View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16796_low_19 (Length: 358)

Name: NF16796_low_19
Description: NF16796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16796_low_19
NF16796_low_19
[»] chr2 (2 HSPs)
chr2 (16-341)||(16237212-16237538)
chr2 (248-331)||(32407607-32407688)
[»] chr7 (2 HSPs)
chr7 (16-341)||(28574906-28575232)
chr7 (148-279)||(38658234-38658365)
[»] chr3 (3 HSPs)
chr3 (16-341)||(20633098-20633424)
chr3 (16-341)||(48823129-48823455)
chr3 (275-341)||(11692056-11692120)
[»] chr1 (4 HSPs)
chr1 (67-343)||(38833194-38833471)
chr1 (139-341)||(18185400-18185603)
chr1 (27-63)||(38835871-38835907)
chr1 (305-341)||(29752386-29752422)
[»] chr5 (1 HSPs)
chr5 (139-341)||(39180666-39180869)
[»] chr6 (1 HSPs)
chr6 (27-333)||(18568658-18568965)
[»] chr4 (2 HSPs)
chr4 (242-333)||(36123874-36123966)
chr4 (291-341)||(24323553-24323603)
[»] chr8 (1 HSPs)
chr8 (144-276)||(14137690-14137822)


Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 16 - 341
Target Start/End: Original strand, 16237212 - 16237538
Alignment:
Q  16 ctgacggagcgtgtaaggatggtagcatcgcggggtgtggaggacttatccgaggttcgcaaggcgagtggttagcggggttctccaaatttttagggaa 115  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16237212 ctgacggagcgtgtaaggatggtagtatcgcggggtgtggaggacttatccgaggttcgcaaggcgagtggttagcggggttctccaaatttttagggaa 16237311  T
Q  116 gtgtgatgcttttattgcagagctatggggagttttggaaggtttctggtgtgcaaaacgtatggggttcactgtagtagaattaaatgtggattctttg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||| |||||||||||||||||||||| ||    
T  16237312 gtgtgatgcttttattgcagagctatggggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctctg 16237411  T
Q  216 gtggttgtgagtattattacgagtgggaaggaaagcaatgcgagtggtaggagtcttgttcaaaaaa-tagaaaacttcttcaaatggaatgggaagtga 314  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  16237412 gtggttgtgaatattattacgagtgggaaggaaagcaatgcgaggggtaggagtcttgttcaaaaaattagaaaacttcttcaaatggaatgggaagtga 16237511  T
Q  315 atgttaaacactcgtatcgcgaagcaa 341  Q
    | ||||||||||||||||| |||||||    
T  16237512 aggttaaacactcgtatcgtgaagcaa 16237538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 248 - 331
Target Start/End: Original strand, 32407607 - 32407688
Alignment:
Q  248 aagcaatgcgagtggtaggagtcttgttcaaaaaa-tagaaaacttcttcaaatggaatgggaagtgaatgttaaacactcgtat 331  Q
    ||||||||||||||||||||||||||||||||||| |||||||   ||||||||||||||||||||||| |||||||||||||||    
T  32407607 aagcaatgcgagtggtaggagtcttgttcaaaaaattagaaaa---cttcaaatggaatgggaagtgaaggttaaacactcgtat 32407688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 16 - 341
Target Start/End: Complemental strand, 28575232 - 28574906
Alignment:
Q  16 ctgacggagcgtgtaaggatggtagcatcgcggggtgtggaggacttatccgaggttcgcaaggcgagtggttagcggggttctccaaatttttagggaa 115  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28575232 ctgacggagcgtgtaaggatggtagtatcgcggggtgtggaggacttatccgaggttcgcaaggcgagtggttagcggggttctccaaatttttagggaa 28575133  T
Q  116 gtgtgatgcttttattgcagagctatggggagttttggaaggtttctggtgtgcaaaacgtatggggttcactgtagtagaattaaatgtggattctttg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||| || | ||||| ||||||||||||||||||| |||||||||||||||||||||| ||    
T  28575132 gtgtgatgcttttattgcagagctatggggagttttggaaggtctccgatgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctctg 28575033  T
