View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16797_high_2 (Length: 559)

Name: NF16797_high_2
Description: NF16797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16797_high_2
NF16797_high_2
[»] chr2 (10 HSPs)
chr2 (6-391)||(30613073-30613458)
chr2 (401-543)||(30612946-30613088)
chr2 (93-212)||(41375214-41375330)
chr2 (426-543)||(41375581-41375694)
chr2 (137-194)||(38991712-38991769)
chr2 (226-353)||(41375374-41375500)
chr2 (137-194)||(16092423-16092480)
chr2 (137-194)||(20264745-20264802)
chr2 (121-187)||(19467093-19467161)
chr2 (122-165)||(32625541-32625585)
[»] chr8 (6 HSPs)
chr8 (22-543)||(24698926-24699437)
chr8 (22-202)||(22814483-22814665)
chr8 (122-194)||(9882315-9882388)
chr8 (122-194)||(40387581-40387654)
chr8 (137-194)||(42145435-42145492)
chr8 (137-181)||(1216750-1216794)
[»] chr3 (10 HSPs)
chr3 (70-313)||(11455512-11455751)
chr3 (122-194)||(3472973-3473046)
chr3 (122-165)||(3289531-3289575)
chr3 (122-165)||(18539311-18539355)
chr3 (122-165)||(39728852-39728896)
chr3 (110-165)||(10734492-10734547)
chr3 (137-194)||(3586052-3586109)
chr3 (137-194)||(15778369-15778426)
chr3 (122-165)||(18694761-18694805)
chr3 (122-165)||(18710280-18710324)
[»] chr7 (9 HSPs)
chr7 (388-543)||(10994140-10994292)
chr7 (122-204)||(22530172-22530255)
chr7 (122-194)||(18148795-18148868)
chr7 (122-189)||(11509812-11509880)
chr7 (109-202)||(13386670-13386761)
chr7 (122-194)||(34705843-34705916)
chr7 (70-189)||(6019282-6019400)
chr7 (116-163)||(20465308-20465356)
chr7 (109-165)||(21501063-21501119)
[»] chr6 (7 HSPs)
chr6 (71-199)||(17729435-17729564)
chr6 (122-194)||(19770200-19770273)
chr6 (122-194)||(22468811-22468884)
chr6 (29-116)||(17729360-17729447)
chr6 (122-194)||(9547705-9547778)
chr6 (122-165)||(19891778-19891822)
chr6 (110-165)||(13250538-13250594)
[»] chr4 (14 HSPs)
chr4 (70-324)||(10221801-10222040)
chr4 (101-208)||(9620522-9620628)
chr4 (122-194)||(4529858-4529931)
chr4 (122-194)||(23972913-23972986)
chr4 (70-204)||(9854078-9854211)
chr4 (122-194)||(11150394-11150467)
chr4 (122-194)||(25127349-25127422)
chr4 (67-204)||(25267166-25267301)
chr4 (122-194)||(15703509-15703582)
chr4 (478-543)||(9853635-9853697)
chr4 (226-313)||(9853939-9854026)
chr4 (127-165)||(9565150-9565188)
chr4 (113-202)||(34644896-34644985)
chr4 (55-96)||(9854218-9854259)
[»] chr1 (6 HSPs)
chr1 (63-199)||(19474407-19474540)
chr1 (137-194)||(9132579-9132636)
chr1 (122-181)||(12785061-12785121)
chr1 (137-194)||(23633330-23633387)
chr1 (124-204)||(52272723-52272804)
chr1 (138-194)||(41138059-41138115)
[»] scaffold1200 (1 HSPs)
scaffold1200 (427-543)||(2087-2200)
[»] chr5 (3 HSPs)
chr5 (17-204)||(28415244-28415435)
chr5 (122-204)||(39437119-39437202)
chr5 (137-194)||(29497065-29497122)
[»] scaffold0430 (3 HSPs)
scaffold0430 (87-199)||(9615-9727)
scaffold0430 (55-112)||(9773-9830)
scaffold0430 (226-321)||(9452-9548)
[»] scaffold0281 (1 HSPs)
scaffold0281 (122-194)||(647-720)
[»] scaffold0024 (1 HSPs)
scaffold0024 (122-194)||(106756-106829)
[»] scaffold0498 (1 HSPs)
scaffold0498 (122-166)||(12095-12140)
[»] scaffold0323 (1 HSPs)
scaffold0323 (122-194)||(15302-15375)
[»] scaffold0688 (2 HSPs)
scaffold0688 (126-165)||(971-1010)
scaffold0688 (126-165)||(7540-7579)
[»] scaffold0009 (1 HSPs)
scaffold0009 (122-165)||(221850-221894)


Alignment Details
Target: chr2 (Bit Score: 362; Significance: 0; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 6 - 391
Target Start/End: Complemental strand, 30613458 - 30613073
Alignment:
Q  6 acatcatcatgatcaccaagttaaatacatagtattcacacatattcatcatcgtcaaatcacacatctttcacatagttacacatggtcaagtgcacat 105  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30613458 acatcatcatgatcaccaagttaaatatatagtattcacacatattcatcatcgtcaaatcacacatctttcacatagttacacatggtcaagtgcacat 30613359  T
Q  106 cttccacatagactaatatgtatgcaatgttctaactcgactttatatgcatgtggtaccttttttgaatatcagaggtatgtttctgagtgatcccact 205  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||     
T  30613358 cttccacatagactcatatgtatgcaatgttctaactcgactttatatgcatgtggtaccttttttggatatcagaggtatgtttctgagtgatcccacc 30613259  T
Q  206 atcacttctcactgtcactagactgaccatgagtggatgaacatcttatcacgactcgacaatgcataaattcacatgactcgaaaattcacatcaacaa 305  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30613258 atcacttctcactgtcactggactgaccatgagtggatgaacatcttatcacgactcgacaatgcataaattcacatgactcgaaaattcacatcaacaa 30613159  T
Q  306 catcgtcacatcatatatttactgtcattatatcaccatgatcatttttaacctcgtcataccatcatcatatcaacgtcattata 391  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30613158 catcgtcacatcatatatttactgtcactatatcaccatgatcatttttaacctcgtcataccatcatcatatcaacgtcattata 30613073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 401 - 543
Target Start/End: Complemental strand, 30613088 - 30612946
Alignment:
Q  401 tatcaacgtcattataaacaatacatcaacatctcatcatttggttttatcattatataattcacatcatcatctaaaagcatattaatatgcattcaca 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30613088 tatcaacgtcattataaacaatacatcaacatctcatcatttggttttatcattatataattcacatcatcatctaaaagcatattaatatgcattcaca 30612989  T
