View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16796_low_21 (Length: 330)
Name: NF16796_low_21
Description: NF16796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16796_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 17 - 318
Target Start/End: Complemental strand, 10382170 - 10381869
Alignment:
| Q |
17 |
accaacaaccagcttgcaagtgagcgtgttacagcctctcattcttttaaaactttgtggtccaacacagtatcttatgcctatatatactttgctttat |
116 |
Q |
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| T |
10382170 |
accaacaaccagcttgcaagtgagcgtgttacagcctctcattcttttaagactttgtggtccaacacagtatcttatgcctatatatactttgctttat |
10382071 |
T |
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| Q |
117 |
tttattcacaaaatcatcaaaaaatatacaatcatacataaaatcatgaattcttctttgtggatttgtttgattttgttgtcatcatttgtatatgctt |
216 |
Q |
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| T |
10382070 |
tttattcacaaaatcatcaaaaaatacacaatcatacataaaatcatgaattcttctttgtggaattgtttgattttgttgtcatcatttgtatatgctt |
10381971 |
T |
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| Q |
217 |
cttttgctgcaaatccaaggactcctattgatgttccatttggtcgtaattatgtgcctacttgggcttatgatcatatcaaatacttaaatggtggttc |
316 |
Q |
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| T |
10381970 |
cttttgctgcaaatccaaggactcctattgatgttccatttggtcgtaattatgtgcctacttgggcttatgatcatatcaaatacttaaatggtggttc |
10381871 |
T |
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| Q |
317 |
tg |
318 |
Q |
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|| |
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| T |
10381870 |
tg |
10381869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 72 - 318
Target Start/End: Original strand, 10408122 - 10408369
Alignment:
| Q |
72 |
tgtggtccaacacagtatcttatgcctatatatactttgctttattttattcacaaaatcatcaaaaaatatacaatcata--cataaaatcatgaattc |
169 |
Q |
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| T |
10408122 |
tgtggtccaa-acaggaccttatgcctatatatactttgttttattttattcacaaaatcatcaaaaaactcaagttgaaaaacacaagatcatgaatta |
10408220 |
T |
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| Q |
170 |
ttctttgtggatttgtttgattttgttgtcatcatttgtatatgcttcttttgctgcaaatccaaggactcctattgatgttccatttggtcgtaattat |
269 |
Q |
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| T |
10408221 |
ttctttaaggatgtgtttgattttgttgtcatcatttgtatatgcttcttttgctgcaaatccaaggactcctattgatgttccatttggtcgtaattat |
10408320 |
T |
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| Q |
270 |
gtgcctacttgggcttatgatcatatcaaatacttaaatggtggttctg |
318 |
Q |
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| T |
10408321 |
gtgcctacttgggcttatgatcatatcaaatacttaaatggtggttctg |
10408369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 318
Target Start/End: Original strand, 32714188 - 32714230
Alignment:
| Q |
276 |
acttgggcttatgatcatatcaaatacttaaatggtggttctg |
318 |
Q |
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| T |
32714188 |
acttgggcttttgatcatatcaaatacttcaatggtggttctg |
32714230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 318
Target Start/End: Original strand, 32717376 - 32717418
Alignment:
| Q |
276 |
acttgggcttatgatcatatcaaatacttaaatggtggttctg |
318 |
Q |
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| T |
32717376 |
acttgggcttttgatcatatcaaatacttcaatggtggttctg |
32717418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 318
Target Start/End: Original strand, 32708189 - 32708261
Alignment:
| Q |
246 |
gatgttccatttggtcgtaattatgtgcctacttgggcttatgatcatatcaaatacttaaatggtggttctg |
318 |
Q |
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||||| || |||||||| || ||||| || |||||||||| |||||| ||||||||||| |||| ||||||| |
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| T |
32708189 |
gatgtaccttttggtcgaaactatgtaccaacttgggcttttgatcacatcaaatactttaatgaaggttctg |
32708261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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