Q  216 gtggttgtgagtattattacgagtgggaaggaaagcaatgcgagtggtaggagtcttgttcaaaaaa-tagaaaacttcttcaaatggaatgggaagtga 314  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  28575032 gtggttgtgaatattattacgagtgggaaggaaagcaatgcgaggggtaggagtcttgttcaaaaaattagaaaacttcttcaaatggaatgggaagtga 28574933  T
Q  315 atgttaaacactcgtatcgcgaagcaa 341  Q
    | ||||||||||||||||| |||||||    
T  28574932 aggttaaacactcgtatcgtgaagcaa 28574906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 148 - 279
Target Start/End: Complemental strand, 38658365 - 38658234
Alignment:
Q  148 ttttggaaggtttctggtgtgcaaaacgtatggggttcactgtagtagaattaaatgtggattctttggtggttgtgagtattattacgagtgggaagga 247  Q
    ||||||||||| || ||||||| ||||| |||||||| |  | ||| |||||| | ||||||| |||||| || ||||  || |||| ||  ||||||||    
T  38658365 ttttggaaggtctccggtgtgcgaaacgaatggggtttatagcagttgaattacaagtggattttttggttgtggtgaacataattatgaaggggaagga 38658266  T
Q  248 aagcaatgcgagtggtaggagtcttgttcaaa 279  Q
     | |||| ||| ||| ||||||||||||||||    
T  38658265 tatcaattcgattggaaggagtcttgttcaaa 38658234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 16 - 341
Target Start/End: Complemental strand, 20633424 - 20633098
Alignment:
Q  16 ctgacggagcgtgtaaggatggtagcatcgcggggtgtggaggacttatccgaggttcgcaaggcgagtggttagcggggttctccaaatttttagggaa 115  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  20633424 ctgacggagcttgtaaggatggtagtatcgcggggtgtggaggacttatcagaggttcggaaggcgagtggttagcggggttctccaaatttttagggaa 20633325  T
Q  116 gtgtgatgcttttattgcagagctatggggagttttggaaggtttctggtgtgcaaaacgtatggggttcactgtagtagaattaaatgtggattctttg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  20633324 gtgtgatgcttttattgcagagctatggggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctttg 20633225  T
Q  216 gtggttgtgagtattattacgagtgggaaggaaagcaatgcgagtggtaggagtcttgttcaaaaaa-tagaaaacttcttcaaatggaatgggaagtga 314  Q
    |||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  20633224 gtggttgtgaatattattacgagtgagagggaaagcaatgcgagtggtaggagtcttgttcaaaaaattagaaaacttcttcaaatggaatggaaagtga 20633125  T
Q  315 atgttaaacactcgtatcgcgaagcaa 341  Q
    | ||||||||||||||||| |||||||    
T  20633124 aggttaaacactcgtatcgtgaagcaa 20633098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 16 - 341
Target Start/End: Complemental strand, 48823455 - 48823129
Alignment:
Q  16 ctgacggagcgtgtaaggatggtagcatcgcggggtgtggaggacttatccgaggttcgcaaggcgagtggttagcggggttctccaaatttttagggaa 115  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  48823455 ctgacggagcttgtaaggatggtagtatcgcggggtgtggaggacttatcagaggttcggaaggcgagtggttagcggggttctccaaatttttagggaa 48823356  T
Q  116 gtgtgatgcttttattgcagagctatggggagttttggaaggtttctggtgtgcaaaacgtatggggttcactgtagtagaattaaatgtggattctttg 215  Q
    | ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||  |||||||||| ||||||||||||| |||||||||||    
T  48823355 gagtgatgcttttattgcagagctatggggagttttggaaggtctccggtgtgcaaaacgtacagggttcactgcagtagaattaaatatggattctttg 48823256  T
Q  216 gtggttgtgagtattattacgagtgggaaggaaagcaatgcgagtggtaggagtcttgttcaaaaaa-tagaaaacttcttcaaatggaatgggaagtga 314  Q
    |||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  48823255 gtggttgtgaatattattacgagtgggggggaaagcaatgcgagtggtaggagtcttgttcaaaaaattagaaaacttcttcaaatggaatgggaagtga 48823156  T