Q  501 ttatctcataataatcacattcaccatcattgaatattcataa 543  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  30612988 ttatctcataataatcacattcaccatcattgaatattcataa 30612946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 93 - 212
Target Start/End: Original strand, 41375214 - 41375330
Alignment:
Q  93 gtcaagtgcacatcttccacatagactaatatgtatgcaatgttc-taactcgactttatatgcatgtggtaccttttttgaatatcagaggtatgtttc 191  Q
    ||||||| ||||||||||||||||||| | ||||||||||||||| |||||    | || |||||||||||||| |||||| |||||||| |||||||||    
T  41375214 gtcaagtacacatcttccacatagactcacatgtatgcaatgttcctaact----tctacatgcatgtggtaccgtttttggatatcagatgtatgtttc 41375309  T
Q  192 tgagtgatcccactatcactt 212  Q
    ||||||||| |||| ||||||    
T  41375310 tgagtgatctcactgtcactt 41375330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 426 - 543
Target Start/End: Original strand, 41375581 - 41375694
Alignment:
Q  426 tcaacatctcatcatttggttttatcattatataattcacatcatcatctaaaagcatattaatatgcattcacattatctcataataatcacattcacc 525  Q
    |||||||||||||||||||||| | ||||||||| ||||||||||||| | ||| ||||| |||||| |||| |||| ||   ||||||||||||||| |    
T  41375581 tcaacatctcatcatttggtttcaccattatatagttcacatcatcatgtcaaa-catatcaatatgtattcccattttc---taataatcacattcatc 41375676  T
Q  526 atcattgaatattcataa 543  Q
    ||||||  ||||||||||    
T  41375677 atcattctatattcataa 41375694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 137 - 194
Target Start/End: Original strand, 38991712 - 38991769
Alignment:
Q  137 ctaactcgactttatatgcatgtggtaccttttttgaatatcagaggtatgtttctga 194  Q
    ||||||||||| |||||||||||||||||  ||||| |||||||||||||||| ||||    
T  38991712 ctaactcgactctatatgcatgtggtaccggttttggatatcagaggtatgttactga 38991769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 226 - 353
Target Start/End: Original strand, 41375374 - 41375500
Alignment:
Q  226 gactgaccatgagtggatgaacatcttatcacgactcgacaatgcataaattcacatgactcgaaaattcacatcaacaacatcgtcacatcatatattt 325  Q
    ||||| |||||| || |||||||||| ||  |||||| ||||||||| |||||| |  |||||| || | | |||||||||||| ||| ||||||||||     
T  41375374 gactgcccatgaatgcatgaacatctcattccgactcaacaatgcattaattcatacaactcgacaaattaaatcaacaacatcatcatatcatatattc 41375473  T
Q  326 actgtcattatatcaccatgatcatttt 353  Q
    ||||||| ||| ||| ||| ||||||||    
T  41375474 actgtcactat-tcatcattatcatttt 41375500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 137 - 194
Target Start/End: Original strand, 16092423 - 16092480
Alignment:
Q  137 ctaactcgactttatatgcatgtggtaccttttttgaatatcagaggtatgtttctga 194  Q
    ||||||||||| |||||| ||||||||||  ||||||||||||||| |||||| ||||    
T  16092423 ctaactcgactatatatgtatgtggtaccggttttgaatatcagagttatgttactga 16092480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 137 - 194
Target Start/End: Complemental strand, 20264802 - 20264745
Alignment:
Q  137 ctaactcgactttatatgcatgtggtaccttttttgaatatcagaggtatgtttctga 194  Q
    ||||||||||| |||||||||||||||| | ||||||| ||||||| |||||| ||||    
T  20264802 ctaactcgactctatatgcatgtggtacttgttttgaacatcagagttatgttactga 20264745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 121 - 187
Target Start/End: Complemental strand, 19467161 - 19467093
Alignment:
Q  121 atatgtatgcaatgttc-taactcgactttatatgcatgtggtacct-tttttgaatatcagaggtatg 187  Q
    ||||||||||||||| | |||||| ||| || ||||||||||||||  |||||| ||||||||||||||    
T  19467161 atatgtatgcaatgtacctaactcaactgtacatgcatgtggtaccaatttttggatatcagaggtatg 19467093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 122 - 165
Target Start/End: Complemental strand, 32625585 - 32625541
Alignment:
Q  122 tatgtatgcaatgttc-taactcgactttatatgcatgtggtacc 165  Q
    |||||||||||||| | |||||||||| |||||||||||||||||    
T  32625585 tatgtatgcaatgtccctaactcgactctatatgcatgtggtacc 32625541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 166; Significance: 1e-88; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 22 - 543
Target Start/End: Complemental strand, 24699437 - 24698926
Alignment:
Q  22 caagttaaatacatagtattcacacatattcatcatcgtcaaatcacacatctttcacatagttacacatggtcaagtgcacatcttccacatagactaa 121  Q
    |||||| ||| ||||  |||| ||||| |||| | || ||||||||||||| |  ||||||||||||||| ||||||| |||||||| ||| | |||| |    
T  24699437 caagttgaatgcataacattctcacattttcaccttcatcaaatcacacatttaccacatagttacacatagtcaagtacacatctttcacgtggactca 24699338  T
Q  122 tatgtatgcaatgttctaactcgactttatatgcatgtggtaccttttttgaatatcagaggtatgtttctgagtgatcccactatcacttctcactgtc 221  Q
    |||||||||||||||||||||||||||||||| |||||| |||| |||||| |||||||||||| | ||||||||||||| ||  |||||| |||| |||    
T  24699337 tatgtatgcaatgttctaactcgactttatatacatgtgataccatttttggatatcagaggtaag-ttctgagtgatccaaccgtcacttttcaccgtc 24699239  T
Q  222 ac-tagactgaccatgagtggatgaacatcttatcacgactcgacaatgcataaattcacatgactcgaaaattcacatcaacaacatcgtcacatcata 320  Q
     | |||||||||||| | || ||||||||||||||| |||||||||||| |||||| || |  |||||| || | ||||||||||||||| || || |||    
T  24699238 gcttagactgaccataaatgcatgaacatcttatcatgactcgacaatgtataaatacatacaactcgacaaattacatcaacaacatcgccatattata 24699139  T
