
T  25007574 tatctttcctgcagaacctaaatccttggcaaaatctgcaggaaatacatttcttgcggaatttacacaaaaatccgcaggaaaagctaaaaattctagt 25007475  T
Q  364 aatggttgggctt 376  Q
    |||||| ||||||    
T  25007474 aatggtagggctt 25007462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 164 - 376
Target Start/End: Original strand, 25011442 - 25011653
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    |||||||||| ||||||||||||| |||| ||||||||||||||||||| || |||||||||  ||||| || |||||||||||||||||||||||||||    
T  25011442 attttatagaatctgggcaaaaaaattatcgcaaaacgttacttccttcatgcgaataattttgcattttctgcagataatttcacatttcctacggata 25011541  T
Q  264 tatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagt 363  Q
    ||||||||| ||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||    
T  25011542 tatctttct-gcggaacctaaatccttggcaaaatctgcagaaaatgtgtttcctgcggaatttacacaaaaatccgcaggaaaagctaaaaattctagt 25011640  T
Q  364 aatggttgggctt 376  Q
    |||||||||||||    
T  25011641 aatggttgggctt 25011653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 164 - 376
Target Start/End: Original strand, 27583922 - 27584130
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    ||||||||||| ||| ||||||||||||| ||||||||||||||||| |    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  27583922 attttatagagcctgagcaaaaaatttatcgcaaaacgttacttcctgc----gaataatttcacatttcctgcagataatttcacatttcctacggata 27584017  T
Q  264 tatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagt 363  Q
    |||||||| || ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||    
T  27584018 tatctttcctggggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaggaaaagctaaaaattctagt 27584117  T
Q  364 aatggttgggctt 376  Q
    ||||||| |||||    
T  27584118 aatggtttggctt 27584130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 164 - 369
Target Start/End: Original strand, 37153895 - 37154100
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||| ||||||| |||||||||||||||||||    
T  37153895 attttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctacgaataatttcacatttcctgcagataaattcacatttcctacggata 37153994  T
Q  264 tatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagt 363  Q
    |||||||| || ||||||||||||||||||||||| ||||||||||   |||| |||||||||||||||||||||| ||| |||||||||||||||||||    
T  37153995 tatctttcctgtggaacctaaatccttggcaaaatctgcaggaaatacatttcctgcggaatttacacaaaaatccgcaggaaaagctaaaaattctagt 37154094  T
Q  364 aatggt 369  Q
    ||||||    
T  37154095 aatggt 37154100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 164 - 376
Target Start/End: Complemental strand, 44305622 - 44305410
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    ||||||||||| |||||||||||| |||| |||||||||||||||||||||  ||||||||||||||||||| ||||||| |||||||||||||||||||    
T  44305622 attttatagagcctgggcaaaaaaattatcgcaaaacgttacttccttcctacgaataatttcacatttcctgcagataaattcacatttcctacggata 44305523  T
Q  264 tatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagt 363  Q
    |||||||| || ||||||||||||||||||||||| ||||||||||   |||| |||||||||||||||||||||| ||| |||||||||||||||||||    
T  44305522 tatctttcctgtggaacctaaatccttggcaaaatctgcaggaaatacatttcctgcggaatttacacaaaaatccgcaggaaaagctaaaaattctagt 44305423  T
Q  364 aatggttgggctt 376  Q
    ||| || ||||||    
T  44305422 aattgtagggctt 44305410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 164 - 335
Target Start/End: Complemental strand, 14727540 - 14727369
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    ||||||||||| |||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||    
T  14727540 attttatagagcctgggcaaaaaaattatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgcagataatttcacatttcctacagata 14727441  T
Q  264 tatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaa 335  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  14727440 tatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaa 14727369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 164 - 376
Target Start/End: Complemental strand, 27460888 - 27460694
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    ||||||||||| ||||| ||||||||||| ||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||      
T  27460888 attttatagagcctggg-aaaaaatttatcgcaaaacattacttccttcctgcgaataatttcacatttcctgcagataatttcacatttcctacgga-- 27460792  T
Q  264 tatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagt 363  Q
                   |||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||| ||  |||||||||||||||||||    
T  27460791 ---------------acctaaatccttggcaaaatctgcaggaaatgtgtttccttcggaatttacacaaaaatccgcaagaaaagctaaaaattctagt 27460707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 164 - 308
Target Start/End: Original strand, 1428324 - 1428468
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    ||||||||||| ||||||||||||||||  |||||||||||||||||||||  |||||||||||||||| || ||||||  |||||||||||||||||||    
T  1428324 attttatagagcctgggcaaaaaatttaccgcaaaacgttacttccttcctacgaataatttcacattttctgcagatagattcacatttcctacggata 1428423  T
Q  264 tatctttcttgcggaacctaaatccttggcaaaatatgcaggaaa 308  Q
    |||||||| |||||||||||||||||||||||||| |||||||||    
T  1428424 tatctttcctgcggaacctaaatccttggcaaaatctgcaggaaa 1428468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 240 - 338
Target Start/End: Original strand, 31844601 - 31844699
Alignment:
Q  240 ataatttcacatttcctacggatatatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatc 338  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  31844601 ataatttcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatc 31844699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 231 - 339
Target Start/End: Complemental strand, 6331829 - 6331721
Alignment:
Q  231 ttcctacagataatttcacatttcctacggatatatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttaca 330  Q
    ||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||| |||||||||||||    
T  6331829 ttccttcaaataatttcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcggaatttaca 6331730  T
Q  331 caaaaatcc 339  Q
    |||||||||    
T  6331729 caaaaatcc 6331721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 276 - 371
Target Start/End: Complemental strand, 24646151 - 24646056
Alignment:
Q  276 ggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagtaatggttg 371  Q
    ||||||||||||||||||||||| ||||||||||||||||| | |||||| ||||||||||||||||| ||||||||||| |||||||||||||||    
T  24646151 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctacggaatgtacacaaaaatccacaggaaaagctaaaagttctagtaatggttg 24646056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 240 - 339
Target Start/End: Complemental strand, 8239427 - 8239326
Alignment:
Q  240 ataatttcacatttcctacggatatatctttcttgcggaacctaaatccttggcaaaatatgcaggaa--atgtgtttcgtgcggaatttacacaaaaat 337  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||  || | |||| ||||||||||||||||||||    
T  8239427 ataatttcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatatatatttcctgcggaatttacacaaaaat 8239328  T
Q  338 cc 339  Q
    ||    
T  8239327 cc 8239326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 164 - 285
Target Start/End: Original strand, 4641942 - 4642063
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    ||||||||||| | | |||||||||  || |||||||||||||||||||||| ||||||||||||||||||| | |||||||||| ||||||| ||||||    
T  4641942 attttatagagcccgtgcaaaaaatcaatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgcggataatttcatatttcctgcggata 4642041  T
Q  264 tatctttcttgcggaacctaaa 285  Q
    |||||||| |||||| ||||||    
T  4642042 tatctttcctgcggatcctaaa 4642063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 164 - 242
Target Start/End: Original strand, 33468876 - 33468954
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagata 242  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  33468876 attttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctacagata 33468954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 164 - 261
Target Start/End: Complemental strand, 4774182 - 4774085