Q  315 atgttaaacactcgtatcgcgaagcaa 341  Q
    | ||||||||||||||||| |||||||    
T  48823155 aggttaaacactcgtatcgtgaagcaa 48823129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 275 - 341
Target Start/End: Complemental strand, 11692120 - 11692056
Alignment:
Q  275 tcaaaaaatagaaaacttcttcaaatggaatgggaagtgaatgttaaacactcgtatcgcgaagcaa 341  Q
    ||||||| |||||||||||||||||||||||||||| |||| ||||||||  ||||||| |||||||    
T  11692120 tcaaaaattagaaaacttcttcaaatggaatgggaattgaaggttaaaca--cgtatcgtgaagcaa 11692056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 67 - 343
Target Start/End: Complemental strand, 38833471 - 38833194
Alignment:
Q  67 gaggttcgcaaggcgagtggttagcggggttctccaaatttttagggaagtgtgatgcttttattgcagagctatggggagttttggaaggtttctggtg 166  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||    
T  38833471 gaggttcggaaggcgagtggttagcggggttctccaaatttttagggaagtgtgatgcttttattgcagagctatggggagttttggaaggtctccggtg 38833372  T
Q  167 tgcaaaacgtatggggttcactgtagtagaattaaatgtggattctttggtggttgtgagtattattacgagtgggaaggaaagcaatgcgagtggtagg 266  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  38833371 tgcaaaacgtatggggttcactgcagtagaattaaatgtggattctttggtggttgtgaatattattacgagtgggaaggaaagcaatgcgagtggtagg 38833272  T
Q  267 agtcttgttcaaaaaa-tagaaaacttcttcaaatggaatgggaagtgaatgttaaacactcgtatcgcgaagcaact 343  Q
    ||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||    
T  38833271 agttttgttcaaaaaattagaaaacttcttcaaatggaatgggaagtgaaggttaaacattcgtatcgtgaagcaact 38833194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 139 - 341
Target Start/End: Original strand, 18185400 - 18185603
Alignment:
Q  139 tatggggagttttggaaggtttctggtgtgcaaaacgtatggggttcactgtagtagaattaaatgtggattctttggtggttgtgagtattattacgag 238  Q
    |||||||||||||||||||| || ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||    
T  18185400 tatggggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctttggtggttgtgaatattattacaag 18185499  T
Q  239 tgggaaggaaagcaatgcgagtggtaggagtcttgttcaaaaaa-tagaaaacttcttcaaatggaatgggaagtgaatgttaaacactcgtatcgcgaa 337  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| | ||||||| ||||||||| ||||||||| ||||||| |||    
T  18185500 tgggaaggaaagcaatgcgagtggtaggagtcttgttcaaaaaattagaaaaattctttagatggaataggaagtgaaggttaaacacccgtatcgtgaa 18185599  T
Q  338 gcaa 341  Q
    ||||    
T  18185600 gcaa 18185603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 38835907 - 38835871
Alignment:
Q  27 tgtaaggatggtagcatcgcggggtgtggaggactta 63  Q
    |||||||||||||| ||||||||||||||||||||||    
T  38835907 tgtaaggatggtagtatcgcggggtgtggaggactta 38835871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 341
Target Start/End: Complemental strand, 29752422 - 29752386
Alignment:
Q  305 tgggaagtgaatgttaaacactcgtatcgcgaagcaa 341  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  29752422 tgggaagtgaaggttaaacactcgtatcgtgaagcaa 29752386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 168; Significance: 6e-90; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 139 - 341
Target Start/End: Original strand, 39180666 - 39180869
Alignment:
Q  139 tatggggagttttggaaggtttctggtgtgcaaaacgtatggggttcactgtagtagaattaaatgtggattctttggtggttgtgagtattattacgag 238  Q