Q  321 tatttactgtcattatatcaccatgatcatttttaacctcgtcataccatcatcatatcaacgtcattatatcatgatcgtatcaacgtcattataaaca 420  Q
    |||| |||||   ||| ||| ||| || | ||| ||| |||| || |||||||||||| ||| || ||||||||| ||| ||||||| || |||||        
T  24699138 tattcactgttgctatgtcatcatcattagtttcaacatcgt-atgccatcatcatattaacatcgttatatcatcatcatatcaacatcgttata---- 24699044  T
Q  421 atacatcaacatctcatcatttggttttatcattatataattcacatcatcatctaaaagcatattaatatgcattcacattatctcataataatcacat 520  Q
       ||||||||||||||||||| |||| ||||||||||| ||||||||||||| | ||| ||||| ||| || ||||||||||||||   ||||||||||    
T  24699043 --ccatcaacatctcatcatttagtttcatcattatatagttcacatcatcatgtcaaaacatatcaatgtgtattcacattatctc---ataatcacat 24698949  T
Q  521 tcaccatcattgaatattcataa 543  Q
    ||||| |||||||||||||||||    
T  24698948 tcaccgtcattgaatattcataa 24698926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 22 - 202
Target Start/End: Original strand, 22814483 - 22814665
Alignment:
Q  22 caagttaaatacatagtattcacacatattcatcatcgtcaaatcacacatctttcacatagttacacatggtcaagtgcacatcttccacatagactaa 121  Q
    |||||| ||||||||  ||||||||||  ||| |||||||||||||||||| |||| ||||||||||||| ||||||| |||||||| |||||||||| |    
T  22814483 caagttgaatacataacattcacacatcatcaccatcgtcaaatcacacat-tttc-catagttacacatagtcaagtacacatcttacacatagactca 22814580  T
Q  122 tatgtatgcaatgtt-ctaactcgactttatatgcatgtggtacc---ttttttgaatatcagaggtatgtttctgagtgatccc 202  Q
     |||||||||||||| |||||| | || |||||||||||||||||   ||||| | |||||| |||||||| | |||||||||||    
T  22814581 catgtatgcaatgttcctaacttgtctctatatgcatgtggtaccatttttttaggatatcataggtatgtctttgagtgatccc 22814665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 122 - 194
Target Start/End: Original strand, 9882315 - 9882388
Alignment:
Q  122 tatgtatgcaatgt-tctaactcgactttatatgcatgtggtaccttttttgaatatcagaggtatgtttctga 194  Q
    |||||||||||||| |||||||||||| |||||||||||||||||  ||||| ||||||||| |||||| ||||    
T  9882315 tatgtatgcaatgtctctaactcgactctatatgcatgtggtaccggttttggatatcagagttatgttactga 9882388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 122 - 194
Target Start/End: Original strand, 40387581 - 40387654
Alignment:
Q  122 tatgtatgcaatgtt-ctaactcgactttatatgcatgtggtaccttttttgaatatcagaggtatgtttctga 194  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||  ||||| |||| |||| |||||| ||||    
T  40387581 tatgtatgcaatgtttctaactcgactctatatgcatgtggtaccagttttggatattagagttatgttactga 40387654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 194
Target Start/End: Original strand, 42145435 - 42145492
Alignment:
Q  137 ctaactcgactttatatgcatgtggtaccttttttgaatatcagaggtatgtttctga 194  Q
    ||||||||||| ||||||||||||||||   ||||| |||||| ||||||||| ||||    
T  42145435 ctaactcgactctatatgcatgtggtactgattttggatatcaaaggtatgttactga 42145492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 181
Target Start/End: Original strand, 1216750 - 1216794
Alignment:
Q  137 ctaactcgactttatatgcatgtggtaccttttttgaatatcaga 181  Q
    ||||||||||| |||||||||||||||||  ||||| ||||||||    
T  1216750 ctaactcgactctatatgcatgtggtaccggttttggatatcaga 1216794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 70 - 313
Target Start/End: Original strand, 11455512 - 11455751
Alignment:
Q  70 catctttcacatagttacacatggtcaagtgcacatcttccacatagactaatatgtatgcaatgttctaactcgactttatatgcatgtggtacctttt 169  Q
    |||||||||||||| | ||| |  |||||| |||| |||||||| ||||| ||||| |||||||||||||| |||||| |||  |||||||||||| |||    
T  11455512 catctttcacatagattcacgtattcaagtacacaacttccacacagactcatatgcatgcaatgttctaattcgactctat--gcatgtggtaccgttt 11455609  T
Q  170 ttgaatatcagaggtatgtttctgagtgatcccactatcacttctcactgtcac-tagactgaccatgagtggatgaacatcttatcacgactcgacaat 268  Q
    | || |||||||||||||||||||||||||||||| ||||||   ||||||||| | || ||||||| | || |||||||| | || | |||||| ||||    
T  11455610 tgga-tatcagaggtatgtttctgagtgatcccacaatcact--acactgtcacttggattgaccataaatgcatgaacatttcattatgactcgtcaat 11455706  T
Q  269 gcataaattcacatgactcgaaaattcacatcaacaacatcgtca 313  Q
    || |||||||| | ||||||| || | ||||||||||||||||||    
T  11455707 gcttaaattcatacgactcgataactaacatcaacaacatcgtca 11455751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 122 - 194
Target Start/End: Complemental strand, 3473046 - 3472973
Alignment:
Q  122 tatgtatgcaatgt-tctaactcgactttatatgcatgtggtaccttttttgaatatcagaggtatgtttctga 194  Q
    |||||||||||||| |||||||||||| ||||||||||| |||||  ||||| ||||||||| |||||| ||||    
T  3473046 tatgtatgcaatgtctctaactcgactctatatgcatgttgtaccggttttggatatcagagttatgttactga 3472973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 122 - 165
Target Start/End: Original strand, 3289531 - 3289575
Alignment:
Q  122 tatgtatgcaatgt-tctaactcgactttatatgcatgtggtacc 165  Q
    |||||||||||||| |||||||||||| |||||||||||||||||    
T  3289531 tatgtatgcaatgtctctaactcgactctatatgcatgtggtacc 3289575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 122 - 165
Target Start/End: Complemental strand, 18539355 - 18539311
Alignment:
Q  122 tatgtatgcaatgt-tctaactcgactttatatgcatgtggtacc 165  Q
    |||||||||||||| |||||||||||| |||||||||||||||||    