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacgga 261  Q
    |||||||||||||||||||||||| |||| |||||| ||||||| ||||||| ||||||||||||||||| | | |||||||||||||||||| ||||    
T  4774182 attttatagagtctgggcaaaaaaattatcgcaaaatgttactttcttcctgcgaataatttcacatttcttgcggataatttcacatttcctgcgga 4774085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 164 - 237
Target Start/End: Original strand, 31844546 - 31844619
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctac 237  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||    
T  31844546 attttatagagtctgggcaaaaaatttatcgcaaaatgttacttccttcctgcgaataatttcacatttcctac 31844619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 276 - 376
Target Start/End: Complemental strand, 9527143 - 9527043
Alignment:
Q  276 ggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagtaatggttgggct 375  Q
    ||||||||||||||||||||||| ||||||| ||||||||| || | ||||||||| ||||||| ||| ||||||||||| |||||||||||| ||||||    
T  9527143 ggaacctaaatccttggcaaaatctgcaggagatgtgtttcctgtgaaatttacaccaaaatccgcaggaaaagctaaaagttctagtaatggctgggct 9527044  T
Q  376 t 376  Q
    |    
T  9527043 t 9527043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 240 - 316
Target Start/End: Original strand, 33468931 - 33469007
Alignment:
Q  240 ataatttcacatttcctacggatatatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttc 316  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||    
T  33468931 ataatttcacatttcctacagatatatctttcctgcggaacctaaatccttgacaaaatttgcaggaaatgtgtttc 33469007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 164 - 242
Target Start/End: Complemental strand, 34459331 - 34459253
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagata 242  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||   ||||||||||||||||||||||||||    
T  34459331 attttatagagtctgggcaaaaaatttatcacaaaacgttacttccttcccacgaataatttcacatttcctacagata 34459253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 164 - 237
Target Start/End: Complemental strand, 8239482 - 8239409
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctac 237  Q
    ||||||||||  || |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  8239482 attttatagaacctaggcaaaaaatttatcgcaaaacgttacttccttcctatgaataatttcacatttcctac 8239409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 164 - 376
Target Start/End: Original strand, 44238750 - 44238976
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    ||||||||||||||| | |||| |||||| | |||| |||||||| | |    ||||| ||||||||||||| | |||||||||||||||| | ||||||    
T  44238750 attttatagagtctgtgtaaaatatttatcgtaaaatgttacttcatgc----gaatattttcacatttcctgcggataatttcacatttcatgcggata 44238845  T
Q  264 tatctttcttgc-----------------ggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttac-acaaaaatccacagaa 345  Q
    ||||||||||||                 ||||||||||||||||||||||| | || |||||||||||| ||| |||||||| | |||||||| ||  |    
T  44238846 tatctttcttgcagatcctactacctctaggaacctaaatccttggcaaaatctacaagaaatgtgtttcctgcagaatttacaaaaaaaatccgcaaga 44238945  T
Q  346 aaagctaaaaattctagtaatggttgggctt 376  Q
    |||||||||| |||||||||||| |||||||    
T  44238946 aaagctaaaatttctagtaatggctgggctt 44238976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 236
Target Start/End: Complemental strand, 9527267 - 9527195
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttccta 236  Q
    |||||||||||| |||||||||||||||| |||||||||||||  ||||||| ||||||||||||||||||||    
T  9527267 attttatagagtatgggcaaaaaatttatcgcaaaacgttactgtcttcctgcgaataatttcacatttccta 9527195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 168 - 235
Target Start/End: Complemental strand, 49898594 - 49898527
Alignment:
Q  168 tatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcct 235  Q
    ||||||||||||||||||||||||| |||||| ||||| ||||||||| |||||||||||||||||||    
T  49898594 tatagagtctgggcaaaaaatttatcgcaaaatgttacgtccttcctgcgaataatttcacatttcct 49898527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 300 - 376
Target Start/End: Complemental strand, 4774081 - 4774005
Alignment:
Q  300 tgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagtaatggttgggctt 376  Q
    ||||||||||||||||| ||||||||||||| ||| |||| ||| ||||||||||| |||||||||||| |||||||    
T  4774081 tgcaggaaatgtgtttcctgcggaatttacataaatatccgcaggaaaagctaaaagttctagtaatggctgggctt 4774005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 278 - 368
Target Start/End: Original strand, 4642089 - 4642179
Alignment:
Q  278 aacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagtaatgg 368  Q
    |||||||||||||| |||||| |||| ||||||| |||| || | |||||||| |||||||| ||| ||||||||||| ||||||||||||    
T  4642089 aacctaaatccttgacaaaatctgcaagaaatgtatttcctgtgaaatttacataaaaatccgcaggaaaagctaaaagttctagtaatgg 4642179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 278 - 343
Target Start/End: Complemental strand, 24745508 - 24745443
Alignment:
Q  278 aacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacag 343  Q
    ||||||||||||||||||||| ||||| ||||||||||| ||| ||||||||||||||| ||||||    
T  24745508 aacctaaatccttggcaaaatctgcagaaaatgtgtttcctgcagaatttacacaaaaaaccacag 24745443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 276 - 368
Target Start/End: Original strand, 6802113 - 6802209
Alignment:
Q  276 ggaacctaaatccttggcaaaat----atgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagtaatgg 368  Q
    |||||||||||||||||||||||    | |||||||||||||||| || |||||||||| |||||||| ||| |||||| | || ||||||||||||    
T  6802113 ggaacctaaatccttggcaaaatccgcaggcaggaaatgtgtttcctgtggaatttacagaaaaatccgcaggaaaagcgagaagttctagtaatgg 6802209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 281 - 339
Target Start/End: Original strand, 48940438 - 48940496
Alignment:
Q  281 ctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatcc 339  Q
    ||||||||||| |||||| |||| |||||||||||| ||||||||||||||||||||||    
T  48940438 ctaaatccttgacaaaatctgcatgaaatgtgtttcctgcggaatttacacaaaaatcc 48940496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 235
Target Start/End: Complemental strand, 24646258 - 24646187
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcct 235  Q
    ||||||||||| |||||||||||| ||||  ||||| |||||||||||| || ||||||||||| |||||||    
T  24646258 attttatagagcctgggcaaaaaaattatctcaaaatgttacttccttcatgcgaataatttcaaatttcct 24646187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 164 - 242
Target Start/End: Original strand, 6801989 - 6802067
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagata 242  Q
    |||||||||||| ||| |||||||||||| ||||||||||| ||||| | || | |||||| |||||||||| ||||||    
T  6801989 attttatagagtttggacaaaaaatttatcgcaaaacgttatttcctacatgcggataattgcacatttcctgcagata 6802067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 182 - 256
Target Start/End: Original strand, 48940328 - 48940402
Alignment:
Q  182 aaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcct 256  Q
    |||||| |||||||||||| ||| ||| || ||| ||||||||||||||||  | ||||||||||||||||||||    
T  48940328 aaaaaaattattgcaaaactttatttctttactgcgaataatttcacattttttgcagataatttcacatttcct 48940402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 285
Target Start/End: Complemental strand, 34459276 - 34459231
Alignment:
Q  240 ataatttcacatttcctacggatatatctttcttgcggaacctaaa 285  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||    
T  34459276 ataatttcacatttcctacagatatatctttcttgcggatcctaaa 34459231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 164 - 235
Target Start/End: Complemental strand, 24745615 - 24745546
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcct 235  Q
    |||||||||||||||||||||||| |||| ||  || ||||||| |||| || |||||||||||||||||||    
T  24745615 attttatagagtctgggcaaaaaaattatcgc--aatgttactttcttcatgcgaataatttcacatttcct 24745546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 6331875 - 6331825
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcct 214  Q
    |||||||||||  || ||||||||||||| |||||||||||||||||||||    
