View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16796_low_23 (Length: 326)

Name: NF16796_low_23
Description: NF16796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16796_low_23
NF16796_low_23
[»] chr8 (1 HSPs)
chr8 (11-308)||(9780556-9780849)


Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 11 - 308
Target Start/End: Complemental strand, 9780849 - 9780556
Alignment:
Q  11 gatgaacttttactggatcttttttacaatgaactttttgggacttaaatagttaattaatgtcacctaaagttggtattagtcgatttcataacatgaa 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||   ||||||    
T  9780849 gatgaacttttactggatcttttttacaatgaactttttgggacttaaatagttaattaatggcacctaaagttggtattagtcgatttca---catgaa 9780753  T
Q  111 ttttcttgcagcaaatgcataactaaatttggtgnnnnnnnataaatcataatagtaaagagccaaatcatgttacgtgggattggattcaaatgaaaat 210  Q
    ||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9780752 ttttcttgcagcaaatgcataactaaatttggtgtttttt-ataaatcataatagtaaagagccaaatcatgttacgtgggattggattcaaatgaaaat 9780654  T
Q  211 acaaagtgaaaaggataagatttagatggttgttcatgcaattcttaaagtgataaaactatcaatagttttcaatcatgttcaaaagctaataagcc 308  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  9780653 acaaagtgaaaaggataagatttagatggttgttcatgccattcttaaagtgataaaactatcagtagttttcaatcatgctcaaaagctaataagcc 9780556  T

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