T  18539355 tatgtatgcaatgtctctaactcgactctatatgcatgtggtacc 18539311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 122 - 165
Target Start/End: Complemental strand, 39728896 - 39728852
Alignment:
Q  122 tatgtatgcaatgt-tctaactcgactttatatgcatgtggtacc 165  Q
    |||||||||||||| |||||||||||| |||||||||||||||||    
T  39728896 tatgtatgcaatgtctctaactcgactctatatgcatgtggtacc 39728852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 165
Target Start/End: Complemental strand, 10734547 - 10734492
Alignment:
Q  110 cacatagactaatatgtatgcaatgttctaactcgactttatatgcatgtggtacc 165  Q
    |||||||||| |||||||||| ||||||||  || ||| |||||||||||||||||    
T  10734547 cacatagactcatatgtatgcgatgttctagttctactctatatgcatgtggtacc 10734492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 194
Target Start/End: Original strand, 3586052 - 3586109
Alignment:
Q  137 ctaactcgactttatatgcatgtggtaccttttttgaatatcagaggtatgtttctga 194  Q
    ||||||||||| ||||||||||| |||||  ||||| ||||||||| |||||| ||||    
T  3586052 ctaactcgactctatatgcatgtagtaccgattttggatatcagagttatgttactga 3586109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 194
Target Start/End: Complemental strand, 15778426 - 15778369
Alignment:
Q  137 ctaactcgactttatatgcatgtggtaccttttttgaatatcagaggtatgtttctga 194  Q
    ||||||||||| ||||||||||||||||   ||||| ||||||||| |||||| ||||    
T  15778426 ctaactcgactctatatgcatgtggtactgattttggatatcagagttatgttactga 15778369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 122 - 165
Target Start/End: Complemental strand, 18694805 - 18694761
Alignment:
Q  122 tatgtatgcaatgttc-taactcgactttatatgcatgtggtacc 165  Q
    |||||||||||||| | |||||||||| |||||||||||||||||    
T  18694805 tatgtatgcaatgtccctaactcgactctatatgcatgtggtacc 18694761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 122 - 165
Target Start/End: Complemental strand, 18710324 - 18710280
Alignment:
Q  122 tatgtatgcaatgttc-taactcgactttatatgcatgtggtacc 165  Q
    |||||||||||||| | |||||||||| |||||||||||||||||    
T  18710324 tatgtatgcaatgtccctaactcgactctatatgcatgtggtacc 18710280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 3e-31; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 388 - 543
Target Start/End: Complemental strand, 10994292 - 10994140
Alignment:
Q  388 tatatcatgatcgtatcaacgtcattataaacaatacatcaacatctcatcatttggttttatcattatataattcacatcatcatctaaaagcatatta 487  Q
    |||||||| ||| |||||| |||||||||||||||||||||| || |||| ||||||||| || |||||||||||| ||||||||| | |||||| || |    
T  10994292 tatatcatcatcatatcaatgtcattataaacaatacatcaatatttcattatttggtttcataattatataattctcatcatcatgtcaaagcacatca 10994193  T
Q  488 atatgcattcacattatctcataataatcacattcaccatcattgaatattcataa 543  Q
    ||||| || |||||||| ||   ||||||||||| |||||||||| ||||||||||    
T  10994192 atatgtatccacattatttc---ataatcacatttaccatcattggatattcataa 10994140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 122 - 204
Target Start/End: Complemental strand, 22530255 - 22530172
Alignment:
Q  122 tatgtatgcaatgt-tctaactcgactttatatgcatgtggtaccttttttgaatatcagaggtatgtttctgagtgatcccac 204  Q
    |||||||||||||| |||||||||||| |||||||||||||||||  ||||| ||||||||| |||||| |||| | |||||||    
T  22530255 tatgtatgcaatgtctctaactcgactctatatgcatgtggtaccggttttggatatcagagttatgttactgatttatcccac 22530172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 122 - 194
Target Start/End: Complemental strand, 18148868 - 18148795
Alignment:
Q  122 tatgtatgcaatgt-tctaactcgactttatatgcatgtggtaccttttttgaatatcagaggtatgtttctga 194  Q
    |||||||||||||| |||||||||||| |||||||||||||||||  ||||||||||| ||| |||||| ||||    
T  18148868 tatgtatgcaatgtctctaactcgactctatatgcatgtggtaccggttttgaatatctgagttatgttactga 18148795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 122 - 189
Target Start/End: Complemental strand, 11509880 - 11509812
Alignment:
Q  122 tatgtatgcaatgt-tctaactcgactttatatgcatgtggtaccttttttgaatatcagaggtatgtt 189  Q
    |||||||||||||| |||||||||||| |||||||||||||||||  ||||| ||||||||| ||||||    
T  11509880 tatgtatgcaatgtctctaactcgactctatatgcatgtggtaccggttttggatatcagagttatgtt 11509812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 109 - 202
Target Start/End: Original strand, 13386670 - 13386761
Alignment:
Q  109 ccacatagactaatatgtatgcaatgttctaactcgactttatatgcatgtggtaccttttttgaatatcagaggtatgtttctgagtgatccc 202  Q
    ||||||||||| ||||| |||||||| ||||   ||||||||||||| |||||||||  ||||| ||||||||| |||||| | ||||||||||    
T  13386670 ccacatagactcatatgcatgcaatgctctaga-cgactttatatgcttgtggtacc-gttttggatatcagagttatgttaccgagtgatccc 13386761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 122 - 194
Target Start/End: Original strand, 34705843 - 34705916
Alignment:
Q  122 tatgtatgcaatgt-tctaactcgactttatatgcatgtggtaccttttttgaatatcagaggtatgtttctga 194  Q
    |||||||||||||| |||||||| ||| ||| |||||||||||||  ||||| ||||||||| |||||| ||||    
T  34705843 tatgtatgcaatgtctctaactcaactctatctgcatgtggtaccggttttggatatcagagttatgttactga 34705916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 189
Target Start/End: Complemental strand, 6019400 - 6019282