T  6331875 attttatagagcatgagcaaaaaatttatcgcaaaacgttacttccttcct 6331825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 339
Target Start/End: Complemental strand, 34459206 - 34459144
Alignment:
Q  277 gaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatcc 339  Q
    |||| ||||||||||||||||| ||||||||||||||||| | ||||| || ||||| |||||    
T  34459206 gaacttaaatccttggcaaaatctgcaggaaatgtgtttcctacggaaattccacaacaatcc 34459144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 285
Target Start/End: Complemental strand, 49898543 - 49898498
Alignment:
Q  240 ataatttcacatttcctacggatatatctttcttgcggaacctaaa 285  Q
    |||||||||||||||||  |||||||||||||||||||| ||||||    
T  49898543 ataatttcacatttcctgtggatatatctttcttgcggatcctaaa 49898498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 159 - 198
Target Start/End: Complemental strand, 17875618 - 17875579
Alignment:
Q  159 catatattttatagagtctgggcaaaaaatttattgcaaa 198  Q
    |||| ||||||||||||||||||||||||||||| |||||    
T  17875618 cataaattttatagagtctgggcaaaaaatttatcgcaaa 17875579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 334 - 372
Target Start/End: Complemental strand, 14727358 - 14727320
Alignment:
Q  334 aaatccacagaaaaagctaaaaattctagtaatggttgg 372  Q
    |||||| ||| ||||||||||||||||||||||||||||    
T  14727358 aaatccgcaggaaaagctaaaaattctagtaatggttgg 14727320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 285
Target Start/End: Complemental strand, 9527212 - 9527167
Alignment:
Q  240 ataatttcacatttcctacggatatatctttcttgcggaacctaaa 285  Q
    |||||||||||||||||| |||||||||||||| | ||| ||||||    
T  9527212 ataatttcacatttcctatggatatatctttctggaggatcctaaa 9527167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 143; Significance: 5e-75; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 170 - 376
Target Start/End: Complemental strand, 44047794 - 44047588
Alignment:
Q  170 tagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggatatatctt 269  Q
    |||||||||| |||||||||||| ||||||||||||||| |||||   |||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  44047794 tagagtctggacaaaaaatttatcgcaaaacgttacttctttcctacaaataatttcacatttcctgcagataaattcacatttcctacggatatatctt 44047695  T
Q  270 tcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagtaatggt 369  Q
    ||||||||||||||||||||||||||||| ||||||||||   |||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  44047694 tcttgcggaacctaaatccttggcaaaatctgcaggaaatacatttcctgcggaatttacacaaaaatccgcaggaaaagctaaaaattctagtaatggt 44047595  T
Q  370 tgggctt 376  Q
     ||||||    
T  44047594 agggctt 44047588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 164 - 376
Target Start/End: Complemental strand, 28311493 - 28311281
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||||||  ||||||||||||||||||| ||||||| |||||||||||||||||||    
T  28311493 attttatagagtctgggcaaaaaatttatcgcaaaacattacttccttcctacgaataatttcacatttcctgcagataaattcacatttcctacggata 28311394  T
Q  264 tatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagt 363  Q
    ||||||||  ||||||||||||||||||||||||| | ||||||||   |||| |||||||||||||||||||||| ||| |||| ||||||||||||||    
T  28311393 tatctttccagcggaacctaaatccttggcaaaatctacaggaaatacatttcctgcggaatttacacaaaaatccgcaggaaaaactaaaaattctagt 28311294  T
Q  364 aatggttgggctt 376  Q
    |||||| ||||||    
T  28311293 aatggtagggctt 28311281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 164 - 376
Target Start/End: Complemental strand, 53652114 - 53651902
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    |||||||||||||||| |||||||||||| ||||||| |||| | ||||||  ||||||||||||||||||| ||||||| |||||||||||||||||||    
T  53652114 attttatagagtctggacaaaaaatttatcgcaaaacattacgttcttcctacgaataatttcacatttcctgcagataaattcacatttcctacggata 53652015  T
Q  264 tatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagt 363  Q
    |||||||| ||| |||||||||||||||||||||| |||||||||||  |||| |||||||||||||||||||||| ||| |||||||||||||||||||    
T  53652014 tatctttcctgcagaacctaaatccttggcaaaatctgcaggaaatgcatttcctgcggaatttacacaaaaatccgcaggaaaagctaaaaattctagt 53651915  T
Q  364 aatggttgggctt 376  Q
    |||||| ||||||    
T  53651914 aatggtagggctt 53651902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 164 - 376
Target Start/End: Complemental strand, 14461281 - 14461069
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    ||||||||||| |||||||||||||||||  ||||||||||||||||||||  ||||||||| ||||||||| ||||||| |||||||||||||||||||    
T  14461281 attttatagagcctgggcaaaaaatttatcacaaaacgttacttccttcctacgaataattttacatttcctgcagataaattcacatttcctacggata 14461182  T
Q  264 tatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagt 363  Q
    |||||||| |||||||||||||||||||||||||| ||||||| ||   |||| ||||||||||||| |||||||| ||| ||||| |||||||||||||    
T  14461181 tatctttcctgcggaacctaaatccttggcaaaatctgcaggacatacatttcctgcggaatttacataaaaatccgcaggaaaagttaaaaattctagt 14461082  T
Q  364 aatggttgggctt 376  Q
    |||||| ||||||    
T  14461081 aatggtagggctt 14461069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 164 - 376
Target Start/End: Complemental strand, 7501172 - 7500948
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    ||||||||||| || |  ||||||||||| |||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  7501172 attttatagagcctcgataaaaaatttatcgcaaaacgttacttacttcctgcgaataatttcacatttcctgcagataatttcacatttcctacggata 7501073  T
Q  264 tatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaa------------aaatccacagaaaaagct 351  Q
    |||||||| |||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||            |||||| ||| |||||||    
T  7501072 tatctttcctgcggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcggaatttacacaaacatccgcatgtaaatccgcaggaaaagct 7500973  T
Q  352 aaaaattctagtaatggttgggctt 376  Q
    |||||||||||||||||||||||||    
T  7500972 aaaaattctagtaatggttgggctt 7500948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 164 - 376
Target Start/End: Complemental strand, 12910042 - 12909824
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    ||||||||||| ||||||||||||||||| ||||| |||||||||||||| |  ||||||||||||||||||  |||||| |||||||||||||||||||    
T  12910042 attttatagagcctgggcaaaaaatttatcgcaaatcgttacttccttcccg--aataatttcacatttcctgtagataaattcacatttcctacggata 12909945  T
Q  264 tatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtg--------tttcgtgcggaatttacacaaaaatccacagaaaaagctaaaa 355  Q
    |||||||| ||||||||||||||| |||||||||| ||||||||||  |        |||| |||||||||||||||||||||| ||| |||||||||||    
T  12909944 tatctttcctgcggaacctaaatctttggcaaaatctgcaggaaatcagaaaatacatttcctgcggaatttacacaaaaatccgcaggaaaagctaaaa 12909845  T
Q  356 attctagtaatggttgggctt 376  Q
    |||||||||||||| ||||||    
T  12909844 attctagtaatggtagggctt 12909824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 240 - 376
Target Start/End: Original strand, 25391805 - 25391941
Alignment:
Q  240 ataatttcacatttcctacggatatatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatcc 339  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||   |||| ||||||||||||||||||||||    
T  25391805 ataatttcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatttgcaagaaatacatttcttgcggaatttacacaaaaatcc 25391904  T
Q  340 acagaaaaagctaaaaattctagtaatggttgggctt 376  Q
     ||| ||||||||||||||||||||||||| ||||||    
T  25391905 gcaggaaaagctaaaaattctagtaatggtagggctt 25391941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 164 - 308
Target Start/End: Original strand, 43700098 - 43700242
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    |||||||||||  |||| ||||||| ||| ||||||||||||||| || ||| ||||||||||||||||||| ||||||||||||||||||| |||||||    
T  43700098 attttatagagcttgggtaaaaaatatatcgcaaaacgttacttcttttctgcgaataatttcacatttcctgcagataatttcacatttccaacggata 43700197  T
Q  264 tatctttcttgcggaacctaaatccttggcaaaatatgcaggaaa 308  Q
    |||||||| |||||||||||||||||||||||||| |||||||||    
T  43700198 tatctttcctgcggaacctaaatccttggcaaaatctgcaggaaa 43700242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 3 - 132
Target Start/End: Original strand, 7660401 - 7660531
Alignment:
Q  3 taacctgaaaaaagcgcacactttgataatttttgt-cttgccttaattagaattcagtaacatgtaggtcaaacactttatttgaaaaaaccggcccta 101  Q
    ||||||||||||| | |||||||||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||    
T  7660401 taacctgaaaaaatcccacactttgataattttttttcttgccttaattagaattcattaacatgtaggtcaaccactttatttgaaaaaacctgcccta 7660500  T
Q  102 aaaggaaaaatcaacaaagatgagtatggtc 132  Q
    ||||||||||||| |||||||| ||||||||    
T  7660501 aaaggaaaaatcaccaaagatgtgtatggtc 7660531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 240 - 339
Target Start/End: Original strand, 26371002 - 26371101
Alignment:
Q  240 ataatttcacatttcctacggatatatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatcc 339  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  26371002 ataatttcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatcc 26371101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 164 - 276
Target Start/End: Original strand, 33178997 - 33179109
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||| || ||||||||||||||||| || ||||||    
T  33178997 attttatagagtctgggcaaaaaatttatcgcaaaacgttacttcattcctgcgaataatttcacattttctgcagataatttcacattttctgcggata 33179096  T
Q  264 tatctttcttgcg 276  Q
    |||||||| ||||    
T  33179097 tatctttcctgcg 33179109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 240 - 335
Target Start/End: Complemental strand, 37516782 - 37516687
Alignment:
Q  240 ataatttcacatttcctacggatatatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaa 335  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||| ||| ||||||||||||||    
T  37516782 ataatttcacatttcctacggatatatctttcctgcggaacctagatccttggcaaaatctgcaggaaatgtgtttcctgcagaatttacacaaaa 37516687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 164 - 262
Target Start/End: Original strand, 41218260 - 41218358
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggat 262  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||| |||||    
T  41218260 attttatagagtctaggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgcagataattttacatttcctgcggat 41218358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 276 - 368
Target Start/End: Original strand, 33179141 - 33179233
Alignment:
Q  276 ggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagtaatgg 368  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| | ||| ||||||||||| ||||||||||||    
T  33179141 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaattcgcaggaaaagctaaaagttctagtaatgg 33179233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 164 - 237
Target Start/End: Original strand, 26370947 - 26371020
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctac 237  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  26370947 attttatagagtctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctac 26371020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 276 - 368
Target Start/End: Complemental strand, 53068346 - 53068254
Alignment:
Q  276 ggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagtaatgg 368  Q
    ||||||||||| ||||||||||| ||||||||||||||||| || ||||||||||||||||||| ||| ||||| ||||| ||||||||||||    
T  53068346 ggaacctaaattcttggcaaaatctgcaggaaatgtgtttcctgtggaatttacacaaaaatccgcaggaaaagttaaaacttctagtaatgg 53068254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 283 - 371
Target Start/End: Complemental strand, 53987961 - 53987873
Alignment:
Q  283 aaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagtaatggttg 371  Q
    ||||||| |||||||| ||||||||||||||||| ||||||||||||| |||||||| ||| ||||||||||| |||||||||||||||    
T  53987961 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacataaaaatccgcaggaaaagctaaaagttctagtaatggttg 53987873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 235
Target Start/End: Complemental strand, 53988048 - 53987976
Alignment:
Q  164 attttatagagtctgggcaaaaaa-tttattgcaaaacgttacttccttcctgtgaataatttcacatttcct 235  Q
    ||||||||||||| |||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||    
T  53988048 attttatagagtccgggcaaaaaaatttattgcaaaatgttacttccttcctgcgaataatttcacatttcct 53987976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 283 - 378
Target Start/End: Complemental strand, 9600447 - 9600352
Alignment:
Q  283 aaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagtaatggttgggcttac 378  Q
    |||||||  ||||||| ||||||||||||||||| ||| ||||||||| |||||||| ||| |||||| |||| |||||||||||| |||| ||||    
T  9600447 aaatcctaagcaaaatctgcaggaaatgtgtttcctgcagaatttacataaaaatccgcaggaaaagccaaaagttctagtaatggctgggattac 9600352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 164 - 237
Target Start/End: Original strand, 25391750 - 25391823
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctac 237  Q
    |||||||||||  |||||||||||||||| ||||||| ||||||||||| |  |||||||||||||||||||||    
T  25391750 attttatagagcttgggcaaaaaatttatcgcaaaacattacttccttcttacgaataatttcacatttcctac 25391823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 278 - 350
Target Start/End: Complemental strand, 38239555 - 38239483
Alignment:
Q  278 aacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagc 350  Q
    |||||||||||||||||||||  |||| ||||||||||| ||| |||||||||| |||||||||| |||||||    
T  38239555 aacctaaatccttggcaaaatccgcagaaaatgtgtttcctgcagaatttacactaaaatccacaaaaaaagc 38239483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 37516837 - 37516786
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctg 215  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  37516837 attttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctg 37516786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 305 - 376
Target Start/End: Complemental strand, 44625773 - 44625702
Alignment:
Q  305 gaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagtaatggttgggctt 376  Q
    |||||||||||| | | |||||||||||||||||  ||| |||||||||||||||||||||| |||||||||    
T  44625773 gaaatgtgtttcctccagaatttacacaaaaatctgcaggaaaagctaaaaattctagtaatagttgggctt 44625702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 164 - 237
Target Start/End: Complemental strand, 26278546 - 26278473
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctac 237  Q
    |||||||||||| | ||||||||| |||| |||||| | |||||||||| || |||||||||||||||||||||    
T  26278546 attttatagagtttaggcaaaaaaattatcgcaaaatgatacttccttcttgcgaataatttcacatttcctac 26278473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 7623212 - 7623128
Alignment:
Q  3 taacctgaaaaaagcgcacactttgataatttttgtcttgccttaattagaattcagtaacatgtaggtcaaacactttatttga 87  Q
    ||||||||||||| | |||||||||||| | ||| ||||||||||||||| |||   ||||||| ||||||| ||||||||||||    
T  7623212 taacctgaaaaaaccccacactttgatattatttttcttgccttaattaggatttgttaacatgaaggtcaaccactttatttga 7623128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 277 - 337
Target Start/End: Original strand, 41218389 - 41218449
Alignment:
Q  277 gaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaat 337  Q
    |||||||||| |||||||||||  |||||||||||||||| ||||||||||| ||||||||    
T  41218389 gaacctaaattcttggcaaaatcggcaggaaatgtgtttcctgcggaatttagacaaaaat 41218449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 283 - 337
Target Start/End: Complemental strand, 35077321 - 35077267
Alignment:
Q  283 aaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaat 337  Q
    ||||||| |||||||| ||||||||||||||||| ||||||||||||| ||||||    
T  35077321 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacataaaaat 35077267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 283 - 339
Target Start/End: Complemental strand, 26278460 - 26278404
Alignment:
Q  283 aaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatcc 339  Q
    ||||||| |||||||| ||||||||||||||||| | ||||||||||| ||||||||    
T  26278460 aaatcctaggcaaaatctgcaggaaatgtgtttcctccggaatttacataaaaatcc 26278404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 345 - 376
Target Start/End: Original strand, 43700240 - 43700271
Alignment:
Q  345 aaaagctaaaaattctagtaatggttgggctt 376  Q
    ||||||||||||||||||||||||||||||||    
