View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16796_low_41 (Length: 215)
Name: NF16796_low_41
Description: NF16796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16796_low_41 |
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| [»] chr2 (9 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 32206060 - 32205864
Alignment:
| Q |
19 |
tacataccttattgtatccattatcaaccacgtctttatcttcttctcggttttgcaaatttatagtgcaatcgatatcctctatcacaagtatagaacg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32206060 |
tacataccttattgtatccattatcaaccacgtctttatcttcttctcggttttgcaaatttatagtgcaatcgatatcctctatcacaagtatagaacg |
32205961 |
T |
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| Q |
119 |
gttggacataccaagaataagttgcttcaagatcttattatcttgtacgtcagtgagatccaagtcatagatgtcatagttgagatagttagccatg |
215 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32205960 |
gttggacataccaagaataagctgcttcaagatcttattatcttgtacgtcagtgagatccaagtcatagatgtcatagttgagatagttagccatg |
32205864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 22 - 215
Target Start/End: Original strand, 32174767 - 32174960
Alignment:
| Q |
22 |
ataccttattgtatccattatcaaccacgtctttatcttcttctcggttttgcaaatttatagtgcaatcgatatcctctatcacaagtatagaacggtt |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||| || |
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| T |
32174767 |
ataccttattgtatccattatcaaccacgtctttatcttcttctcggttctgcaaatttatagtgcaatcaatatcctctatcactagtatagaacgctt |
32174866 |
T |
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| Q |
122 |
ggacataccaagaataagttgcttcaagatcttattatcttgtacgtcagtgagatccaagtcatagatgtcatagttgagatagttagccatg |
215 |
Q |
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| T |
32174867 |
gggaatgtcaagaataagttgcttcaagcgcttattatcttgtacatcagtgagatccaagtcatagatatcatacttgagatagttagccatg |
32174960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 19 - 215
Target Start/End: Original strand, 32158505 - 32158701
Alignment:
| Q |
19 |
tacataccttattgtatccattatcaaccacgtctttatcttcttctcggttttgcaaatttatagtgcaatcgatatcctctatcacaagtatagaacg |
118 |
Q |
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|||||||||||||||||||||||||||| | |||| ||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||| |
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| T |
32158505 |
tacataccttattgtatccattatcaacaatttcttcatcttcttctcggttttgcaattttacggtgcaatcaatatcctctatcacaagtatagaacg |
32158604 |
T |
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| Q |
119 |
gttggacataccaagaataagttgcttcaagatcttattatcttgtacgtcagtgagatccaagtcatagatgtcatagttgagatagttagccatg |
215 |
Q |
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|||||||| |||||||||||||||||||| ||||||||||||||| | ||||||||| || |||||||| |||||||||||||||||||||||| |
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| T |
32158605 |
attggacatgtcaagaataagttgcttcaagcgcttattatcttgtacattagtgagatctaaatcatagatatcatagttgagatagttagccatg |
32158701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 22 - 215
Target Start/End: Original strand, 32182806 - 32182999
Alignment:
| Q |
22 |
ataccttattgtatccattatcaaccacgtctttatcttcttctcggttttgcaaatttatagtgcaatcgatatcctctatcacaagtatagaacggtt |
121 |
Q |
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|||||||||||| |||||||| ||| || ||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
32182806 |
ataccttattgtctccattattaacaacttctttctcttcttctcggttctgcaaatttatagtgcaatcaatatcctctatcacaagtatagcacggtt |
32182905 |
T |
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| Q |
122 |
ggacataccaagaataagttgcttcaagatcttattatcttgtacgtcagtgagatccaagtcatagatgtcatagttgagatagttagccatg |
215 |
Q |
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| T |
32182906 |
ggacatgctgagaataagttgcttcaaggtcttattatcccctacatcggtgagatccaagtcatagatatcatagttgagatagttagccatg |
32182999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 29 - 215
Target Start/End: Original strand, 32157097 - 32157283
Alignment:
| Q |
29 |
attgtatccattatcaaccacgtctttatcttcttctcggttttgcaaatttatagtgcaatcgatatcctctatcacaagtatagaacggttggacata |
128 |
Q |
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||||| |||||||||||| | ||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||| | |||||||||||| |
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| T |
32157097 |
attgtctccattatcaacagcttctttctcttcttctcggttctgcaaatttatagtgcaatcaatatcctctatcacaagtatcgcacggttggacatg |
32157196 |
T |
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| Q |
129 |
ccaagaataagttgcttcaagatcttattatcttgtacgtcagtgagatccaagtcatagatgtcatagttgagatagttagccatg |