Alignment:
Q  70 catctttcacatagttacacatggtcaagtgcacatcttccacatagactaatatgtatgcaatgttctaactcgactttatatgcatgtggtacctttt 169  Q
    ||||||||||||   | ||||| ||||| || ||| |||||||||||||| ||||| ||| |||  |||| ||||| | ||||||||||||||||| |||    
T  6019400 catctttcacatgaattcacatagtcaaatgtacaacttccacatagactcatatgcatgtaatactcta-ctcgattctatatgcatgtggtaccattt 6019302  T
Q  170 ttgaatatcagaggtatgtt 189  Q
    ||| || || ||| ||||||    
T  6019301 ttggatgtcggagttatgtt 6019282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 116 - 163
Target Start/End: Original strand, 20465308 - 20465356
Alignment:
Q  116 gactaatatgtatgcaatgttcta-actcgactttatatgcatgtggta 163  Q
    |||| ||||||||||||||||||| || ||||| |||||||||||||||    
T  20465308 gactcatatgtatgcaatgttctagacacgactctatatgcatgtggta 20465356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 21501119 - 21501063
Alignment:
Q  109 ccacatagactaatatgtatgcaatgttctaactcgactttatatgcatgtggtacc 165  Q
    ||||||||||| || ||||||  || |||||| |||||| |||||||||||||||||    
T  21501119 ccacatagactcatgtgtatgttatattctaattcgactctatatgcatgtggtacc 21501063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 7e-29; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 71 - 199
Target Start/End: Original strand, 17729435 - 17729564
Alignment:
Q  71 atctttcacatagttacacatggtcaagtgcacatcttccacatagactaatatgtatgcaatgttc-taactcgactttatatgcatgtggtacctttt 169  Q
    ||||||||||||||||||||| ||||||| ||||||||| ||||||||| |  |||||| |||  || ||| |||||| ||||||||||||||||| |||    
T  17729435 atctttcacatagttacacatagtcaagtacacatcttctacatagactcacgtgtatgaaatactcataattcgactatatatgcatgtggtaccgttt 17729534  T
Q  170 ttgaatatcagaggtatgtttctgagtgat 199  Q
    ||| |||||| |||||||||||||||||||    
T  17729535 ttggatatcataggtatgtttctgagtgat 17729564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 122 - 194
Target Start/End: Complemental strand, 19770273 - 19770200
Alignment:
Q  122 tatgtatgcaatgt-tctaactcgactttatatgcatgtggtaccttttttgaatatcagaggtatgtttctga 194  Q
    |||||||||||||| |||||||||||| |||||||||||||||||  ||||| ||||||||| |||||| ||||    
T  19770273 tatgtatgcaatgtctctaactcgactctatatgcatgtggtaccggttttggatatcagagttatgttactga 19770200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 122 - 194
Target Start/End: Original strand, 22468811 - 22468884
Alignment:
Q  122 tatgtatgcaatgttc-taactcgactttatatgcatgtggtaccttttttgaatatcagaggtatgtttctga 194  Q
    |||||||||||||||| |||||||||| ||||||||||| |||| | ||||| ||||||||||| |||| ||||    
T  22468811 tatgtatgcaatgttcctaactcgactctatatgcatgtagtacatattttggatatcagaggtgtgttactga 22468884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 29 - 116
Target Start/End: Original strand, 17729360 - 17729447
Alignment:
Q  29 aatacatagtattcacacatattcatcatcgtcaaatcacacatctttcacatagttacacatggtcaagtgcacatcttccacatag 116  Q
    ||||||||| |||||| | |  ||| ||||||||||||||||||||| |||| |||||||||| ||||| | || ||||| |||||||    
T  17729360 aatacatagcattcacgcctcatcaccatcgtcaaatcacacatcttacacaaagttacacatagtcaaatacatatctttcacatag 17729447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 122 - 194
Target Start/End: Original strand, 9547705 - 9547778
Alignment:
Q  122 tatgtatgcaatgt-tctaactcgactttatatgcatgtggtaccttttttgaatatcagaggtatgtttctga 194  Q
    |||||||||||||| |||||||||||| || ||||||||||||||  ||||| |||||| || |||||| ||||    
T  9547705 tatgtatgcaatgtctctaactcgactctacatgcatgtggtaccggttttggatatcaaagttatgttactga 9547778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 122 - 165
Target Start/End: Original strand, 19891778 - 19891822
Alignment:
Q  122 tatgtatgcaatgt-tctaactcgactttatatgcatgtggtacc 165  Q
    |||||||||||||| |||||||||||| |||||||||||||||||    
T  19891778 tatgtatgcaatgtctctaactcgactctatatgcatgtggtacc 19891822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 110 - 165
Target Start/End: Complemental strand, 13250594 - 13250538
Alignment:
Q  110 cacatagactaatatgtatgcaatgttcta-actcgactttatatgcatgtggtacc 165  Q
    |||||||||| |||||||||||||||| || || ||||| || ||||||||||||||    
T  13250594 cacatagacttatatgtatgcaatgttatagacacgactctacatgcatgtggtacc 13250538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 7e-29; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 70 - 324
Target Start/End: Original strand, 10221801 - 10222040
Alignment:
Q  70 catctttcacatagttacacatggtcaagtgcacatcttccacatagactaatatgtatgcaatgttctaactcgactttatatgcatgtggtacctttt 169  Q
    |||||||||||||| | ||||| ||||||| | ||||||| |||||||||   ||||| | |||||||  |||||||||||||||||||||||||  |||    
T  10221801 catctttcacatagattcacatagtcaagtactcatcttctacatagactctcatgtacgaaatgttcctactcgactttatatgcatgtggtactgttt 10221900  T
Q  170 ttgaatatcagaggtatgtttctgagtgatcccactatcacttctcactgtcactagactgaccatgagtggatgaacatcttatcacgactcgacaatg 269  Q
    | || |||||||||||| ||||||||||||  |||  ||||||             |||||||||||| || |||||||||| |||| ||||||||||||    
T  10221901 tcga-tatcagaggtat-tttctgagtgatttcaccgtcacttg------------gactgaccatgaatgcatgaacatctcatcatgactcgacaatg 10221986  T