T  43700240 aaaagctaaaaattctagtaatggttgggctt 43700271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 334 - 372
Target Start/End: Complemental strand, 37516676 - 37516638
Alignment:
Q  334 aaatccacagaaaaagctaaaaattctagtaatggttgg 372  Q
    |||||| ||| ||||||||||||||||||||||||||||    
T  37516676 aaatccgcaggaaaagctaaaaattctagtaatggttgg 37516638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 41358541 - 41358595
Alignment:
Q  181 caaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcct 235  Q
    ||||||| |||| ||||||||||| |||||||||| | |||||| ||||||||||    
T  41358541 caaaaaaattatcgcaaaacgttatttccttcctgcggataattgcacatttcct 41358595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 368
Target Start/End: Original strand, 47511667 - 47511753
Alignment:
Q  282 taaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagtaatgg 368  Q
    |||||| || |||||||  |||||||||||||||| | |  |||||| |||||||||| ||| |||||| |||  ||||||||||||    
T  47511667 taaatctttagcaaaatccgcaggaaatgtgtttccttcaaaatttatacaaaaatccgcaggaaaagcgaaaggttctagtaatgg 47511753  T

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Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 317
Target Start/End: Complemental strand, 43447660 - 43447619
Alignment:
Q  276 ggaacctaaatccttggcaaaatatgcaggaaatgtgtttcg 317  Q
    |||| |||||||||||||||||| ||||||||| ||||||||    
T  43447660 ggaagctaaatccttggcaaaatctgcaggaaacgtgtttcg 43447619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 142; Significance: 2e-74; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 164 - 376
Target Start/End: Complemental strand, 28928270 - 28928057
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    |||||| |||||||||| ||||||||||| | |||| ||||||||||||||| |||||||||||||||| || |||||||||||||||||||||| ||||    
T  28928270 attttaaagagtctgggtaaaaaatttatcgtaaaaagttacttccttcctgcgaataatttcacattttctgcagataatttcacatttcctacagata 28928171  T
Q  264 tatctttcttgcggaacctaaatccttggcaaaatatgca-ggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctag 362  Q
    |||||||| |||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||| ||| ||| ||||||||||||||||||    
T  28928170 tatctttcctgcggaacctaaatccttggcaaaatctgcagggaaatgtgtttcctgcggaatttacacaaaactccgcaggaaaagctaaaaattctag 28928071  T
Q  363 taatggttgggctt 376  Q
    |||||||| |||||    
T  28928070 taatggttaggctt 28928057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 164 - 376
Target Start/End: Original strand, 36406394 - 36406618
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||    
T  36406394 attttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcttgcagataatttcacatttcctacggata 36406493  T
Q  264 tatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaa------------aatccacagaaaaagct 351  Q
    |||||||| |||||||||| ||||||||||||||| ||||||||||||||||| | |||||||||||||||            ||||||||| |||||||    
T  36406494 tatctttcctgcggaacctcaatccttggcaaaatctgcaggaaatgtgtttcctacggaatttacacaaatatccgcaggtaaatccacaggaaaagct 36406593  T
Q  352 aaaaattctagtaatggttgggctt 376  Q
    ||||||| |||||||| ||||||||    
T  36406594 aaaaattatagtaatgtttgggctt 36406618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 240 - 376
Target Start/End: Complemental strand, 24965167 - 24965031
Alignment:
Q  240 ataatttcacatttcctacggatatatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatcc 339  Q
    ||||||||||||||||| |  ||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  24965167 ataatttcacatttcctgcaaatatatctttcctgcggaacctaaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatcc 24965068  T
Q  340 acagaaaaagctaaaaattctagtaatggttgggctt 376  Q
     ||| ||||||||||||||||||||||||||||||||    
T  24965067 gcaggaaaagctaaaaattctagtaatggttgggctt 24965031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 180 - 339
Target Start/End: Original strand, 3383940 - 3384099
Alignment:
Q  180 gcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggatatatctttcttgcggaa 279  Q
    ||||||| ||||| |||||||||||||||||||||  |||||||||||| |||||| ||||||| ||||||||||||||||||||||||||| |||||||    
T  3383940 gcaaaaattttatcgcaaaacgttacttccttcctacgaataatttcacgtttcctgcagataaattcacatttcctacggatatatctttcctgcggaa 3384039  T
Q  280 cctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatcc 339  Q
    ||||||||||||||||||| | || |||||   |||  ||| ||||||||||||||||||    
T  3384040 cctaaatccttggcaaaatctacatgaaatacattttttgcagaatttacacaaaaatcc 3384099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 164 - 376
Target Start/End: Original strand, 27321767 - 27321967
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    ||||||||||| |||||||||||| |||| |||||| ||||||||||||||| |||||||||||||||| || ||||||||||||||| |||| | ||      
T  27321767 attttatagagcctgggcaaaaaaattatcgcaaaatgttacttccttcctgcgaataatttcacattttctgcagataatttcacatatcctgcaga-- 27321864  T
Q  264 tatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagt 363  Q
     |||     ||| |     |||| || |||||||| ||||||||||||||||| ||||||||||||| |||||||| ||| |||| |||||| || ||||    
T  27321865 -atc-----tgcag----gaaattctaggcaaaatttgcaggaaatgtgtttcctgcggaatttacataaaaatccgcaggaaaaactaaaagttttagt 27321954  T
Q  364 aatggttgggctt 376  Q
    ||||| |||||||    
T  27321955 aatggctgggctt 27321967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 164 - 263
Target Start/End: Original strand, 34282765 - 34282864
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    ||||||||||| |||| |||||||||||| ||| |||||||||||||||||| ||||||||||||||||||| || ||||||||||||||| | ||||||    
T  34282765 attttatagagcctggacaaaaaatttatcgcacaacgttacttccttcctgcgaataatttcacatttcctgcaaataatttcacatttcatgcggata 34282864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 164 - 249
Target Start/End: Original strand, 35384270 - 35384355
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcac 249  Q
    |||||||||||  |||||||||||||||| |||||||| ||||||||||||  ||||||||||||||||||| |||||||||||||    
T  35384270 attttatagagcttgggcaaaaaatttatcgcaaaacggtacttccttcctacgaataatttcacatttcctccagataatttcac 35384355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 275 - 367
Target Start/End: Original strand, 34282913 - 34283005
Alignment:
Q  275 cggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagtaatg 367  Q
    |||||| ||||||||||||||||| ||||||||||||||||| ||| |||||||||| ||||||| ||  ||||||||||| |||||||||||    
T  34282913 cggaacttaaatccttggcaaaatctgcaggaaatgtgtttcctgcagaatttacactaaaatccgcaagaaaagctaaaagttctagtaatg 34283005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 276 - 344
Target Start/End: Complemental strand, 13243192 - 13243124
Alignment:
Q  276 ggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacaga 344  Q
    ||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| ||| ||||    
T  13243192 ggaacctaaatccttggcaaaatctacaggaaatgtgtttcctgcggaatttacacaaaactccgcaga 13243124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 276 - 376
Target Start/End: Original strand, 21138075 - 21138175
Alignment:
Q  276 ggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagtaatggttgggct 375  Q
    |||||||||||||||||||||||  |||||||| ||||||| |||| |||||||||  |||||| ||| |||||| | |  |||||||||||||| ||||    
T  21138075 ggaacctaaatccttggcaaaattcgcaggaaacgtgtttcatgcgaaatttacacccaaatccgcaggaaaagcaagaggttctagtaatggttaggct 21138174  T
Q  376 t 376  Q
    |    
T  21138175 t 21138175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 164 - 263
Target Start/End: Complemental strand, 13243341 - 13243242
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    ||||||||||| ||| ||||||||||||| | ||||||||||||  ||| ||  |||||||||||||||  |  ||||||||||||||||||| ||||||    
T  13243341 attttatagagcctgagcaaaaaatttatcgtaaaacgttacttttttcttgccaataatttcacattttgtggagataatttcacatttcctgcggata 13243242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 164 - 235
Target Start/End: Complemental strand, 38214936 - 38214865
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcct 235  Q
    |||||||||||  ||||||||||| |||| |||||| |||||||| |||||| |||||||||||||||||||    
