View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16796_low_38 (Length: 226)
Name: NF16796_low_38
Description: NF16796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16796_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 2 - 213
Target Start/End: Complemental strand, 28239098 - 28238887
Alignment:
| Q |
2 |
aggcttggtttacaagtctatctctgcagagcctgtatatgattgaattataacactgcaggagagtaaagtcaccttccccatcaatctggagtgcacg |
101 |
Q |
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| T |
28239098 |
aggcttggtttacaagtctatctttgcagagcctgtatatgatttaattataacaccgcaggagagtaaagtcaccttcctcatcagtctggagtgcacg |
28238999 |
T |
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| Q |
102 |
cctcaacaactgtattgctgtgtgcgtttctcctatcttacataatccttcaattagaacaagataacacttatggttcaactgaaaaccctttttaagt |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
28238998 |
cctcaacaactgtattgctgtgtgcgtttctcctatcttacataatcctttgattagaacaagataacacttatggtccaactgaaaaccctttttaagt |
28238899 |
T |
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| Q |
202 |
atgatgtaattg |
213 |
Q |
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|||||||||||| |
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| T |
28238898 |
atgatgtaattg |
28238887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 103 - 206
Target Start/End: Complemental strand, 28231415 - 28231312
Alignment:
| Q |
103 |
ctcaacaactgtattgctgtgtgcgtttctcctatcttacataatccttcaattagaacaagataacacttatggttcaactgaaaaccctttttaagta |
202 |
Q |
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||||||||||| |||||||| || ||||||||||||| ||||||||| | |||||| | ||||| | || |||||||||||||||||||||||||| |
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| T |
28231415 |
ctcaacaactggattgctgtttgagtttctcctatctcacataatccattgcttagaatataataactttcatcgttcaactgaaaaccctttttaagta |
28231316 |
T |
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| Q |
203 |
tgat |
206 |
Q |
| |
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|||| |
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| T |
28231315 |
tgat |
28231312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 127 - 213
Target Start/End: Complemental strand, 47569048 - 47568962
Alignment:
| Q |
127 |
gtttctcctatcttacataatccttcaattagaacaagataacacttatggttcaactgaaaaccctttttaagtatgatgtaattg |
213 |
Q |
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| T |
47569048 |
gtttctcctatctcacataatccattgatcagaataagataactatcatggttcaacagaaaaccgtttttaagtatgatgtcattg |
47568962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 4251620 - 4251663
Alignment:
| Q |
2 |
aggcttggtttacaagtctatctctgcagagcctgtatatgatt |
45 |
Q |
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| T |
4251620 |
aggcttggtttacaagtctatctttgcagagcctggatatgatt |
4251663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 28231525 - 28231470
Alignment:
| Q |
2 |
aggcttggtttacaagtctatctctgcagagcctgtatatgattgaattataacac |
57 |
Q |
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|||||||||| |||||||||||| ||||||| ||| |||| ||||||||||||||| |
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| T |
28231525 |
aggcttggttaacaagtctatctttgcagagtctgaatataattgaattataacac |
28231470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 23787069 - 23787015
Alignment:
| Q |
2 |
aggcttggtttacaagtctatctctgcagagcctgtatatgattgaattataaca |
56 |
Q |
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||||||||||||||||||| ||| || |||||||| |||||||||| |||||||| |
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| T |
23787069 |
aggcttggtttacaagtctttctttggagagcctgaatatgattgagttataaca |
23787015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 24621798 - 24621852
Alignment:
| Q |
2 |
aggcttggtttacaagtctatctctgcagagcctgtatatgattgaattataaca |
56 |
Q |
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||||||||||||||||||| ||| || |||||||| |||||||||| |||||||| |
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|
| T |
24621798 |
aggcttggtttacaagtctttctttggagagcctgaatatgattgagttataaca |
24621852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 671051 - 671091
Alignment:
| Q |
5 |
cttggtttacaagtctatctctgcagagcctgtatatgatt |
45 |
Q |
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|||||||||||||||||||| |||| |||||| |||||||| |
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| T |
671051 |
cttggtttacaagtctatctttgcacagcctgaatatgatt |
671091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 47569188 - 47569148
Alignment:
| Q |
2 |
aggcttggtttacaagtctatctctgcagagcctgtatatg |
42 |
Q |
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||||||||||||||||||||||| ||||||| ||| ||||| |
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| T |
47569188 |
aggcttggtttacaagtctatctttgcagagtctgaatatg |
47569148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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