View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16796_low_9 (Length: 500)

Name: NF16796_low_9
Description: NF16796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16796_low_9
NF16796_low_9
[»] chr3 (1 HSPs)
chr3 (313-490)||(37602064-37602238)
[»] chr1 (1 HSPs)
chr1 (313-490)||(46558753-46558927)
[»] chr5 (1 HSPs)
chr5 (309-412)||(22778625-22778728)
[»] chr8 (1 HSPs)
chr8 (142-257)||(17931981-17932096)
[»] chr6 (1 HSPs)
chr6 (170-257)||(23602332-23602419)
[»] scaffold0838 (1 HSPs)
scaffold0838 (163-251)||(1818-1906)
[»] scaffold0832 (1 HSPs)
scaffold0832 (163-251)||(1849-1937)
[»] chr4 (2 HSPs)
chr4 (163-223)||(11012773-11012833)
chr4 (154-245)||(12189863-12189954)
[»] chr7 (1 HSPs)
chr7 (116-251)||(5760659-5760794)


Alignment Details
Target: chr3 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 313 - 490
Target Start/End: Original strand, 37602064 - 37602238
Alignment:
Q  313 ttattgaaatagatgtaaatgagtaggcatcagctactaccattaaaatatggctgcaagttctacacatgaataatgccatcaaacccactactttaca 412  Q
    ||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||     
T  37602064 ttattcaaatagatgtaaatgaataggcatcagctactaccatcaaaatatggctgcaagttctacacatgagtaatg-catcaaatccactactttacg 37602162  T
Q  413 atctaaatgtaacgtgtccaattggagctttttctacaaatctgcaaattgtacttcaaatccaatgcatggcctatg 490  Q
     || ||||||||||||||  ||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||    
T  37602163 gtccaaatgtaacgtgtcatattggagctttt--tacaaatctgcaaattgtacttcaaatctaatgcatggcctatg 37602238  T

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Target: chr1 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 313 - 490
Target Start/End: Complemental strand, 46558927 - 46558753
Alignment:
Q  313 ttattgaaatagatgtaaatgagtaggcatcagctactaccattaaaatatggctgcaagttctacacatgaataatgccatcaaacccactactttaca 412  Q
    ||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||     
T  46558927 ttattcaaatagatgtaaatgaataggcatcagctactaccatcaaaatatggctgcaagttctacacatgagtaatg-catcaaatccactactttacg 46558829  T
Q  413 atctaaatgtaacgtgtccaattggagctttttctacaaatctgcaaattgtacttcaaatccaatgcatggcctatg 490  Q
     || ||||||||||||||  ||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||    
T  46558828 gtccaaatgtaacgtgtcatattggagctttt--tacaaatctgcaaattgtacttcaaatctaatgcatggcctatg 46558753  T

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Target: chr5 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 309 - 412
Target Start/End: Original strand, 22778625 - 22778728
Alignment:
Q  309 cacattattgaaatagatgtaaatgagtaggcatcagctactaccattaaaatatggctgcaagttctacacatgaataatgccatcaaa-cccactact 407  Q
    ||||||||| |||||||||||||||| ||||||||| |||||  ||| |||||||||||||||||||||||| ||||||||| ||||||| |||||||||    
T  22778625 cacattattcaaatagatgtaaatgaataggcatcaactacttacatcaaaatatggctgcaagttctacacgtgaataatg-catcaaaccccactact 22778723  T
Q  408 ttaca 412  Q
    |||||    
T  22778724 ttaca 22778728  T