T  38214936 attttatagagcttgggcaaaaaaattatcgcaaaatgttacttcattcctgcgaataatttcacatttcct 38214865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 283 - 364
Target Start/End: Complemental strand, 38214850 - 38214769
Alignment:
Q  283 aaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagta 364  Q
    ||||||| | |||||| ||||||||||||||||  ||| ||||||||| |||||||| ||| ||||||||||| ||||||||    
T  38214850 aaatcctagacaaaatctgcaggaaatgtgttttatgcagaatttacataaaaatccgcaggaaaagctaaaagttctagta 38214769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 221 - 277
Target Start/End: Original strand, 39431591 - 39431647
Alignment:
Q  221 aatttcacatttcctacagataatttcacatttcctacggatatatctttcttgcgg 277  Q
    |||||||||||||||  ||||||||||||||||| | ||||||||||||||||||||    
T  39431591 aatttcacatttcctgtagataatttcacatttcatgcggatatatctttcttgcgg 39431647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 276 - 335
Target Start/End: Original strand, 39431679 - 39431738
Alignment:
Q  276 ggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaa 335  Q
    |||||||||||| |||||||||| |||| |||||||||||| | ||||||||||||||||    
T  39431679 ggaacctaaatctttggcaaaatctgcacgaaatgtgtttcctacggaatttacacaaaa 39431738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 24965222 - 24965171
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctg 215  Q
    ||||||||||| ||||||||||||||||| ||||||| |||||| ||| |||    
T  24965222 attttatagagcctgggcaaaaaatttatcgcaaaaccttactttctttctg 24965171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 182 - 237
Target Start/End: Original strand, 31500736 - 31500791
Alignment:
Q  182 aaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctac 237  Q
    ||||||||||||||||||  ||||||||||| |  ||||||||| |||||||||||    
T  31500736 aaaaaatttattgcaaaatattacttccttcatacgaataattttacatttcctac 31500791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 368
Target Start/End: Original strand, 31500854 - 31500950
Alignment:
Q  282 taaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaa----------aaatccacagaaaaagctaaaaattctagtaatgg 368  Q
    |||||||||||||||||  | |||||||||||||| ||| ||||||||| ||          |||||| |||||||||||||||||| |||||||||    
T  31500854 taaatccttggcaaaatccgtaggaaatgtgtttcctgcagaatttacataaatccgcaagtaaatcctcagaaaaagctaaaaattttagtaatgg 31500950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 34282840 - 34282884
Alignment:
Q  218 aataatttcacatttcctacagataatttcacatttcctacggat 262  Q
    |||||||||||||||| | | |||||||||||||||||| |||||    
T  34282840 aataatttcacatttcatgcggataatttcacatttcctgcggat 34282884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 141; Significance: 8e-74; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 164 - 376
Target Start/End: Complemental strand, 1906 - 1694
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||| ||||||| |||||||||||||||||||    
T  1906 attttatagagtctgggcaaaaaatttatcgcaaaacgttacttcctttctgcgaataatttcacatttcctgcagataagttcacatttcctacggata 1807  T
Q  264 tatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagt 363  Q
    |||||||| |||||||| ||||| ||||||||||| ||||||||||||||||| |||| |||||||||||||||||  || ||||| |||||||| || |    
T  1806 tatctttcctgcggaacgtaaattcttggcaaaatctgcaggaaatgtgtttcctgcgaaatttacacaaaaatccgaaggaaaaggtaaaaattttaat 1707  T
Q  364 aatggttgggctt 376  Q
    |||| ||||||||    
T  1706 aatgattgggctt 1694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 133; Significance: 5e-69; HSPs: 2)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 164 - 376
Target Start/End: Complemental strand, 11734 - 11523
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    ||||||||||  ||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||| ||||||| |||||||||||||||||||    
T  11734 attttatagaacctgggcaaaaaatttatcgcaaaacgttacttccttcctacgaataatttcacatttcctgcagataaattcacatttcctacggata 11635  T
Q  264 tatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagt 363  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||  |||  |||||||||||||||| ||||| ||| |||||  ||||||||||||    
T  11634 tatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgcattttctgcggaatttacacaataatccgcaggaaaag-aaaaaattctagt 11536  T
Q  364 aatggttgggctt 376  Q
    |||||| ||||||    
T  11535 aatggtagggctt 11523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 164 - 376
Target Start/End: Complemental strand, 7120 - 6909
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    ||||||||||  ||||||||||||||||| ||||| |||||||||||||||  ||||||||| ||||||||| | ||||| |||||||||||||||||||    
T  7120 attttatagaacctgggcaaaaaatttatcgcaaa-cgttacttccttcctacgaataattttacatttcctgctgataaattcacatttcctacggata 7022  T
Q  264 tatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagt 363  Q
    |||| ||| |||||||||||||||||||||||||| |||||||||||  |||| | |||||||||||||| ||||| ||| |||||||||||||||||||    
T  7021 tatccttcctgcggaacctaaatccttggcaaaatctgcaggaaatgcatttccttcggaatttacacaataatccgcaggaaaagctaaaaattctagt 6922  T
Q  364 aatggttgggctt 376  Q
    |||||| ||||||    
T  6921 aatggtagggctt 6909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 120; Significance: 3e-61; HSPs: 39)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 164 - 343
Target Start/End: Original strand, 23704374 - 23704553
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    |||||||||||| |||  ||||||||||| | ||||||||||||| ||| || ||||||||| ||||||||| |||||||||||||||||||||||||||    
T  23704374 attttatagagtttggataaaaaatttatcgtaaaacgttacttctttcttgcgaataattttacatttcctgcagataatttcacatttcctacggata 23704473  T
Q  264 tatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacag 343  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||||   |||||||||||||||||||||||||    
T  23704474 tatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgttttcggcggaatttacacaaaaatccacag 23704553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 164 - 339
Target Start/End: Original strand, 35300333 - 35300508
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    |||||||||||  |||| ||||||||||| | ||||||||||||||||| |  ||||||||||||||||||| ||||||| |||||||||||||||||||    
T  35300333 attttatagagcttgggaaaaaaatttatcgtaaaacgttacttccttcttacgaataatttcacatttcctgcagataaattcacatttcctacggata 35300432  T
Q  264 tatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatcc 339  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||   |||| ||||||||||||||||||||||    
T  35300433 tatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatacatttcctgcggaatttacacaaaaatcc 35300508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 240 - 339
Target Start/End: Original strand, 26722919 - 26723018
Alignment:
Q  240 ataatttcacatttcctacggatatatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatcc 339  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||| ||||||||    
T  26722919 ataatttcacatttcttacggatatatctttcctgcggaacctaaatccttgacaaaatctgcaggaaatgtgtttcctgcggaatttacataaaaatcc 26723018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 164 - 235
Target Start/End: Complemental strand, 3012532 - 3012461
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcct 235  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3012532 attttatagagtctgggcaaaaaaattattgcaaaacgttacttccttcctgtgaataatttcacatttcct 3012461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 278 - 367
Target Start/End: Complemental strand, 21688211 - 21688122
Alignment:
Q  278 aacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagtaatg 367  Q
    ||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||| |||||||||||    
T  21688211 aacctaaatccttcgcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaggaaaagctaaaagttctagtaatg 21688122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 164 - 263
Target Start/End: Original strand, 21932647 - 21932746
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    ||||||||||||||||||||||||||||| |||||| |||||||| |||||| ||||||||||| ||||||| |||||||||| | ||||||| ||||||    
