View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16796_low_8 (Length: 511)
Name: NF16796_low_8
Description: NF16796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16796_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 16 - 502
Target Start/End: Original strand, 29768016 - 29768502
Alignment:
| Q |
16 |
acgttgatgataccaaagttttgaggattggtgatcagattcatgttcatttgataagcattggcaacaataaacacatcacatcccagttgagtgttga |
115 |
Q |
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| T |
29768016 |
acgttgatgataccaaagttttgaggattggtgatcagattcatgttcatttgataagcattggcaacaataaacacatcacatcccagttgagtgttga |
29768115 |
T |
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| Q |
116 |
ggtctttagtcatttgaagcaaaagttggttgaaaaattgagcagcttgttgtatctcatttacacactctccatttatgctcctagtagcaagttgagc |
215 |
Q |
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| T |
29768116 |
ggtctttagtcatttgaagcaaaagttggttgaaaaattgagcagcttgttgtatctcatttacacactctccatttatgctcctagtagcaagttgagc |
29768215 |
T |
|
| Q |
216 |
aggaatacaacccaatggaccgactccggtcacaagctcccttctagctcccaagtcaaacaaccgctgcattacaatttacatatcacttagactctgt |
315 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
29768216 |
aggaatacaacccaatggaccgactccggtcacaagcacccttctagctcccaagtcaaacaacctctgcattacaatttacatatcacttagactctgt |
29768315 |
T |
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| Q |
316 |
tcggtaaattaatttataacggataatttaacaaattaaatttgaaagagagaatcaccataagaatatttcgatactgagagacaagataggtgcagta |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29768316 |
tcggtaaattaatttataacggataatttaacaaattaaatttgaaagagagaatcaccataagaatatttcgatactgagagacaagataggtgcagta |
29768415 |
T |
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| Q |
416 |
ttgttgtggcacggtgaattgacgagacctagctgaaaatggagtgagaaaatagttgttgacaaaatcattaccaccaagtattat |
502 |
Q |
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| T |
29768416 |
ttgttgtggcacggtgaattgacgagacctagctgaaaatggagtgagaaaatagttgttgacaaaatcattaccaccaagtgttat |
29768502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 496
Target Start/End: Complemental strand, 48084499 - 48084435
Alignment:
| Q |
432 |
aattgacgagacctagctgaaaatggagtgagaaaatagttgttgacaaaatcattaccaccaag |
496 |
Q |
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||||||||||| || |||||||| ||| | | |||||||||||||||||||||| |||||||| |
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| T |
48084499 |
aattgacgagatcttgctgaaaaaggaaccaaataatagttgttgacaaaatcattgccaccaag |
48084435 |
T |
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