View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16797_high_24 (Length: 255)
Name: NF16797_high_24
Description: NF16797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16797_high_24 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 8e-76; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 62 - 255
Target Start/End: Complemental strand, 50074304 - 50074111
Alignment:
| Q |
62 |
atctttgtatgcatgcaaatttgaatcctttnnnnnnngaattagtatttatataaaacaatctctgtatgcatatgcaatcttannnnnnnaaggaaat |
161 |
Q |
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| T |
50074304 |
atctttgtatgcatgcaaatttgaatcctttaaaaaaagaattagtatttatataaaacaatctccgtatgcatatgcaatcttatttttttaaggaaat |
50074205 |
T |
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| Q |
162 |
tgtatgcaggcaaatgtttatgatgatcatattagtataaaataacatatttaagcaacattttcttgccctagtttatctaacctccgtagat |
255 |
Q |
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| T |
50074204 |
tgtatgcacgcaaatgtttatgatgatcatattagtataaaataacatatttaagcaacattttcttgccctagtttatctaacctccgtagat |
50074111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 50074902 - 50074853
Alignment:
| Q |
14 |
gagatgaagttgaaattcatatttaagtaaagtaattttataaaacttat |
63 |
Q |
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| T |
50074902 |
gagatgaagttgaaattcatatttaagtaaagtaattttataaaacttat |
50074853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 50068883 - 50068834
Alignment:
| Q |
14 |
gagatgaagttgaaattcatatttaagtaaagtaattttataaaacttat |
63 |
Q |
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| T |
50068883 |
gagatgaagttgaaagtcatatttaagtaaagtaattttataaaatttat |
50068834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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