View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16796_low_3 (Length: 704)
Name: NF16796_low_3
Description: NF16796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16796_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 526; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 18 - 690
Target Start/End: Complemental strand, 7421398 - 7420737
Alignment:
| Q |
18 |
tttatattatgatcatatttcttttcctactttatgtcgtaaatggaactcgatgtaatagagatgaagactgcccatttatttgtaccggacctcagct |
117 |
Q |
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| T |
7421398 |
tttatattatgatcatatttcttttcctactttatgtcgtaaatggaactcgatgtaatagagatgaagactgcccatttatttgtaccggacctcagat |
7421299 |
T |
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| Q |
118 |
tccgaagtgtgtttcacatatttgcttctgtcttagcagttaagnnnnnnnnn-caaccaatttagttacttctaaacttataattttatttcaaaatat |
216 |
Q |
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| T |
7421298 |
tccgaagtgtgtttcacatatttgcttctgtcttagcagttaagttttttttttcaaccaatttagttacttctaaacttataattttatttcaaaatat |
7421199 |
T |
|
| Q |
217 |
tcttacacttatgattccacgcacaattcaatttttctctctttaacctttaaatttctttgacaggtggcaaagaagcatattgattatactttgcaag |
316 |
Q |
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| T |
7421198 |
tcttacacttatgattccacgcacaattcaatttttctctctttaacctttaaatttctttgacaggtggcaaagaagcatattgattatactttgcaag |
7421099 |
T |
|
| Q |
317 |
tattgttggtgttactgttgctgttagaatggaaggatgtgcatttagtcattgtggatttgccatgtttggagaatcat-tgtgtgnnnnnnnnagttt |
415 |
Q |
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| T |
7421098 |
tattgttggtgtta------------gaatggaaggatgtgcatttagtcattgtggatttgccatgtttggagaatcatctttgtgtcttttt-agttt |
7421012 |
T |
|
| Q |
416 |
tgttgttttatatctttcctatgaaagcgttcttgttcttttgttggtgtatttgttttaataaaaagttgactttatgtgagttgagctcctcaactta |
515 |
Q |
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| T |
7421011 |
tgttgttttatatctttcctatgaaagcgttcttgttcttttgttggtgtatttgttttaataaaaagttgactttatgtgagttgggctcctcaactta |
7420912 |
T |
|
| Q |
516 |
ttagagtcaagtcagaccttaaagctcgacgagctttaaagttacttatgaatgagtcaacttaattattaccaacttaaccaactttcattggctttgt |
615 |
Q |
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| T |
7420911 |
ttagagtcaagtcaaaccttaaagctcgacaagctttagagttacttatgaatgagtcaacttaattattaccaacttaaccaactttcattggctttgt |
7420812 |
T |
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| Q |
616 |
tggtgtattttagtcttgttgtatttcttgatgttttatttgggcatctttgttaagcttgttcttagtgatatt |
690 |
Q |
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| T |
7420811 |
tggtgtattttagtcttgttgtatttcttggtgttttatttgggcagctttgttaagcttgttcttactgatatt |
7420737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 602 - 687
Target Start/End: Complemental strand, 887512 - 887425
Alignment:
| Q |
602 |
ttcattggctttgttggtgtattttagtcttgttgtatttcttgatg--ttttatttgggcatctttgttaagcttgttcttagtgat |
687 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||| |||| |
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| T |
887512 |
ttcattggctctgttggtgtattttagtcttgttgtatttcttggtgttttttatttgggcagctttgttaagcttgttcttactgat |
887425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 421 - 535
Target Start/End: Complemental strand, 887654 - 887546
Alignment:
| Q |
421 |
ttttatatctttcctatgaaagcgttcttgttcttttgttggtgtatttgttttaataaaaagttgactttatgtgagttgagctcctcaacttattaga |
520 |
Q |
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|||| |||||||||||||||||| |||| |||||||||||||| ||||| ||||||||||| | |||||| |||||||||||||| ||| |||||| |
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| T |
887654 |
ttttttatctttcctatgaaagctttctggttcttttgttggtttattt-ttttaataaaacg-----tttatgcgagttgagctcctcgactcattaga |
887561 |
T |
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| Q |
521 |
gtcaagtcagacctt |
535 |
Q |
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|| |||||||||||| |
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| T |
887560 |
gttaagtcagacctt |
887546 |
T |
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