View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16797_high_28 (Length: 244)
Name: NF16797_high_28
Description: NF16797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16797_high_28 |
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| [»] scaffold0341 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 6516303 - 6516505
Alignment:
| Q |
1 |
acaataaggtgcaatgtttcaacttaattaccttcaaaccttttctttggcttccttactttcaaatagatgcatataaaaatgaagaccatagcaacaa |
100 |
Q |
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| T |
6516303 |
acaataaggtgcaatgtttcaacttaattaccttcaaaccttttctttggcttccttactttcaaatagatgcatataaaaatgaagaccatagcaacaa |
6516402 |
T |
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| Q |
101 |
gagcaattggtactcctatagcgatgccaatggtagaaccataattgttgctttttcctgcacaaacnnnnnnnctccgtggggacatttcatatgtact |
200 |
Q |
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| T |
6516403 |
gagcaattggtactcctatagcgatgccaatggtagaaccataattgttgctttttcctgcacaaacaaaaaaactccgtggggacatttcatatgtact |
6516502 |
T |
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| Q |
201 |
aag |
203 |
Q |
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||| |
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| T |
6516503 |
aag |
6516505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 12 - 167
Target Start/End: Original strand, 6498599 - 6498751
Alignment:
| Q |
12 |
caatgtttcaacttaattaccttcaaaccttttctttggcttccttactttcaaatagatgcatataaaaatgaagaccatagcaacaagagcaattggt |
111 |
Q |
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| T |
6498599 |
caatgtttcagcttaatcaccttcaaacgttttctttggcttccttattcttaaatagatgcagataaaaatgaagaccatagcaacaagagcaattgga |
6498698 |
T |
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| Q |
112 |
actcctatagcgatgccaatggtagaaccataattgttgctttttcctgcacaaac |
167 |
Q |
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| T |
6498699 |
actcctacagcgatgccaatggtagcacc---attgttgctttttcctgcacaaac |
6498751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 24 - 165
Target Start/End: Original strand, 6505438 - 6505576
Alignment:
| Q |
24 |
ttaattaccttcaaaccttttctttggcttccttactttcaaatagatgcatataaaaatgaagaccatagcaacaagagcaattggtactcctatagcg |
123 |
Q |
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| T |
6505438 |
ttaattaccttcacacgttttctttggctttcttagtcttaaatagatgcagataaaaatgaagaccataacaacaatagcaattggtacccctagagcg |
6505537 |
T |
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| Q |
124 |
atgccaatggtagaaccataattgttgctttttcctgcacaa |
165 |
Q |
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| T |
6505538 |
atacctatggtagtac---tgttgttgctttttcctgcacaa |
6505576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 136
Target Start/End: Original strand, 6511794 - 6511902
Alignment:
| Q |
28 |
ttaccttcaaaccttttctttggcttccttactttcaaatagatgcatataaaaatgaagaccatagcaacaagagcaattggtactcctatagcgatgc |
127 |
Q |
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||||||||||||||||| | ||||| ||| ||| | | ||| ||||| |||||||||||||||||| ||||||||||||||||||||||| ||| |||| |
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| T |
6511794 |
ttaccttcaaaccttttatctggctccctcactcttatataaatgcagataaaaatgaagaccataagaacaagagcaattggtactcctacagcaatgc |
6511893 |
T |
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| Q |
128 |
caatggtag |
136 |
Q |
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|||| |||| |
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| T |
6511894 |
caatagtag |
6511902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 24 - 165
Target Start/End: Original strand, 7116 - 7254
Alignment:
| Q |
24 |
ttaattaccttcaaaccttttctttggcttccttactttcaaatagatgcatataaaaatgaagaccatagcaacaagagcaattggtactcctatagcg |
123 |
Q |
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||||||||||||| || ||||||||||||| |||| | | ||||||||||| |||||||||||||||||| |||||| |||||||||||| |||| |||| |
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| T |
7116 |
ttaattaccttcacacgttttctttggctttcttagtcttaaatagatgcagataaaaatgaagaccataacaacaatagcaattggtacccctagagcg |
7215 |
T |
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| Q |
124 |
atgccaatggtagaaccataattgttgctttttcctgcacaa |
165 |
Q |
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|| || ||||||| || ||||||||||||||||||||| |
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| T |
7216 |
atacctatggtagtac---tgttgttgctttttcctgcacaa |
7254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 136
Target Start/End: Original strand, 13473 - 13581
Alignment:
| Q |
28 |
ttaccttcaaaccttttctttggcttccttactttcaaatagatgcatataaaaatgaagaccatagcaacaagagcaattggtactcctatagcgatgc |
127 |
Q |
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||||||||||||||||| | ||||| ||| ||| | | ||| ||||| |||||||||||||||||| ||||||||||||||||||||||| ||| |||| |
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| T |
13473 |
ttaccttcaaaccttttatctggctccctcactcttatataaatgcagataaaaatgaagaccataagaacaagagcaattggtactcctacagcaatgc |
13572 |
T |
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| Q |
128 |
caatggtag |
136 |
Q |
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|||| |||| |
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| T |
13573 |
caatagtag |
13581 |
T |
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