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Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 142 - 257
Target Start/End: Complemental strand, 17932096 - 17931981
Alignment:
Q  142 ggttcatcacctataagctttatctcatgactctttagagagcttatcagattctccatgctaagcttgttcaagtcttttgtttcctaaatagttgtaa 241  Q
    ||||||| | |||| ||||  ||||| |||||||| |||||| |||||||||||| || |||||| ||||||||||| |||| ||| | ||| |||||||    
T  17932096 ggttcataaactattagctccatctcttgactcttcagagaggttatcagattcttcaggctaagattgttcaagtcctttgcttcgtgaatggttgtaa 17931997  T
Q  242 ccttaggtctccactt 257  Q
    ||||||| ||||||||    
T  17931996 ccttaggcctccactt 17931981  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 170 - 257
Target Start/End: Complemental strand, 23602419 - 23602332
Alignment:
Q  170 gactctttagagagcttatcagattctccatgctaagcttgttcaagtcttttgtttcctaaatagttgtaaccttaggtctccactt 257  Q
    ||||||| |||||||||||||| ||||||| ||||||  |||| |||| ||||| |||||| |||| ||||||||| || ||||||||    
T  23602419 gactcttcagagagcttatcaggttctccaagctaagtctgtttaagtattttgcttcctatatagatgtaacctttgggctccactt 23602332  T

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Target: scaffold0838 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0838
Description:

Target: scaffold0838; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 251
Target Start/End: Original strand, 1818 - 1906
Alignment:
Q  163 atctcatgactctttagagagcttatcagattctccatgctaagcttgttcaagtcttttgtttcctaaatagttgtaaccttaggtct 251  Q
    |||||||| || || ||||| ||||||||||| |||| ||| |||||||||| ||| |||| ||||| ||| ||||||||||| |||||    
T  1818 atctcatgtcttttgagagaacttatcagattttccaagcttagcttgttcatgtcctttgcttcctgaatggttgtaacctttggtct 1906  T

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Target: scaffold0832 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0832
Description:

Target: scaffold0832; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 251
Target Start/End: Original strand, 1849 - 1937
Alignment:
Q  163 atctcatgactctttagagagcttatcagattctccatgctaagcttgttcaagtcttttgtttcctaaatagttgtaaccttaggtct 251  Q
    |||||||| || || ||||| ||||||||||| |||| ||| |||||||||| ||| |||| ||||| ||| ||||||||||| |||||    
T  1849 atctcatgtcttttgagagaacttatcagattttccaagcttagcttgttcatgtcctttgcttcctgaatggttgtaacctttggtct 1937  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 11012833 - 11012773
Alignment:
Q  163 atctcatgactctttagagagcttatcagattctccatgctaagcttgttcaagtcttttg 223  Q
    ||||||||||||| |||||||||||||||| ||||||  | |||||||||||| |||||||    
T  11012833 atctcatgactctctagagagcttatcagagtctccaatccaagcttgttcaattcttttg 11012773  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 154 - 245
Target Start/End: Original strand, 12189863 - 12189954
Alignment:
Q  154 ataagctttatctcatgactctttagagagcttatcagattctccatgctaagcttgttcaagtcttttgtttcctaaatagttgtaacctt 245  Q
    ||||||| |||| ||||| | || ||||| ||||||||||||| || ||| ||||||||||| || |||| ||||| ||| |||||||||||    
T  12189863 ataagctatatcacatgaattttgagagaacttatcagattcttcaggcttagcttgttcaaatcctttgcttcctgaatggttgtaacctt 12189954  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 251
Target Start/End: Original strand, 5760659 - 5760794
Alignment:
Q  116 gagcaatagacttagatttcttcattggttcatcacctataagctttatctcatgactctttagagagcttatcagattctccatgctaagcttgttcaa 215  Q
    |||||||||||||| ||| |||   ||||||||| ||   |||||  |||||||||||||| |||||||| || ||| | |||| ||| | ||| |||||    
T  5760659 gagcaatagacttatattgcttagctggttcatctccatcaagctcaatctcatgactcttgagagagctaatgagactttccaagcttaccttattcaa 5760758  T
Q  216 gtcttttgtttcctaaatagttgtaaccttaggtct 251  Q
     || |||| ||||| |||||||||| |||| |||||    
T  5760759 ttcctttgcttcctgaatagttgtagcctttggtct 5760794  T

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