T  21932647 attttatagagtctgggcaaaaaatttatcgcaaaatgttacttctttcctgcgaataatttcatatttcctgcagataattttatatttcctgcggata 21932746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 164 - 262
Target Start/End: Complemental strand, 4843530 - 4843432
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggat 262  Q
    |||||||||||  || ||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||| | |||||||||||||||||| |||||    
T  4843530 attttatagagcttgagcaaaaaatttatcgcaaaacgttacttctttcctgcgaataatttcacatttcctgcggataatttcacatttcctgcggat 4843432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 164 - 254
Target Start/End: Original strand, 7873125 - 7873215
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttc 254  Q
    |||||||||||||||||||||||| |||| |||||| ||||||||||||| |  |||||||||||||||||| | ||||||||||||||||    
T  7873125 attttatagagtctgggcaaaaaaattatcgcaaaatgttacttccttcccgctaataatttcacatttcctgcggataatttcacatttc 7873215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 164 - 261
Target Start/End: Original strand, 22206591 - 22206688
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacgga 261  Q
    ||||||||||| |||||||| ||| |||| |||||| ||||||||||||||| ||||||||||||||||||| | |||||| ||||||||||| ||||    
T  22206591 attttatagagcctgggcaagaaaattatcgcaaaatgttacttccttcctgcgaataatttcacatttcctgcggataatctcacatttcctgcgga 22206688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 164 - 261
Target Start/End: Complemental strand, 22228148 - 22228051
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacgga 261  Q
    ||||||||||| |||||||| ||| |||| |||||| ||||||||||||||| ||||||||||||||||||| | |||||| ||||||||||| ||||    
T  22228148 attttatagagcctgggcaagaaaattatcgcaaaatgttacttccttcctgcgaataatttcacatttcctgcggataatctcacatttcctgcgga 22228051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 164 - 256
Target Start/End: Original strand, 5991325 - 5991417
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcct 256  Q
    ||||||||||| |||||||||||| |||| |||||| ||||||||||||||| ||||||||| ||||||| | | ||||||||||||||||||    
T  5991325 attttatagagcctgggcaaaaaaattatcgcaaaatgttacttccttcctgcgaataattttacatttcttgcggataatttcacatttcct 5991417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 164 - 278
Target Start/End: Complemental strand, 21688359 - 21688244
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcaca-tttcctacggat 262  Q
    |||||||||| ||| ||||||||||||||  ||||| |||||| |  | ||||||||||||||||||||||| |||||||||||||| |||  |||||||    
T  21688359 attttatagaatctaggcaaaaaatttatcacaaaatgttactgctattctgtgaataatttcacatttcctgcagataatttcacattttaatacggat 21688260  T
Q  263 atatctttcttgcgga 278  Q
    ||||||||| ||||||    
T  21688259 atatctttcctgcgga 21688244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 164 - 263
Target Start/End: Original strand, 28693908 - 28694007
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    ||||||||||| |||||||||||| |||| ||||||| |||||||||| ||| ||||||||||||||||||| | ||||||||||||  |||| ||||||    
T  28693908 attttatagagcctgggcaaaaaaattatcgcaaaactttacttcctttctgcgaataatttcacatttcctccggataatttcacaaatcctgcggata 28694007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 275 - 342
Target Start/End: Original strand, 41759624 - 41759691
Alignment:
Q  275 cggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccaca 342  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||    
T  41759624 cggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacaccaaaatccaca 41759691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 278 - 376
Target Start/End: Original strand, 21932798 - 21932895
Alignment:
Q  278 aacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagtaatggttgggctt 376  Q
    |||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||| || | ||| ||||| ||||| || |||||||||||||||||    
T  21932798 aacctaaatccttgacaaaatctgcaggaaatgtgtttcctgcggaatttacacaaatat-cgcaggaaaagttaaaagttttagtaatggttgggctt 21932895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 164 - 354
Target Start/End: Original strand, 38991082 - 38991255
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagataatttcacatttcctacggata 263  Q
    ||||||||||||| || ||||||| |||| |||||||||||  | ||||||| ||||||||||| |||||||||  |||||||||||||| || |||||     
T  38991082 attttatagagtccggacaaaaaagttatcgcaaaacgttatcttcttcctgcgaataatttcatatttcctacgaataatttcacattttctgcggat- 38991180  T
Q  264 tatctttcttgcggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaa 354  Q
                    ||||||||||||||||||| |||||||||||||||||   ||||||||| |||||||||| ||| ||||||||||    
T  38991181 ----------------cctaaatccttggcaaaatctgcaggaaatgtgtttccaacggaatttatacaaaaatccgcaggaaaagctaaa 38991255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 164 - 233
Target Start/End: Original strand, 26722864 - 26722933
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttc 233  Q
    |||||||||||  |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  26722864 attttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 26722933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 276 - 368
Target Start/End: Original strand, 815002 - 815094
Alignment:
Q  276 ggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagtaatgg 368  Q
    ||||||||||| ||||||||||| |||| ||||||| |||  ||||||||||||||||||||||  || ||||||||||| ||||||||||||    
T  815002 ggaacctaaattcttggcaaaatctgcaagaaatgtattttctgcggaatttacacaaaaatccgtaggaaaagctaaaagttctagtaatgg 815094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 41759532 - 41759596
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcac 228  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||    
T  41759532 attttatagagtctgggcaaaaaatttatcgcacaacgttacttccttcctgcgaataatttcac 41759596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 276 - 339
Target Start/End: Original strand, 38129010 - 38129073
Alignment:
Q  276 ggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatcc 339  Q
    ||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||    
T  38129010 ggaacctaaatccttggcaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatcc 38129073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 276 - 368
Target Start/End: Original strand, 42439591 - 42439683
Alignment:
Q  276 ggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagtaatgg 368  Q
    ||||||||||||||||||||||| ||||| ||||||||||| |||| ||||||||||||| ||  |||  ||| |||||| ||||||||||||    
T  42439591 ggaacctaaatccttggcaaaatctgcagaaaatgtgtttcctgcgaaatttacacaaaactctgcaggtaaaactaaaagttctagtaatgg 42439683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 168 - 262
Target Start/End: Complemental strand, 19377618 - 19377523
Alignment:
Q  168 tatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcaca-tttcctacagataatttcacatttcctacggat 262  Q
    |||||||||||||||||||| |||| |||||| ||||  || |||||| ||||||||||||| |||||| | |||||||||||||||||| |||||    
T  19377618 tatagagtctgggcaaaaaaattatcgcaaaatgttatgtctttcctgcgaataatttcacattttcctgcggataatttcacatttcctgcggat 19377523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 276 - 339
Target Start/End: Original strand, 28694057 - 28694120
Alignment:
Q  276 ggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatcc 339  Q
    |||||||||||||| |||||||| ||||||||||||||||| ||| ||||||||||||||||||    
T  28694057 ggaacctaaatcctgggcaaaatctgcaggaaatgtgtttcctgcagaatttacacaaaaatcc 28694120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 283 - 378
Target Start/End: Complemental strand, 30852434 - 30852339
Alignment:
Q  283 aaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatccacagaaaaagctaaaaattctagtaatggttgggcttac 378  Q
    ||||||| |||||||| || |||||||||||||| ||||||||||||| |||| ||| ||| ||||| ||||| |||||||||||| || ||||||    
T  30852434 aaatcctaggcaaaatctgaaggaaatgtgtttcctgcggaatttacataaaattccgcaggaaaagttaaaagttctagtaatggctgagcttac 30852339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 164 - 242
Target Start/End: Original strand, 42439467 - 42439545
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctacagata 242  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||| || ||  |||||||||||||||| |||| ||||    