Q  270 cataaattcacatgactcgaaaattcacatcaacaacatcgtcacatcatatatt 324  Q
    ||| |||||| || |||||| |||| |||||||||||||| ||||||| ||||||    
T  10221987 cat-aattcatataactcgacaatttacatcaacaacatcatcacatcgtatatt 10222040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 101 - 208
Target Start/End: Complemental strand, 9620628 - 9620522
Alignment:
Q  101 cacatcttccacatagactaatatgtatgcaatgttctaactcgactttatatgcatgtggtaccttttttgaatatcagaggtatgtttctgagtgatc 200  Q
    |||| |||||||||| ||| |  ||||||||||||||  |||||||| || |||||| ||||||| |||| || |||||||||||||||||||||| |||    
T  9620628 cacaacttccacatatactcaactgtatgcaatgttcctactcgactctaaatgcatatggtaccattttgga-tatcagaggtatgtttctgagtaatc 9620530  T
Q  201 ccactatc 208  Q
    ||||||||    
T  9620529 ccactatc 9620522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 122 - 194
Target Start/End: Original strand, 4529858 - 4529931
Alignment:
Q  122 tatgtatgcaatgt-tctaactcgactttatatgcatgtggtaccttttttgaatatcagaggtatgtttctga 194  Q
    |||||||||||||| ||||||||| || ||||||||||||||| | |||||| |||||||||||||||| ||||    
T  4529858 tatgtatgcaatgtctctaactcggctctatatgcatgtggtaacatttttggatatcagaggtatgttactga 4529931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 122 - 194
Target Start/End: Original strand, 23972913 - 23972986
Alignment:
Q  122 tatgtatgcaatgt-tctaactcgactttatatgcatgtggtaccttttttgaatatcagaggtatgtttctga 194  Q
    |||||||||||||| |||||||||||| |||||||||||||||||  ||||| ||||||||| |||||| ||||    
T  23972913 tatgtatgcaatgtctctaactcgactctatatgcatgtggtaccagttttggatatcagagttatgttactga 23972986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 70 - 204
Target Start/End: Complemental strand, 9854211 - 9854078
Alignment:
Q  70 catctttcacatagttacacatggtcaagtgcacatcttccacatagactaatatgtatgcaatgttctaactcgactttatatgcatgtggtacctttt 169  Q
    |||||||||||||  | ||||| || |||| |||  || |||| |||||| ||||| ||||||| || ||| |||||| |||||||||||||||||  ||    
T  9854211 catctttcacataaattcacatagttaagtacacgactcccacctagactcatatgcatgcaatattataattcgactctatatgcatgtggtacc-gtt 9854113  T
Q  170 ttgaatatcagaggtatgtttctgagtgatcccac 204  Q
    |||  ||| |||||||| ||| |||||||||||||    
T  9854112 ttggttattagaggtatttttttgagtgatcccac 9854078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 122 - 194
Target Start/End: Original strand, 11150394 - 11150467
Alignment:
Q  122 tatgtatgcaatgt-tctaactcgactttatatgcatgtggtaccttttttgaatatcagaggtatgtttctga 194  Q
    |||||||||||||| |||||||||||| ||||||||||| |||||  ||||| ||||||||| |||||| ||||    
T  11150394 tatgtatgcaatgtctctaactcgactctatatgcatgttgtaccggttttggatatcagagttatgttactga 11150467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 122 - 194
Target Start/End: Complemental strand, 25127422 - 25127349
Alignment:
Q  122 tatgtatgcaatgt-tctaactcgactttatatgcatgtggtaccttttttgaatatcagaggtatgtttctga 194  Q
    |||||||||||||| ||||||||||||  ||||||||||||||||  ||||| ||||||||| |||||| ||||    
T  25127422 tatgtatgcaatgtctctaactcgactcaatatgcatgtggtaccggttttggatatcagagttatgttactga 25127349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 67 - 204
Target Start/End: Original strand, 25267166 - 25267301
Alignment:
Q  67 acacatctttcacatagttacacatggtcaagtgcacatcttccacatagactaatatgtatgcaatgttctaactcgactttatatgcatgtggtacct 166  Q
    ||||||||||||||||  | |||||  | || | |||| ||||||||||||||  |||| |||||||| ||| |||||||| ||||| |||||||||||     
T  25267166 acacatctttcacatatgttcacataattaaatacacaacttccacatagactcgtatgcatgcaatgctct-actcgactctatatacatgtggtaccg 25267264  T
Q  167 tttttgaatatcagaggtatgtttctgagtgatcccac 204  Q
    |||| | ||||| ||| |||||| | ||||||||||||    
T  25267265 ttttag-atatcggagttatgttaccgagtgatcccac 25267301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 122 - 194
Target Start/End: Original strand, 15703509 - 15703582
Alignment:
Q  122 tatgtatgcaatgt-tctaactcgactttatatgcatgtggtaccttttttgaatatcagaggtatgtttctga 194  Q
    |||||||||||||| |||||||||||| ||||| |||||||||||  ||||  ||||||||| |||||| ||||    
T  15703509 tatgtatgcaatgtctctaactcgactctatatacatgtggtaccgattttagatatcagagttatgttactga 15703582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 478 - 543
Target Start/End: Complemental strand, 9853697 - 9853635
Alignment:
Q  478 aagcatattaatatgcattcacattatctcataataatcacattcaccatcattgaatattcataa 543  Q
    |||||||| |||||| |||||||||||||||   |||||||||||||  |||||| ||||||||||    
T  9853697 aagcatatcaatatgtattcacattatctca---taatcacattcactctcattggatattcataa 9853635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 313
Target Start/End: Complemental strand, 9854026 - 9853939
Alignment:
Q  226 gactgaccatgagtggatgaacatcttatcacgactcgacaatgcataaattcacatgactcgaaaattcacatcaacaacatcgtca 313  Q
    |||||| ||||| || |||| ||||| |||| || || ||||||||||||||||||  |||| | || | ||||||||||||||||||    
T  9854026 gactgatcatgaatgcatgagcatctcatcatgaatcaacaatgcataaattcacagaactcaacaaattacatcaacaacatcgtca 9853939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 127 - 165
Target Start/End: Complemental strand, 9565188 - 9565150
Alignment:
