View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16796_low_28 (Length: 285)
Name: NF16796_low_28
Description: NF16796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16796_low_28 |
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| [»] scaffold0038 (2 HSPs) |
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Alignment Details
Target: scaffold0038 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 143 - 261
Target Start/End: Original strand, 27039 - 27157
Alignment:
| Q |
143 |
ttataatttttatacgaatttgtgtgttacaataatacagcttatttaaatctttagttgaattgtgaaacgttgaagttgataatatatgaaatttgac |
242 |
Q |
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||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
27039 |
ttatatttattatacgaatttgtgtgttaaaataatacagcttatttaaatctttagttgaattgtgaaacgttgaagttgataagatatgaaatgtgac |
27138 |
T |
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| Q |
243 |
ggaagcttcactcccaatg |
261 |
Q |
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|||| ||||||||||||| |
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| T |
27139 |
agaagtttcactcccaatg |
27157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 120
Target Start/End: Original strand, 25621 - 25654
Alignment:
| Q |
87 |
gtcttctagaattttttacgtaagagaataatta |
120 |
Q |
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|||||||||||||||| ||||||||||||||||| |
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| T |
25621 |
gtcttctagaatttttgacgtaagagaataatta |
25654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 143 - 261
Target Start/End: Original strand, 28226541 - 28226659
Alignment:
| Q |
143 |
ttataatttttatacgaatttgtgtgttacaataatacagcttatttaaatctttagttgaattgtgaaacgttgaagttgataatatatgaaatttgac |
242 |
Q |
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||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
28226541 |
ttatatttattatacgaatttgtgtgttaaaataatacagcttatttaaatctttagttgaattgtgaaacgttgaagttgataagatatgaaatgtgac |
28226640 |
T |
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| Q |
243 |
ggaagcttcactcccaatg |
261 |
Q |
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|||| ||||||||||||| |
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| T |
28226641 |
agaagtttcactcccaatg |
28226659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 120
Target Start/End: Original strand, 28225123 - 28225156
Alignment:
| Q |
87 |
gtcttctagaattttttacgtaagagaataatta |
120 |
Q |
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|||||||||||||||| ||||||||||||||||| |
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| T |
28225123 |
gtcttctagaatttttgacgtaagagaataatta |
28225156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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