215 |
Q |
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| ||||| |||||||||||| |||||||||| | ||| || |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32157197 |
ctgagaattagttgcttcaagctcttattatcctctacatctgtgagatccaagtcatagatatcatagttgagatagttagccatg |
32157283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 32211787 - 32211585
Alignment:
| Q |
19 |
tacataccttattgtatccattatcaaccacgtctttat------cttcttctcggttttgcaaatttatagtgcaatcgatatcctctatcacaagtat |
112 |
Q |
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|||||||||||||||||||||||||||| || |||| || ||||||||||||| |||| || ||||||||||| || ||||||||||||||||| |
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| T |
32211787 |
tacataccttattgtatccattatcaacaacttcttcattttcatcttcttctcggttctgcaggttaatagtgcaatcaatgtcctctatcacaagtat |
32211688 |
T |
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| Q |
113 |
agaacggttggacataccaagaataagttgcttcaagatcttattatcttgtacgtcagtgagatccaagtcatagatgtcatagttgagatagttagcc |
212 |
Q |
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|||||||||||||||||||| ||||||||||||||| |||||||||| ||| |||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
32211687 |
agaacggttggacataccaatgataagttgcttcaagctcttattatcccctacatcagtgagatccaagtcaaagatatcatagttgagatagttagcc |
32211588 |
T |
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| Q |
213 |
atg |
215 |
Q |
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||| |
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| T |
32211587 |
atg |
32211585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 21 - 215
Target Start/End: Original strand, 32111095 - 32111289
Alignment:
| Q |
21 |
cataccttattgtatccattatcaaccacgtctttatcttcttctcggttttgcaaatttatagtgcaatcgatatcctctatcacaagtatagaacggt |
120 |
Q |
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||||| ||||||| ||||||| ||| || |||| ||||||||||||||||||||| |||| | |||||| |||||||||||||||||||||||||||| |
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| T |
32111095 |
catacattattgtggccattatgaacaacttcttcatcttcttctcggttttgcaattttacggagcaatcaatatcctctatcacaagtatagaacggt |
32111194 |
T |
|
| Q |
121 |
tggacataccaagaataagttgcttcaagatcttattatcttgtacgtcagtgagatccaagtcatagatgtcatagttgagatagttagccatg |
215 |
Q |
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||||||| | |||||||||||||||||| |||||||||| ||| | ||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32111195 |
tggacatgctgagaataagttgcttcaagctcttattatcccctacattagtgagatccaagtcatagatatcatagttgagatagttagccatg |
32111289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 51 - 215
Target Start/End: Original strand, 32119147 - 32119311
Alignment:
| Q |
51 |
tctttatcttcttctcggttttgcaaatttatagtgcaatcgatatcctctatcacaagtatagaacggttggacataccaagaataagttgcttcaaga |
150 |
Q |
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||||| |||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||| |||| || |||||||||||||||||||| |
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| T |
32119147 |
tctttctcttcttctcggttctgcaaatttatattgcaatcaatatcctctatcacaagtatagaacgattgggaatgtcaagaataagttgcttcaagc |
32119246 |
T |
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| Q |
151 |
tcttattatcttgtacgtcagtgagatccaagtcatagatgtcatagttgagatagttagccatg |
215 |
Q |
| |
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|||||||||| | ||| | ||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32119247 |
tcttattatcctctacattagtgagatccaagtcatagatatcatagttgagatagttagccatg |
32119311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 21 - 159
Target Start/End: Original strand, 32534304 - 32534448
Alignment:
| Q |
21 |
cataccttattgtatccattatcaaccacgtctttat------cttcttctcggttttgcaaatttatagtgcaatcgatatcctctatcacaagtatag |
114 |
Q |
| |
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|||||||||||||||||||||||||| || |||| || ||||||||||||| |||| || ||||||||||| || ||||||||||||||||||| |
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| T |
32534304 |
cataccttattgtatccattatcaacaacttcttcattttcatcttcttctcggttctgcaggttaatagtgcaatcaatgtcctctatcacaagtatag |
32534403 |
T |
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| Q |
115 |
aacggttggacataccaagaataagttgcttcaagatcttattat |
159 |
Q |
| |
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||||||||||||| ||||||||||||| | || || ||||||||| |
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| T |
32534404 |
aacggttggacatgccaagaataagtttcctcgagctcttattat |
32534448 |
T |
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