Q  127 atgcaatgttctaactcgactttatatgcatgtggtacc 165  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  9565188 atgcaatgtcccaactcgactttatatgcatgtggtacc 9565150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 113 - 202
Target Start/End: Complemental strand, 34644985 - 34644896
Alignment:
Q  113 atagactaatatgtatgcaatgttctaactcgactttatatgcatgtggtacc-ttttttgaatatcagaggtatgtttctgagtgatccc 202  Q
    ||||||| ||||| |||||||| ||||   ||||| ||||||||||||||||| ||||||| ||||| ||| |||||| | ||||||||||    
T  34644985 atagactcatatgcatgcaatgctctata-cgactatatatgcatgtggtaccgttttttggatatcggagttatgttaccgagtgatccc 34644896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 96
Target Start/End: Complemental strand, 9854259 - 9854218
Alignment:
Q  55 catcgtcaaatcacacatctttcacatagttacacatggtca 96  Q
    |||||||||||||||||| |||||||||| ||||||| ||||    
T  9854259 catcgtcaaatcacacatttttcacatagatacacatagtca 9854218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 63 - 199
Target Start/End: Complemental strand, 19474540 - 19474407
Alignment:
Q  63 aatcacacatctttcacatagttacacatggtcaagtgcacatcttccacatagactaatatgtatgcaatgttc-taactcgactttatatgcatgtgg 161  Q
    |||||||||| ||||| ||||| |||||| ||||||| |||||||| | |||||||| | |||||    |||| | ||||| |||| |||||||||||||    
T  19474540 aatcacacatttttcaaatagtcacacatagtcaagtacacatctttcgcatagactcacatgta----atgtccctaacttgactctatatgcatgtgg 19474445  T
Q  162 taccttttttgaatatcagaggtatgtttctgagtgat 199  Q
    |||| |||||||||||||||||||||| | ||||||||    
T  19474444 taccgtttttgaatatcagaggtatgtatttgagtgat 19474407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 137 - 194
Target Start/End: Complemental strand, 9132636 - 9132579
Alignment:
Q  137 ctaactcgactttatatgcatgtggtaccttttttgaatatcagaggtatgtttctga 194  Q
    ||||||||||| |||||||||||||||||  ||||| |||||||||||||||| ||||    
T  9132636 ctaactcgactctatatgcatgtggtaccggttttggatatcagaggtatgttactga 9132579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 122 - 181
Target Start/End: Original strand, 12785061 - 12785121
Alignment:
Q  122 tatgtatgcaatgt-tctaactcgactttatatgcatgtggtaccttttttgaatatcaga 181  Q
    |||||||||||||| |||||||||||| |||||||||||||||||  ||||| ||||||||    
T  12785061 tatgtatgcaatgtctctaactcgactctatatgcatgtggtaccggttttggatatcaga 12785121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 137 - 194
Target Start/End: Complemental strand, 23633387 - 23633330
Alignment:
Q  137 ctaactcgactttatatgcatgtggtaccttttttgaatatcagaggtatgtttctga 194  Q
    ||||||||||| |||||||||||||||||  ||||| ||||||||| |||||| ||||    
T  23633387 ctaactcgactctatatgcatgtggtaccggttttggatatcagagttatgttactga 23633330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 124 - 204
Target Start/End: Original strand, 52272723 - 52272804
Alignment:
Q  124 tgtatgcaatgt-tctaactcgactttatatgcatgtggtaccttttttgaatatcagaggtatgtttctgagtgatcccac 204  Q
    |||||||||||| |||||||||||| ||||||||||||||| |  ||||| |||||| || |||||| |||| | |||||||    
T  52272723 tgtatgcaatgtctctaactcgactctatatgcatgtggtatcggttttggatatcatagttatgttactgatttatcccac 52272804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 41138115 - 41138059
Alignment:
Q  138 taactcgactttatatgcatgtggtaccttttttgaatatcagaggtatgtttctga 194  Q
    ||||| |||| |||||||||||||||||  ||||| ||||||||| |||||| ||||    
T  41138115 taacttgactctatatgcatgtggtaccagttttggatatcagagttatgttactga 41138059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1200 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold1200
Description:

Target: scaffold1200; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 427 - 543
Target Start/End: Complemental strand, 2200 - 2087
Alignment:
Q  427 caacatctcatcatttggttttatcattatataattcacatcatcatctaaaagcatattaatatgcattcacattatctcataataatcacattcacca 526  Q
    ||||||| ||| ||||  ||| ||||||||||| ||||||||||||| | ||||||||| |||||| ||||| |||||||||   |||||||||||||||    
T  2200 caacatcacataatttaatttcatcattatatagttcacatcatcatgtcaaagcatatcaatatgtattcatattatctca---taatcacattcacca 2104  T
Q  527 tcattgaatattcataa 543  Q
    |||||| || |||||||    
T  2103 tcattgtattttcataa 2087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 6e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 17 - 204
Target Start/End: Complemental strand, 28415435 - 28415244
Alignment:
Q  17 atcaccaagttaaatacatagtattcacacatattcatcatcgtcaaatcacacatctttcacatagttacacatggtcaagtgcacatcttccacatag 116  Q
    |||| |||||| ||||||||  |||||||| |  ||| || ||||||||||||||| |||||||||| ||||||| |||| || |||||||| || ||||    
T  28415435 atcatcaagttgaatacataacattcacacttcatcaccaacgtcaaatcacacatttttcacatagatacacatagtcatgtacacatctttcatatag 28415336  T
Q  117 actaatatgtatgcaatgttctaactcgactttatatgcatgt----ggtaccttttttgaatatcagaggtatgtttctgagtgatcccac 204  Q
    ||| ||||| ||| |||||| ||| || ||| ||||||||| |    | |||| |||||| |||||  | ||||||| ||||||||||||||    
T  28415335 actcatatgcatgtaatgttttaattcaactctatatgcatatatatgataccgtttttggatatcgaatgtatgttactgagtgatcccac 28415244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 122 - 204
Target Start/End: Complemental strand, 39437202 - 39437119
Alignment:
