View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16796_low_6 (Length: 531)
Name: NF16796_low_6
Description: NF16796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16796_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 10 - 233
Target Start/End: Original strand, 43759800 - 43760021
Alignment:
| Q |
10 |
attattctttatatagaaaatattttaaataaattatttcctttttgtcttgaatttaatttaatgtcatgatacacacatgatgaatgttaatcttgtg |
109 |
Q |
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| T |
43759800 |
attattctttatatagaaaatattttaaataaattatttcctttttgtcttgaatttaatttaatgtcatgatacacacatgatgaatgttaatcttgtg |
43759899 |
T |
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| Q |
110 |
ccactgattatgattaaaaattaatgacaccgaaattgtctcttttgtttctctttctatgtctatgtgaataatgtgtg--ttttggtttttgttatga |
207 |
Q |
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| T |
43759900 |
ccactgattatgattaaaaattaatgacaccgaaattgtctct----tttctctttctatgtctatgtgaataatgtgtgttttttggtttttgttatga |
43759995 |
T |
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| Q |
208 |
cacagaaagcgataggtggggattac |
233 |
Q |
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| T |
43759996 |
cacagaaagcgataggtggggattac |
43760021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 269 - 514
Target Start/End: Original strand, 43760060 - 43760320
Alignment:
| Q |
269 |
tgttgttgttttagtatagagtggtggttgttgcagagacagacaagagaagcagtag---------------tagcctagcttgttcttgtttctcggg |
353 |
Q |
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| T |
43760060 |
tgttgttgttttagtatagagtggtggttgttgcagagacagacaagagaagtagtagtagcagtagttgtagtagcctagcttgttcttgtttctcggg |
43760159 |
T |
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| Q |
354 |
tcgcgccgctcgtgtttctttgtcgctcctgcgtgcgtgtatgttgttcttcatcttcttctaattgcacttgttgttttttcaatcccaataacctcaa |
453 |
Q |
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| T |
43760160 |
tcgcgccgctcgtgtttgtttgtcgctcctgcgtgcgtgtgtgttgttcttcatcttcttctaattgcactttttgttttttcaatcccaataacctcaa |
43760259 |
T |
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| Q |
454 |
atctcgaggcttgttttgttttctcaaagggtgacacgacacaatctctctttcttcttcc |
514 |
Q |
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| T |
43760260 |
atctcgaggcttgttttgttttctcaaagggtgacacgacacaatctctctttcttcttcc |
43760320 |
T |
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