View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16797_high_17 (Length: 353)
Name: NF16797_high_17
Description: NF16797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16797_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 14 - 339
Target Start/End: Original strand, 43218752 - 43219077
Alignment:
| Q |
14 |
agacaaacaatcagccctttgctaatttcaaccgtagcagtattcgttgaagatgaagccttgtgtgtgtaactgatatctaaattgtagtcttgccctt |
113 |
Q |
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| T |
43218752 |
agacaaacaatcagccctttgctaatttcaaccatagcagtattcgttgaagatgaagccttgtgtgtgtaactgatatctaaatggtagtcttgccctt |
43218851 |
T |
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| Q |
114 |
aggtttaagtcccgcccttagttttgtattaaatatatgatgtatttatgagcactggcatgtaaagattgcaaacattgtatcatacaaaaaagttgat |
213 |
Q |
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| T |
43218852 |
aggtttaagtcccgcccttagttttgtattaaatatatgatgtatttatgagcactggcatgtaaagattgcaaacattgtatcatacaaaaaagttgat |
43218951 |
T |
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| Q |
214 |
aagatgtattattattagtttgtgttacaaatctaaattttatgttcttacccatattcctttcatttttggttattaagatagaatgaaatcgatgaca |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43218952 |
aagatgtattattattagtttgtgttacaaatctaaattttatgttcttacccatattcctttcatttttggttattaagatagaatgaaatcgatgaca |
43219051 |
T |
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| Q |
314 |
ttttgttttgttgtgagggaaatctg |
339 |
Q |
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| T |
43219052 |
ttttgttttgttgtgaaggaaatctg |
43219077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 128 - 265
Target Start/End: Complemental strand, 43169495 - 43169358
Alignment:
| Q |
128 |
cccttagttttgtattaaatatatgatgtatttatgagcactggcatgtaaagattgcaaacattgtatcatacaaaaaagttgataagatgtattatta |
227 |
Q |
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| T |
43169495 |
cccttagttttgtataaaatatatgcttaatttatgagcaccggcatgtaaagattgcaaacattgtattatacaaaaaagttgataagatatattatta |
43169396 |
T |
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| Q |
228 |
ttagtttgtgttacaaatctaaattttatgttcttacc |
265 |
Q |
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| T |
43169395 |
ttagtttctgttacaaatctaaatttgatgttcttacc |
43169358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 14 - 88
Target Start/End: Complemental strand, 43169578 - 43169504
Alignment:
| Q |
14 |
agacaaacaatcagccctttgctaatttcaaccgtagcagtattcgttgaagatgaagccttgtgtgtgtaactg |
88 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||| |
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| T |
43169578 |
agacaaacaatgagccctttgctaatttcaaccgtagcagtatccgttgaagatgaagtcttgtgtctgtaactg |
43169504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 281 - 339
Target Start/End: Complemental strand, 43169100 - 43169042
Alignment:
| Q |
281 |
tttggttattaagatagaatgaaatcgatgacattttgttttgttgtgagggaaatctg |
339 |
Q |
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| T |
43169100 |
tttggttattaagatagaatgaaatcgatgacattttgttttgttgtgaaggaaatctg |
43169042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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