View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16796_low_22 (Length: 330)
Name: NF16796_low_22
Description: NF16796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16796_low_22 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 15 - 330
Target Start/End: Original strand, 3945152 - 3945468
Alignment:
| Q |
15 |
caaaggtaccaaattaa-gatgaccttgaacttgaactgaggattaagtttattgttcactctagatcaaagaagtaactgatgaaccaatattagaagc |
113 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945152 |
caaaggtaccaaattaaagatgaccttgaacttgaactgaggattgagtttattgttcactctagatcaaagaagtaactgatgaaccaatattagaagc |
3945251 |
T |
|
| Q |
114 |
ttgatcgttccaaacaccaatagctgatgatgatgctgtattccagtaaagtgaagaagcagctggatcatacaaaccacccacatgctccatctctcct |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945252 |
ttgatcgttccaaacaccaatagctgatgatgatgctgtattccagtaaagtgaagaagcagctggatcatacaaaccacccacatgctccatctctcct |
3945351 |
T |
|
| Q |
214 |
tcatctttcttcattcctttctcacttccattccccaaattgttgaattccaagccctgaaaactgttgctaccatcattgatgaatttatgttgcagca |
313 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945352 |
tcatctttcttcgttcctttctcacttccattccccaaattgttgaattccaagccctgaaaactgttgctaccatcattgatgaatttatgttgcagca |
3945451 |
T |
|
| Q |
314 |
gagagggcataactgat |
330 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
3945452 |
gagaaggcataactgat |
3945468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University