    |||||||||||||||||||| || ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  39180666 tatggggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctttggtggttgtgaatattattacgag 39180765  T
Q  239 tgggaaggaaagcaatgcgagtggtaggagtcttgttcaaaaaa-tagaaaacttcttcaaatggaatgggaagtgaatgttaaacactcgtatcgcgaa 337  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||    
T  39180766 tgggaaggaaagcaatgcgagtggtaggagtcttgttcaaaaaattagaaaacttcttcaaatggaatgggaagtgaaggttaaacactcgtatcgtgaa 39180865  T
Q  338 gcaa 341  Q
    ||||    
T  39180866 gcaa 39180869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 27 - 333
Target Start/End: Original strand, 18568658 - 18568965
Alignment:
Q  27 tgtaaggatggtagcatcgcggg-gtgtggaggacttatccgaggttcgcaaggcgagtggttagcggggttctccaaatttttagggaagtgtgatgct 125  Q
    |||||||||||||  || ||||| | ||||| | |||||  |||||| | ||||||| ||||||| |||||||| ||||||||| |||||||||   |||    
T  18568658 tgtaaggatggtaatattgcgggagcgtggatggcttattagaggtttgaaaggcgaatggttagtggggttcttcaaatttttggggaagtgtagcgct 18568757  T
Q  126 tttattgcagagctatggggagttttggaaggtttctggtgtgcaaaacgtatggggttcactgtagtagaattaaatgtggattctttggtggttgtga 225  Q
    ||| |||| |||||||||| ||||||||||||| || | |||||||||| |||||||||||||| |||| | |||||||||||||||||||||||| | |    
T  18568758 tttgttgcggagctatgggaagttttggaaggtctc-gatgtgcaaaacatatggggttcactgcagtatacttaaatgtggattctttggtggttataa 18568856  T
Q  226 gtattattacgagtgggaaggaaagcaatgcgagtggtaggagtcttgttcaaaaaa-tagaaaacttcttcaaatggaatgggaagtgaatgttaaaca 324  Q
     |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||| |||||||||||||||||  ||||||||| ||||||||    
T  18568857 atattattacgagtgggaaggaaagcaatgcaagtggtatgagtcttgttcaaaaaattagacaacttcttcaaatggaacaggaagtgaaagttaaaca 18568956  T
Q  325 ctcgtatcg 333  Q
    |||||||||    
T  18568957 ctcgtatcg 18568965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 242 - 333
Target Start/End: Complemental strand, 36123966 - 36123874
Alignment:
Q  242 gaaggaaagcaatgcgagtggtaggagtcttgttcaaaaaat-agaaaacttcttcaaatggaatgggaagtgaatgttaaacactcgtatcg 333  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||| |||||    
T  36123966 gaaggaaagcaattcgagtggtaggagtcttgttcaaaaaattagaaaacttcttcaaatggaatggaaagtgaaggttaaacactcatatcg 36123874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 291 - 341
Target Start/End: Complemental strand, 24323603 - 24323553
Alignment:
Q  291 ttcttcaaatggaatgggaagtgaatgttaaacactcgtatcgcgaagcaa 341  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  24323603 ttcttcaaatggaatgggaagtgaaggttaaacactcgtatcgtgaagcaa 24323553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 144 - 276
Target Start/End: Original strand, 14137690 - 14137822
Alignment:
Q  144 ggagttttggaaggtttctggtgtgcaaaacgtatggggttcactgtagtagaattaaatgtggattctttggtggttgtgagtattattacgagtggga 243  Q
    ||||||||||||||| || ||||||||| | |  |  ||||||||||| |||||||| ||||||||| |||| | || |||| |||||||| |||  ||     
T  14137690 ggagttttggaaggtctccggtgtgcaagaagattaaggttcactgtaatagaattatatgtggattttttgatcgtggtgaatattattatgaggaggc 14137789  T
Q  244 aggaaagcaatgcgagtggtaggagtcttgttc 276  Q
    |||| || ||||||||||||||||| |||||||    
T  14137790 aggagagtaatgcgagtggtaggagccttgttc 14137822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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