View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16796_low_7 (Length: 525)
Name: NF16796_low_7
Description: NF16796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16796_low_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 212 - 506
Target Start/End: Complemental strand, 4177514 - 4177219
Alignment:
| Q |
212 |
cacgagtgagtgggaggaggcaacaacatgattggtgcgtattgaattggagactcggcaacgagcaagttaaatcaccatttcaacaacatgatttgtg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4177514 |
cacgagtgagtgggaggaggcaacaacatgattggtacgcattgcattggagactcgacaacgagcaagttaaatcaccatttcaacaacatgatttgtg |
4177415 |
T |
|
| Q |
312 |
tttttggcaaagcatatggagtcgagattaaatatctgcaatgttatttttcatagaagaagtgacaagcatcaccaaaacttacactta--cacataat |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
4177414 |
tttttggcaaagcatatggagtcgagattaaacatctgcaatgttatttcttatagaagaagtgacaagcatcatcaaaacttacacttacacacataat |
4177315 |
T |
|
| Q |
410 |
ttataaggtcttagttcgaacttatggacgtttaaccaaacaataacgtgttggttagttaagctatctgggacatttaccattgtaaattttacat |
506 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4177314 |
ttataaggttttagttcgaactta-ggacgtttaaccaaacaatatcgtgttggttagttaaactatctgggacatttaccattgtaaattttacat |
4177219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 8 - 165
Target Start/End: Complemental strand, 4177670 - 4177513
Alignment:
| Q |
8 |
attttatttaactaataatagcgggcttgcaatttcactttcaaaaggttatttttaaaagatatgtagttggaataacttagttgtacaactacaaagt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4177670 |
attttatttaactaataatagcgggcttgcaatttcactttcaaaaggttatttttaaaagatatctagttggaataacttagttgtacaactacaaagt |
4177571 |
T |
|
| Q |
108 |
acatcaaacatagaaaatgtttgttgtctagaacttaatcaccaaccatgcaaactca |
165 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4177570 |
acatcaaacataaaaaatgtttgttgtctagaacttaatcaccaaccatgcaaactca |
4177513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University