T  42439467 attttatagggtctgggcaaaaaatttatcgcaaaacgttacttcttttctacgaataatttcacattttctacggata 42439545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 168 - 232
Target Start/End: Original strand, 814882 - 814946
Alignment:
Q  168 tatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacattt 232  Q
    |||||||||||||||||||| |||| ||||||||||||||| ||||||  |||||||||||||||    
T  814882 tatagagtctgggcaaaaaaattatcgcaaaacgttacttcattcctgctaataatttcacattt 814946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 276 - 339
Target Start/End: Complemental strand, 4843402 - 4843339
Alignment:
Q  276 ggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatcc 339  Q
    ||||||||||||||||||||||| |||| |||||||||||| |||||||| |||||||| ||||    
T  4843402 ggaacctaaatccttggcaaaatctgcatgaaatgtgtttcatgcggaatgtacacaaatatcc 4843339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 164 - 235
Target Start/End: Original strand, 25688116 - 25688187
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcct 235  Q
    ||||||||||| ||||| |||||| |||| | |||| ||||||||||| |||||||||||||||||||||||    
T  25688116 attttatagagcctgggtaaaaaaattatcgtaaaatgttacttcctttctgtgaataatttcacatttcct 25688187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 276 - 338
Target Start/End: Complemental strand, 3012408 - 3012346
Alignment:
Q  276 ggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatc 338  Q
    |||||||| |||||||||||||| |||||||| |||||||| |||||||| ||||||||||||    
T  3012408 ggaacctatatccttggcaaaatctgcaggaagtgtgtttcctgcggaatgtacacaaaaatc 3012346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 283 - 376
Target Start/End: Original strand, 7873232 - 7873337
Alignment:
Q  283 aaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaa------------tccacagaaaaagctaaaaattctagtaatggtt 370  Q
    ||||||| |||||||| ||||||||||||||||| ||||||||||||| |||||            ||| ||||||||||||||| ||||||||||||||    
T  7873232 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacataaaaacccgcaggtaaatccgcagaaaaagctaaaagttctagtaatggtt 7873331  T
Q  371 gggctt 376  Q
    ||||||    
T  7873332 gggctt 7873337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 235
Target Start/End: Complemental strand, 30852520 - 30852449
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcct 235  Q
    ||||| |||| |||||| |||||| |||| |||||| ||| ||||||||||| |||||||||||||||||||    
T  30852520 attttttagaatctggggaaaaaaattatcgcaaaatgttgcttccttcctgcgaataatttcacatttcct 30852449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 279 - 339
Target Start/End: Complemental strand, 19377490 - 19377430
Alignment:
Q  279 acctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatcc 339  Q
    |||||||||||||||||||| |||||||||||| |||| | |||||||| |||||| ||||    
T  19377490 acctaaatccttggcaaaatctgcaggaaatgtatttccttcggaatttccacaaacatcc 19377430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 283 - 330
Target Start/End: Original strand, 5991432 - 5991479
Alignment:
Q  283 aaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttaca 330  Q
    ||||||| |||||||| ||||||||||||||||| |||||||||||||    
T  5991432 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 5991479  T

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Target: chr7; HSP #34
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 235
Target Start/End: Original strand, 38128886 - 38128957
Alignment:
Q  164 attttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcct 235  Q
    |||||||| | ||| |||||||| ||||| ||||||||||| ||||||||||   |||||||||||||||||    
T  38128886 attttataaaatctaggcaaaaattttatcgcaaaacgttatttccttcctgcagataatttcacatttcct 38128957  T

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Target: chr7; HSP #35
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 285
Target Start/End: Complemental strand, 3012477 - 3012432
Alignment:
Q  240 ataatttcacatttcctacggatatatctttcttgcggaacctaaa 285  Q
    ||||||||||||||||| |||||||||||||| |||||| ||||||    
T  3012477 ataatttcacatttcctgcggatatatctttcctgcggatcctaaa 3012432  T

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Target: chr7; HSP #36
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 330
Target Start/End: Original strand, 25688202 - 25688249
Alignment:
Q  283 aaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttaca 330  Q
    ||||||| |||||||| |||||||||| |||||| |||||||||||||    
T  25688202 aaatcctaggcaaaatctgcaggaaatatgtttcctgcggaatttaca 25688249  T

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Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 285
Target Start/End: Original strand, 38128932 - 38128986
Alignment:
Q  231 ttcctacagataatttcacatttcctacggatatatctttcttgcggaacctaaa 285  Q
    ||||| |||||||||||||||||||| |  ||||||||||| |||||| ||||||    
T  38128932 ttcctgcagataatttcacatttcctgcacatatatctttcctgcggatcctaaa 38128986  T

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Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 330
Target Start/End: Original strand, 22206709 - 22206745
Alignment:
Q  294 aaaatatgcaggaaatgtgtttcgtgcggaatttaca 330  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  22206709 aaaatctgcaggaaatgtgtttcctgcggaatttaca 22206745  T

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Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 330
Target Start/End: Complemental strand, 22228030 - 22227994
Alignment:
Q  294 aaaatatgcaggaaatgtgtttcgtgcggaatttaca 330  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  22228030 aaaatctgcaggaaatgtgtttcctgcggaatttaca 22227994  T

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Target: scaffold0638 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0638
Description:

Target: scaffold0638; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 159 - 237
Target Start/End: Complemental strand, 4293 - 4215
Alignment:
Q  159 catatattttatagagtctgggcaaaaaatttattgcaaaacgttacttccttcctgtgaataatttcacatttcctac 237  Q
    |||| ||||||||||| |||||||||||| |||| |||||| ||||||||||||||| |||||||||||||||||||||    
T  4293 cataaattttatagagcctgggcaaaaaaattatcgcaaaatgttacttccttcctgcgaataatttcacatttcctac 4215  T

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Target: scaffold0638; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 339
Target Start/End: Complemental strand, 4202 - 4146
Alignment:
Q  283 aaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaatcc 339  Q
    ||||||| |||||||| ||||||||||||||||| | ||||||||||| ||| ||||    
T  4202 aaatcctgggcaaaatctgcaggaaatgtgtttcctacggaatttacataaacatcc 4146  T

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Target: scaffold0021 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 164 - 235
Target Start/End: Original strand, 109208 - 109280
Alignment:
Q  164 attttatagagtctgggcaaaaa-atttattgcaaaacgttacttccttcctgtgaataatttcacatttcct 235  Q
    |||| |||||| |||| |||||| |||||||||||||| |||||||||||||| |||||||||||| ||||||    
T  109208 atttcatagagcctggacaaaaatatttattgcaaaacattacttccttcctgcgaataatttcacgtttcct 109280  T

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Target: scaffold0021; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 233
Target Start/End: Original strand, 112121 - 112179
Alignment:
Q  176 ctgggcaaaaa-atttattgcaaaacgttacttccttcctgtgaataatttcacatttc 233  Q
    ||||||||||| |||||||||||||| ||||||||||||||  ||||||||||| ||||    
T  112121 ctgggcaaaaatatttattgcaaaacattacttccttcctgcaaataatttcacgtttc 112179  T

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Target: scaffold0021; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 276 - 337
Target Start/End: Original strand, 109316 - 109377
Alignment:
Q  276 ggaacctaaatccttggcaaaatatgcaggaaatgtgtttcgtgcggaatttacacaaaaat 337  Q
    ||||||||||| ||| ||||||| ||||| | ||||||||  ||||||||||||||||||||    
T  109316 ggaacctaaattcttagcaaaatctgcagaacatgtgttttctgcggaatttacacaaaaat 109377  T

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