View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16796_low_33 (Length: 242)
Name: NF16796_low_33
Description: NF16796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16796_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 353013 - 352804
Alignment:
| Q |
20 |
agcgacaaccatatcatttcatctcttggattgtccaatgtgcctcttcaagcggcggatattgcaccatccatgaataagtatgttaaacgtgtgggcg |
119 |
Q |
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| T |
353013 |
agcgacaaccatatcatttcatctcttggattgtccaatgtgcctcttcaagcggcggatattgcaccatccatgaataagtatgttaaatgtgtgggcg |
352914 |
T |
|
| Q |
120 |
tttggagcaacataatgcttcagctccaagtaaatttcgcgagcttgttcaacaaatttctctttgcaaagagtatcaagcaacacattcatggattctg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
352913 |
tttggagcaacataatgcttcagctccaagtaaatttcgcgagcttgttcaacaaatttctctttgcaaagagtatcaagcaacacattcatggattctg |
352814 |
T |
|
| Q |
220 |
tattcatctc |
229 |
Q |
| |
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||||| |||| |
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| T |
352813 |
tattcttctc |
352804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 21 - 229
Target Start/End: Complemental strand, 10579793 - 10579584
Alignment:
| Q |
21 |
gcgacaaccatatcatttcatctcttggattgtccaatgtgcctcttcaag-cggcggatattgcaccatccatgaataagtatgttaaacgtgtgggcg |
119 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||| || |
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| T |
10579793 |
gcgacaaccatatcctttcatctcttggattgtccaatgtgcctcttcaacacgtcggatattacaccatccatgaataagtatgttaaacgtgtgagca |
10579694 |
T |
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| Q |
120 |
tttggagcaacataatgcttcagctccaagtaaatttcgcgagcttgttcaacaaatttctctttgcaaagagtatcaagcaacacattcatggattctg |
219 |
Q |
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|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
10579693 |
tttggagcaatgtaatgcttcagctccaagtaaatttcacgagcttgttcaacaaatttctctttacatagagtatcaagcaacacattcatggattctg |
10579594 |
T |
|
| Q |
220 |
tattcatctc |
229 |
Q |
| |
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||||| |||| |
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| T |
10579593 |
tattcttctc |
10579584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 21 - 229
Target Start/End: Complemental strand, 24578200 - 24577991
Alignment:
| Q |
21 |
gcgacaaccatatcatttcatctcttggattgtccaatgtgcctcttcaa-gcggcggatattgcaccatccatgaataagtatgttaaacgtgtgggcg |
119 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
24578200 |
gcgacaaccatatcctttcatctcttggattgtccaatgtgcctcttcaacgcgtcggatattgcaccatccatgaataagtatgttaaacgtgtgagcg |
24578101 |
T |
|
| Q |
120 |
tttggagcaacataatgcttcagctccaagtaaatttcgcgagcttgttcaacaaatttctctttgcaaagagtatcaagcaacacattcatggattctg |
219 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
24578100 |
tttggagcaatgtaatgcttcagctccaagtaaatttcgcgagcttgttcaacaaatttttctttgcaaagagtatcaagcaacacattcatggattctg |
24578001 |
T |
|
| Q |
220 |
tattcatctc |
229 |
Q |
| |
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||||| |||| |
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|
| T |
24578000 |
tattcttctc |
24577991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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