Q  122 tatgtatgcaatgt-tctaactcgactttatatgcatgtggtaccttttttgaatatcagaggtatgtttctgagtgatcccac 204  Q
    |||||||||||||| ||||||||||||||||||||||||||||||  ||||| |||| |||| ||| || |||| | |||||||    
T  39437202 tatgtatgcaatgtctctaactcgactttatatgcatgtggtaccggttttggatattagagttatattactgatttatcccac 39437119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 137 - 194
Target Start/End: Complemental strand, 29497122 - 29497065
Alignment:
Q  137 ctaactcgactttatatgcatgtggtaccttttttgaatatcagaggtatgtttctga 194  Q
    ||||||||||| |||||||||||||||||  ||||| |||||||||||||||| ||||    
T  29497122 ctaactcgactatatatgcatgtggtaccagttttgtatatcagaggtatgttactga 29497065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0430 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: scaffold0430
Description:

Target: scaffold0430; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 87 - 199
Target Start/End: Complemental strand, 9727 - 9615
Alignment:
Q  87 cacatggtcaagtgcacatcttccacatagactaatatgtatgcaatgttctaactcgactttatatgcatgtggtaccttttttgaatatcagaggtat 186  Q
    ||||| ||||||| ||||||||||||||||||| | ||||||||||| |||  |||||||| ||||||||| || ||   |||||| |||  ||||||||    
T  9727 cacatagtcaagtacacatcttccacatagactcacatgtatgcaatattcatactcgactctatatgcatatgatattgtttttggatactagaggtat 9628  T
Q  187 gtttctgagtgat 199  Q
    |||| ||||||||    
T  9627 gtttatgagtgat 9615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0430; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 112
Target Start/End: Complemental strand, 9830 - 9773
Alignment:
Q  55 catcgtcaaatcacacatctttcacatagttacacatggtcaagtgcacatcttccac 112  Q
    |||| ||||||||||||| || |||||||| |||||| ||||||| |||| |||||||    
T  9830 catcttcaaatcacacattttccacatagtgacacatagtcaagtacacaccttccac 9773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0430; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 226 - 321
Target Start/End: Complemental strand, 9548 - 9452
Alignment:
Q  226 gactgaccatgagtggatgaacatcttatcacgactcgacaatgcataa-attcacatgactcgaaaattcacatcaacaacatcgtcacatcatat 321  Q
    |||||| ||||| || ||||||||| ||||| |||||||||||||| || ||||| || | || | || | ||||| |||||||||||| |||||||    
T  9548 gactgatcatgaatgcatgaacatcatatcatgactcgacaatgcaaaagattcatataattcaacaactaacatcgacaacatcgtcatatcatat 9452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 122 - 194
Target Start/End: Original strand, 647 - 720
Alignment:
Q  122 tatgtatgcaatgt-tctaactcgactttatatgcatgtggtaccttttttgaatatcagaggtatgtttctga 194  Q
    |||||||||||||| |||||||||||| |||||||||||||||||  ||||| ||||||||| |||||| ||||    
T  647 tatgtatgcaatgtctctaactcgactctatatgcatgtggtaccggttttggatatcagagatatgttactga 720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 122 - 194
Target Start/End: Original strand, 106756 - 106829
Alignment:
Q  122 tatgtatgcaatgt-tctaactcgactttatatgcatgtggtaccttttttgaatatcagaggtatgtttctga 194  Q
    |||||||||||||| |||||||||||| |||||||||||||||||  ||||| ||||||||| |||||| ||||    
T  106756 tatgtatgcaatgtctctaactcgactctatatgcatgtggtaccggttttggatatcagagttatgttactga 106829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0498 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0498
Description:

Target: scaffold0498; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 122 - 166
Target Start/End: Original strand, 12095 - 12140
Alignment:
Q  122 tatgtatgcaatgt-tctaactcgactttatatgcatgtggtacct 166  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||    
T  12095 tatgtatgcaatgtctctaactcgactctatatgcatgtggtacct 12140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0323 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 122 - 194
Target Start/End: Original strand, 15302 - 15375
Alignment:
Q  122 tatgtatgcaatgt-tctaactcgactttatatgcatgtggtaccttttttgaatatcagaggtatgtttctga 194  Q
    |||||| ||||||| |||||||||||| ||||||||||| |||||  ||||| ||||||||| |||||| ||||    
T  15302 tatgtaagcaatgtctctaactcgactctatatgcatgtagtaccggttttggatatcagagttatgttactga 15375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0688
Description:

Target: scaffold0688; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 165
Target Start/End: Complemental strand, 1010 - 971
Alignment:
Q  126 tatgcaatgttctaactcgactttatatgcatgtggtacc 165  Q
    |||||||||||||| ||||||| |||||||||||||||||    
T  1010 tatgcaatgttctacctcgactctatatgcatgtggtacc 971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 165
Target Start/End: Complemental strand, 7579 - 7540
Alignment:
Q  126 tatgcaatgttctaactcgactttatatgcatgtggtacc 165  Q
    |||||||||||||| ||||||| |||||||||||||||||    
T  7579 tatgcaatgttctacctcgactctatatgcatgtggtacc 7540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 122 - 165
Target Start/End: Original strand, 221850 - 221894
Alignment:
Q  122 tatgtatgcaatgtt-ctaactcgactttatatgcatgtggtacc 165  Q
    ||||||||||||||  ||||||||||| |||||||||||||||||    
T  221850 tatgtatgcaatgtcactaactcgactctatatgcatgtggtacc 221894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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